Wall clock time and date at job start Tue Mar 31 2020 10:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33411 * 120.00118 * 2 1 4 4 C 1.46335 * 119.99906 * 180.02562 * 3 2 1 5 5 C 1.35196 * 119.99509 * 179.97438 * 4 3 2 6 6 C 1.46233 * 119.99511 * 179.97438 * 5 4 3 7 7 O 1.21735 * 120.00080 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00135 * 5.59345 * 8 6 5 10 10 C 1.50707 * 109.46903 * 269.99934 * 9 8 6 11 11 H 1.07998 * 119.99971 * 359.97438 * 10 9 8 12 12 C 1.37867 * 119.99613 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00692 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99708 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47372 * 60.00344 * 14 12 10 16 16 H 1.48505 * 109.46985 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47282 * 299.99643 * 14 12 10 18 18 C 1.40004 * 120.00113 * 185.59050 * 8 6 5 19 19 C 1.38875 * 120.01403 * 56.09521 * 18 8 6 20 20 C 1.38087 * 119.97979 * 180.23154 * 19 18 8 21 21 C 1.38724 * 120.01434 * 359.51657 * 20 19 18 22 22 O 1.35976 * 119.97988 * 180.20555 * 21 20 19 23 23 C 1.42898 * 116.99995 * 0.25634 * 22 21 20 24 24 C 1.53002 * 109.47334 * 179.97438 * 23 22 21 25 25 C 1.38725 * 120.03979 * 0.46256 * 21 20 19 26 26 C 1.38089 * 120.01451 * 359.78956 * 25 21 20 27 27 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47098 * 299.99939 * 1 2 3 29 29 H 1.08997 * 109.47442 * 59.99839 * 1 2 3 30 30 H 1.08005 * 119.99837 * 179.97438 * 2 1 3 31 31 H 1.08005 * 120.00045 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.00229 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.00715 * 359.97438 * 5 4 3 34 34 H 1.09003 * 109.46923 * 29.99720 * 9 8 6 35 35 H 1.08999 * 109.47416 * 149.99896 * 9 8 6 36 36 H 0.97002 * 120.00466 * 179.97438 * 13 12 10 37 37 H 1.07995 * 120.01222 * 359.95359 * 19 18 8 38 38 H 1.07995 * 119.98830 * 179.72695 * 20 19 18 39 39 H 1.09003 * 109.46995 * 299.99463 * 23 22 21 40 40 H 1.09008 * 109.47025 * 59.99619 * 23 22 21 41 41 H 1.08995 * 109.47271 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47014 * 300.00437 * 24 23 22 43 43 H 1.09004 * 109.46668 * 59.99754 * 24 23 22 44 44 H 1.07998 * 119.99823 * 179.76892 * 25 21 20 45 45 H 1.08004 * 120.00390 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1554 0.0000 4 6 3.6374 1.1553 -0.0006 5 6 4.3134 2.3262 -0.0011 6 6 5.7757 2.3261 -0.0011 7 8 6.3843 1.2718 -0.0011 8 7 6.4496 3.4933 -0.0021 9 6 5.7223 4.7592 0.1204 10 6 5.3530 5.2612 -1.2518 11 1 5.6325 4.6943 -2.1275 12 6 4.6584 6.4442 -1.3891 13 7 4.3176 7.1343 -0.3228 14 14 4.2013 7.0668 -3.0900 15 1 3.3412 6.0649 -3.7693 16 1 3.4640 8.3499 -2.9657 17 1 5.4359 7.2811 -3.8870 18 6 7.8446 3.4961 -0.1203 19 6 8.4512 2.8752 -1.2043 20 6 9.8274 2.8743 -1.3176 21 6 10.6035 3.5020 -0.3542 22 8 11.9584 3.5042 -0.4686 23 6 12.5142 2.8462 -1.6089 24 6 14.0399 2.9530 -1.5660 25 6 9.9983 4.1228 0.7288 26 6 8.6224 4.1201 0.8462 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.0470 -0.9354 0.0004 31 1 1.6341 2.0907 -0.0004 32 1 4.1774 0.2201 -0.0006 33 1 3.7735 3.2615 -0.0015 34 1 4.8163 4.6025 0.7059 35 1 6.3542 5.4946 0.6184 36 1 3.8293 7.9668 -0.4194 37 1 7.8471 2.3894 -1.9561 38 1 10.2995 2.3876 -2.1582 39 1 12.2228 1.7959 -1.6001 40 1 12.1426 3.3189 -2.5181 41 1 14.4639 2.4508 -2.4355 42 1 14.3310 4.0034 -1.5748 43 1 14.4117 2.4806 -0.6567 44 1 10.6032 4.6081 1.4804 45 1 8.1514 4.6032 1.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103960605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:14 Heat of formation + Delta-G solvation = -20.501347 kcal Electronic energy + Delta-G solvation = -25285.314259 eV Core-core repulsion = 21654.817012 eV Total energy + Delta-G solvation = -3630.497247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14510 -39.18782 -37.11878 -35.54156 -34.82400 -32.66945 -32.04135 -31.66947 -30.59544 -28.81953 -27.30659 -26.66166 -24.02890 -23.38260 -22.74690 -21.70070 -20.66974 -19.46338 -18.26778 -18.02677 -16.81371 -16.68710 -16.06115 -15.98380 -15.54820 -14.60702 -14.45655 -14.24204 -14.14178 -13.83535 -13.37726 -13.31449 -13.25240 -13.12750 -12.91297 -12.65767 -12.43986 -12.12080 -11.89714 -11.81243 -11.67071 -11.62389 -11.39177 -11.13344 -10.98334 -10.78537 -10.68371 -10.53141 -10.50200 -10.20623 -9.86643 -9.28900 -8.62732 -8.58324 -8.46536 -8.04125 -7.23524 -6.21004 -4.28683 1.11630 1.73132 1.82672 2.90068 3.23385 3.28004 3.31038 3.33990 3.78838 3.97519 4.21317 4.34008 4.85362 4.89679 4.92987 5.11639 5.12349 5.13008 5.21485 5.25540 5.37556 5.41875 5.56891 5.58166 5.67186 5.68066 5.71106 5.75875 5.90701 5.93292 5.95595 6.00498 6.24999 6.37028 6.38972 6.66991 6.67608 6.76569 6.81670 6.92507 7.02111 7.03495 7.14840 7.52956 7.70384 7.76627 7.99149 8.17662 8.73978 8.92321 9.38624 10.85326 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.003780 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.720912 B = 7406.511718 C = 9500.350634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.149 4.149 3 C -0.131 4.131 4 C -0.068 4.068 5 C -0.171 4.171 6 C 0.547 3.453 7 O -0.563 6.563 8 N -0.549 5.549 9 C 0.236 3.764 10 C -0.537 4.537 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.145 3.855 19 C -0.072 4.072 20 C -0.195 4.195 21 C 0.107 3.893 22 O -0.320 6.320 23 C 0.054 3.946 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.090 4.090 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.267 0.733 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -9.022 -0.078 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.192 4.192 6 C 0.340 3.660 7 O -0.445 6.445 8 N -0.273 5.273 9 C 0.118 3.882 10 C -0.575 4.575 11 H 0.079 0.921 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.724 3.276 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.052 3.948 19 C -0.092 4.092 20 C -0.214 4.214 21 C 0.062 3.938 22 O -0.235 6.235 23 C -0.021 4.021 24 C -0.208 4.208 25 C -0.158 4.158 26 C -0.110 4.110 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.147 0.853 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.624 -9.264 0.120 10.838 hybrid contribution -0.431 0.566 -1.266 1.452 sum 5.193 -8.697 -1.146 10.194 Atomic orbital electron populations 1.20852 0.92958 1.02189 1.02205 1.23553 0.96061 0.97758 0.99309 1.21884 0.93131 0.98555 1.01343 1.22388 0.93021 0.98237 0.95184 1.23325 0.93350 0.99908 1.02576 1.18387 0.88458 0.82952 0.76227 1.90738 1.70755 1.31295 1.51722 1.45845 1.03679 1.08843 1.68982 1.19640 0.92097 0.78425 0.98037 1.21398 1.36635 1.07041 0.92442 0.92072 1.24901 0.95373 0.96181 0.97143 1.69903 1.38913 1.15528 1.28552 0.86566 0.78770 0.78145 0.84102 1.20010 1.21069 1.20101 1.17513 0.83676 0.99518 0.94060 1.20899 0.93732 0.98326 0.96223 1.20975 0.94160 1.05612 1.00654 1.18850 0.81745 0.97627 0.95574 1.86028 1.18283 1.73850 1.45314 1.22708 0.94549 0.96874 0.87984 1.21761 0.93027 1.03196 1.02779 1.20141 0.93795 1.03713 0.98122 1.20936 0.92342 0.99719 0.98005 0.92138 0.91465 0.91445 0.87133 0.86317 0.85963 0.83772 0.93759 0.94043 0.92378 0.86022 0.85830 0.92246 0.92181 0.90651 0.91612 0.91677 0.85308 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 10.19 36.01 0.37 -0.81 16 2 C -0.15 -1.73 9.98 -36.00 -0.36 -2.09 16 3 C -0.13 -1.83 9.48 -38.01 -0.36 -2.19 16 4 C -0.07 -1.13 9.38 -37.41 -0.35 -1.48 16 5 C -0.17 -3.29 8.85 -37.46 -0.33 -3.63 16 6 C 0.55 11.87 7.37 -13.05 -0.10 11.77 16 7 O -0.56 -13.01 15.57 5.16 0.08 -12.93 16 8 N -0.55 -12.09 2.57 -116.30 -0.30 -12.39 16 9 C 0.24 5.63 4.68 -5.19 -0.02 5.61 16 10 C -0.54 -13.95 9.30 -34.44 -0.32 -14.27 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 14 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.14 3.02 5.19 -83.66 -0.43 2.58 16 19 C -0.07 -1.41 8.91 -39.40 -0.35 -1.76 16 20 C -0.19 -3.27 9.03 -39.46 -0.36 -3.63 16 21 C 0.11 1.78 6.69 -39.22 -0.26 1.51 16 22 O -0.32 -4.73 10.14 -19.66 -0.20 -4.93 16 23 C 0.05 0.60 5.46 37.16 0.20 0.81 16 24 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 25 C -0.14 -2.33 9.98 -39.46 -0.39 -2.72 16 26 C -0.09 -1.68 9.30 -39.40 -0.37 -2.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.11 1.19 8.05 -52.48 -0.42 0.77 16 31 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 32 H 0.12 2.01 7.52 -52.49 -0.39 1.62 16 33 H 0.14 2.88 6.30 -52.49 -0.33 2.54 16 34 H 0.04 1.07 6.35 -51.93 -0.33 0.74 16 35 H 0.04 1.03 7.30 -51.93 -0.38 0.65 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.12 2.41 8.03 -52.49 -0.42 1.99 16 38 H 0.12 1.73 6.29 -52.49 -0.33 1.40 16 39 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 40 H 0.06 0.64 7.67 -51.92 -0.40 0.24 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.13 2.29 7.78 -52.48 -0.41 1.88 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -29.78 385.99 -8.78 -38.56 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.74 Total: 5.40 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.15 Total: -11.56 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.44 Total: -35.86 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.12 Total: -17.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.78 -8.78 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103960605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.054 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds