Wall clock time and date at job start Tue Mar 31 2020 10:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33411 * 120.00118 * 2 1 4 4 C 1.46335 * 119.99906 * 180.02562 * 3 2 1 5 5 C 1.35196 * 119.99509 * 179.97438 * 4 3 2 6 6 C 1.46233 * 119.99511 * 179.97438 * 5 4 3 7 7 O 1.21735 * 120.00080 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00135 * 5.59345 * 8 6 5 10 10 C 1.50707 * 109.46903 * 269.99934 * 9 8 6 11 11 H 1.07998 * 119.99971 * 359.97438 * 10 9 8 12 12 C 1.37867 * 119.99613 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00692 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99708 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47372 * 60.00344 * 14 12 10 16 16 H 1.48505 * 109.46985 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47282 * 299.99643 * 14 12 10 18 18 C 1.40004 * 120.00113 * 185.59050 * 8 6 5 19 19 C 1.38875 * 120.01403 * 56.09521 * 18 8 6 20 20 C 1.38087 * 119.97979 * 180.23154 * 19 18 8 21 21 C 1.38724 * 120.01434 * 359.51657 * 20 19 18 22 22 O 1.35976 * 119.97988 * 180.20555 * 21 20 19 23 23 C 1.42898 * 116.99995 * 0.25634 * 22 21 20 24 24 C 1.53002 * 109.47334 * 179.97438 * 23 22 21 25 25 C 1.38725 * 120.03979 * 0.46256 * 21 20 19 26 26 C 1.38089 * 120.01451 * 359.78956 * 25 21 20 27 27 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47098 * 299.99939 * 1 2 3 29 29 H 1.08997 * 109.47442 * 59.99839 * 1 2 3 30 30 H 1.08005 * 119.99837 * 179.97438 * 2 1 3 31 31 H 1.08005 * 120.00045 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.00229 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.00715 * 359.97438 * 5 4 3 34 34 H 1.09003 * 109.46923 * 29.99720 * 9 8 6 35 35 H 1.08999 * 109.47416 * 149.99896 * 9 8 6 36 36 H 0.97002 * 120.00466 * 179.97438 * 13 12 10 37 37 H 1.07995 * 120.01222 * 359.95359 * 19 18 8 38 38 H 1.07995 * 119.98830 * 179.72695 * 20 19 18 39 39 H 1.09003 * 109.46995 * 299.99463 * 23 22 21 40 40 H 1.09008 * 109.47025 * 59.99619 * 23 22 21 41 41 H 1.08995 * 109.47271 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47014 * 300.00437 * 24 23 22 43 43 H 1.09004 * 109.46668 * 59.99754 * 24 23 22 44 44 H 1.07998 * 119.99823 * 179.76892 * 25 21 20 45 45 H 1.08004 * 120.00390 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1554 0.0000 4 6 3.6374 1.1553 -0.0006 5 6 4.3134 2.3262 -0.0011 6 6 5.7757 2.3261 -0.0011 7 8 6.3843 1.2718 -0.0011 8 7 6.4496 3.4933 -0.0021 9 6 5.7223 4.7592 0.1204 10 6 5.3530 5.2612 -1.2518 11 1 5.6325 4.6943 -2.1275 12 6 4.6584 6.4442 -1.3891 13 7 4.3176 7.1343 -0.3228 14 14 4.2013 7.0668 -3.0900 15 1 3.3412 6.0649 -3.7693 16 1 3.4640 8.3499 -2.9657 17 1 5.4359 7.2811 -3.8870 18 6 7.8446 3.4961 -0.1203 19 6 8.4512 2.8752 -1.2043 20 6 9.8274 2.8743 -1.3176 21 6 10.6035 3.5020 -0.3542 22 8 11.9584 3.5042 -0.4686 23 6 12.5142 2.8462 -1.6089 24 6 14.0399 2.9530 -1.5660 25 6 9.9983 4.1228 0.7288 26 6 8.6224 4.1201 0.8462 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.0470 -0.9354 0.0004 31 1 1.6341 2.0907 -0.0004 32 1 4.1774 0.2201 -0.0006 33 1 3.7735 3.2615 -0.0015 34 1 4.8163 4.6025 0.7059 35 1 6.3542 5.4946 0.6184 36 1 3.8293 7.9668 -0.4194 37 1 7.8471 2.3894 -1.9561 38 1 10.2995 2.3876 -2.1582 39 1 12.2228 1.7959 -1.6001 40 1 12.1426 3.3189 -2.5181 41 1 14.4639 2.4508 -2.4355 42 1 14.3310 4.0034 -1.5748 43 1 14.4117 2.4806 -0.6567 44 1 10.6032 4.6081 1.4804 45 1 8.1514 4.6032 1.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103960605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:13 Heat of formation + Delta-G solvation = -34.666572 kcal Electronic energy + Delta-G solvation = -25285.928509 eV Core-core repulsion = 21654.817012 eV Total energy + Delta-G solvation = -3631.111497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61278 -40.57900 -38.49695 -36.69974 -36.51133 -34.55911 -33.27330 -32.67096 -31.92921 -30.27695 -28.97456 -27.91967 -25.37300 -24.82868 -24.28383 -22.93817 -21.95753 -20.59756 -19.79569 -19.27345 -18.66485 -18.31511 -17.70325 -17.01801 -16.92440 -16.40694 -15.75153 -15.70249 -15.49134 -15.27790 -14.62218 -14.41077 -14.34655 -14.26184 -14.15233 -14.11592 -13.80168 -13.56165 -13.20927 -13.02958 -12.98042 -12.87398 -12.64194 -12.61822 -12.54078 -12.18544 -12.06894 -11.98088 -11.73844 -11.71029 -11.59996 -10.97805 -10.60698 -10.10248 -10.01054 -9.26786 -8.75553 -8.20750 -6.37116 -0.20257 0.32362 0.40218 1.40481 1.41265 1.49193 1.62075 2.15094 2.28349 2.41309 2.47755 2.77569 3.07787 3.69187 3.80296 3.87490 4.04149 4.07839 4.17302 4.26162 4.28324 4.33994 4.36271 4.39583 4.54870 4.61289 4.65206 4.77458 4.85230 4.88899 4.96909 4.98918 5.01786 5.06397 5.14180 5.20223 5.23027 5.32024 5.41221 5.53732 5.57772 5.66704 5.68183 5.83755 5.99972 6.01014 6.43209 6.46261 6.73704 7.23124 7.35483 8.83130 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.003780 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.720912 B = 7406.511718 C = 9500.350634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.174 4.174 4 C -0.024 4.024 5 C -0.220 4.220 6 C 0.544 3.456 7 O -0.588 6.588 8 N -0.552 5.552 9 C 0.254 3.746 10 C -0.545 4.545 11 H 0.048 0.952 12 C 0.026 3.974 13 N -0.917 5.917 14 Si 0.956 3.044 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.276 1.276 18 C 0.106 3.894 19 C -0.088 4.088 20 C -0.190 4.190 21 C 0.113 3.887 22 O -0.325 6.325 23 C 0.041 3.959 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.100 4.100 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.036 0.964 35 H 0.025 0.975 36 H 0.270 0.730 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.154 0.846 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.365 -10.309 -1.032 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 C -0.192 4.192 4 C -0.044 4.044 5 C -0.240 4.240 6 C 0.338 3.662 7 O -0.472 6.472 8 N -0.277 5.277 9 C 0.134 3.866 10 C -0.584 4.584 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.556 5.556 14 Si 0.781 3.219 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.201 1.201 18 C 0.014 3.986 19 C -0.108 4.108 20 C -0.209 4.209 21 C 0.068 3.932 22 O -0.239 6.239 23 C -0.034 4.034 24 C -0.203 4.203 25 C -0.156 4.156 26 C -0.120 4.120 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.170 0.830 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.172 0.828 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.702 -10.552 -0.836 12.023 hybrid contribution -0.478 0.758 -0.963 1.315 sum 5.225 -9.794 -1.799 11.245 Atomic orbital electron populations 1.20990 0.90827 1.03968 1.02910 1.24014 0.97672 0.97296 0.93063 1.21816 0.91635 0.99769 1.05986 1.22604 0.94456 0.97126 0.90234 1.23005 0.92017 1.00370 1.08610 1.18743 0.89360 0.82527 0.75522 1.90687 1.71407 1.31641 1.53489 1.45753 1.04414 1.08209 1.69273 1.19257 0.91499 0.78950 0.96852 1.21525 1.36799 1.07238 0.92806 0.93350 1.25594 0.95188 0.96231 1.00481 1.69991 1.39466 1.15892 1.30260 0.85646 0.78442 0.77872 0.79987 1.19420 1.20183 1.20124 1.17889 0.83322 1.01710 0.95673 1.20924 0.94983 0.99000 0.95938 1.21209 0.92978 1.05138 1.01531 1.18939 0.82815 0.96477 0.94985 1.86050 1.16808 1.74094 1.46985 1.23100 0.96144 0.97155 0.86992 1.21791 0.90916 1.03530 1.04030 1.20411 0.93160 1.03253 0.98806 1.21052 0.93275 0.99779 0.97849 0.89900 0.90540 0.90745 0.85655 0.86388 0.85722 0.85282 0.94585 0.95690 0.92139 0.87270 0.82971 0.91343 0.91490 0.88125 0.91733 0.91611 0.82796 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 10.19 71.24 0.73 -1.25 16 2 C -0.10 -2.10 9.98 24.59 0.25 -1.85 16 3 C -0.17 -4.71 9.48 23.28 0.22 -4.49 16 4 C -0.02 -0.82 9.38 23.68 0.22 -0.59 16 5 C -0.22 -8.96 8.85 23.65 0.21 -8.75 16 6 C 0.54 25.07 7.37 86.32 0.64 25.71 16 7 O -0.59 -28.48 15.57 -4.46 -0.07 -28.55 16 8 N -0.55 -25.94 2.57 -640.07 -1.64 -27.59 16 9 C 0.25 12.88 4.68 85.63 0.40 13.28 16 10 C -0.55 -29.57 9.30 25.60 0.24 -29.33 16 11 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 12 C 0.03 1.38 5.46 84.65 0.46 1.84 16 13 N -0.92 -51.00 13.29 21.44 0.28 -50.72 16 14 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 C 0.11 4.63 5.19 38.14 0.20 4.83 16 19 C -0.09 -3.59 8.91 22.39 0.20 -3.39 16 20 C -0.19 -6.30 9.03 22.35 0.20 -6.10 16 21 C 0.11 3.66 6.69 22.50 0.15 3.81 16 22 O -0.32 -9.01 10.14 -93.28 -0.95 -9.95 16 23 C 0.04 0.81 5.46 71.98 0.39 1.20 16 24 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 25 C -0.14 -4.57 9.98 22.35 0.22 -4.35 16 26 C -0.10 -3.86 9.30 22.39 0.21 -3.66 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.13 2.25 8.05 -2.91 -0.02 2.22 16 31 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 32 H 0.12 4.09 7.52 -2.92 -0.02 4.07 16 33 H 0.13 5.59 6.30 -2.91 -0.02 5.57 16 34 H 0.04 1.87 6.35 -2.39 -0.02 1.85 16 35 H 0.03 1.33 7.30 -2.39 -0.02 1.31 16 36 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.11 4.59 8.03 -2.91 -0.02 4.56 16 38 H 0.15 4.02 6.29 -2.91 -0.02 4.01 16 39 H 0.07 1.26 7.65 -2.39 -0.02 1.24 16 40 H 0.07 1.26 7.67 -2.38 -0.02 1.24 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 45 H 0.13 4.93 7.78 -2.91 -0.02 4.90 16 Total: -1.00 -66.27 385.99 6.29 -59.97 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.97 Total: 26.66 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 5.67 Total: -14.43 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.36 Total: -78.30 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.02 Total: -38.50 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -66.27 6.29 -59.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103960605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.306 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds