Wall clock time and date at job start Tue Mar 31 2020 10:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47261 * 2 1 4 4 C 1.46903 * 110.99959 * 297.40461 * 3 2 1 5 5 C 1.53003 * 109.47360 * 293.69468 * 4 3 2 6 6 C 1.50695 * 109.47119 * 185.29585 * 5 4 3 7 7 H 1.07990 * 120.00396 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99577 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99792 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99876 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46933 * 90.00349 * 10 8 6 12 12 H 1.48507 * 109.46765 * 209.99778 * 10 8 6 13 13 H 1.48499 * 109.47482 * 330.00006 * 10 8 6 14 14 C 1.46901 * 111.00262 * 61.35777 * 3 2 1 15 15 H 1.09006 * 109.47157 * 296.04755 * 14 3 2 16 16 C 1.53000 * 109.47104 * 176.05244 * 14 3 2 17 17 C 1.50697 * 109.46948 * 56.04678 * 14 3 2 18 18 C 1.38255 * 119.99737 * 40.02942 * 17 14 3 19 19 C 1.38217 * 119.99947 * 180.02562 * 18 17 14 20 20 C 1.38257 * 119.99778 * 359.94942 * 19 18 17 21 21 C 1.38217 * 120.00280 * 359.78901 * 20 19 18 22 22 C 1.50696 * 120.00175 * 180.25803 * 21 20 19 23 23 F 1.39899 * 109.46968 * 270.23066 * 22 21 20 24 24 F 1.39895 * 109.47312 * 30.23549 * 22 21 20 25 25 F 1.39899 * 109.47040 * 150.23618 * 22 21 20 26 26 C 1.38208 * 120.00157 * 219.99639 * 17 14 3 27 27 H 1.08998 * 109.47110 * 65.05788 * 1 2 3 28 28 H 1.09001 * 109.46651 * 185.05828 * 1 2 3 29 29 H 1.08998 * 109.47029 * 305.05529 * 1 2 3 30 30 H 1.09002 * 109.47064 * 239.99425 * 2 1 3 31 31 H 1.08999 * 109.47160 * 119.99855 * 2 1 3 32 32 H 1.09007 * 109.46745 * 53.68723 * 4 3 2 33 33 H 1.08998 * 109.47349 * 173.69048 * 4 3 2 34 34 H 1.09000 * 109.46282 * 305.29549 * 5 4 3 35 35 H 1.09003 * 109.46943 * 65.29129 * 5 4 3 36 36 H 0.97001 * 120.00008 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47680 * 59.99826 * 16 14 3 38 38 H 1.09002 * 109.46746 * 179.97438 * 16 14 3 39 39 H 1.09006 * 109.46714 * 299.99782 * 16 14 3 40 40 H 1.07997 * 120.00336 * 359.97088 * 18 17 14 41 41 H 1.08001 * 120.00225 * 179.97438 * 19 18 17 42 42 H 1.08005 * 119.99902 * 180.02562 * 20 19 18 43 43 H 1.08001 * 119.99827 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6000 2.0917 -1.2176 5 6 2.2894 1.4678 -2.4327 6 6 1.9618 2.2724 -3.6641 7 1 1.3253 3.1414 -3.5878 8 6 2.4748 1.8988 -4.8882 9 7 2.1894 2.6012 -5.9628 10 14 3.5764 0.3960 -5.0200 11 1 2.7444 -0.8062 -5.2807 12 1 4.5383 0.5836 -6.1358 13 1 4.3221 0.2157 -3.7486 14 6 1.5754 2.1005 1.2036 15 1 0.4880 2.1762 1.2007 16 6 2.1843 3.5040 1.2164 17 6 2.0232 1.3473 2.4297 18 6 3.2772 0.7660 2.4642 19 6 3.6877 0.0748 3.5885 20 6 2.8447 -0.0344 4.6789 21 6 1.5932 0.5513 4.6465 22 6 0.6767 0.4372 5.8372 23 9 -0.1105 -0.7125 5.7113 24 9 1.4398 0.3541 7.0068 25 9 -0.1501 1.5640 5.8989 26 6 1.1807 1.2382 3.5198 27 1 -0.3633 0.4334 -0.9318 28 1 -0.3633 -1.0237 0.0906 29 1 -0.3633 0.5902 0.8412 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5190 2.0093 -1.3311 33 1 1.8784 3.1428 -1.1418 34 1 3.3681 1.4651 -2.2767 35 1 1.9386 0.4441 -2.5635 36 1 2.5500 2.3383 -6.8240 37 1 1.8605 4.0487 0.3296 38 1 1.8543 4.0351 2.1093 39 1 3.2717 3.4283 1.2193 40 1 3.9356 0.8513 1.6124 41 1 4.6671 -0.3796 3.6154 42 1 3.1657 -0.5742 5.5577 43 1 0.2012 1.6924 3.4928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123296786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:32 Heat of formation + Delta-G solvation = -126.838005 kcal Electronic energy + Delta-G solvation = -26815.335946 eV Core-core repulsion = 22638.370855 eV Total energy + Delta-G solvation = -4176.965090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.38089 -47.90278 -47.83963 -40.17243 -37.92586 -33.65091 -32.61789 -31.99173 -30.94081 -29.84927 -27.79376 -26.25168 -25.01795 -23.46695 -22.71490 -22.20773 -20.60335 -19.10838 -18.70901 -18.57075 -17.94773 -16.88591 -16.44502 -16.00852 -15.31116 -15.04944 -14.91240 -14.70664 -14.47626 -14.31392 -14.18598 -14.08148 -14.00693 -13.80476 -13.59930 -13.08001 -12.85519 -12.71739 -12.63007 -12.52474 -12.22007 -12.11628 -11.65073 -11.60443 -11.36268 -11.18552 -11.12108 -10.73218 -10.56527 -9.93537 -9.81012 -9.74774 -9.34668 -9.20947 -8.99352 -8.54383 -7.89377 -6.06047 -4.04146 0.77271 1.04200 2.44043 3.29733 3.30040 3.37963 3.42691 3.49423 3.78896 4.19688 4.23784 4.44398 4.50976 4.62611 4.84857 5.12285 5.15925 5.22121 5.28133 5.29300 5.33674 5.52837 5.56784 5.61995 5.67311 5.74730 5.86378 5.97870 6.04740 6.07646 6.14336 6.18879 6.29550 6.36333 6.39087 6.53073 6.59875 6.78700 7.14477 7.25763 7.54537 7.60587 7.82489 8.51182 8.98254 9.56567 11.07364 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.002956 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.644297 B = 9468.619048 C = 9618.048961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.063 3.937 5 C -0.005 4.005 6 C -0.521 4.521 7 H 0.070 0.930 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.263 1.263 14 C 0.114 3.886 15 H 0.052 0.948 16 C -0.144 4.144 17 C -0.067 4.067 18 C -0.059 4.059 19 C -0.125 4.125 20 C -0.078 4.078 21 C -0.188 4.188 22 C 0.509 3.491 23 F -0.178 7.178 24 F -0.179 7.179 25 F -0.178 7.178 26 C -0.071 4.071 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.009 0.991 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 -5.091 24.075 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.082 4.082 3 N -0.255 5.255 4 C -0.063 4.063 5 C -0.043 4.043 6 C -0.559 4.559 7 H 0.088 0.912 8 C -0.134 4.134 9 N -0.543 5.543 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.187 1.187 14 C 0.005 3.995 15 H 0.069 0.931 16 C -0.201 4.201 17 C -0.067 4.067 18 C -0.077 4.077 19 C -0.143 4.143 20 C -0.096 4.096 21 C -0.189 4.189 22 C 0.455 3.545 23 F -0.160 7.160 24 F -0.161 7.161 25 F -0.160 7.160 26 C -0.089 4.089 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.296 -5.078 23.912 24.447 hybrid contribution -0.611 -0.829 -0.013 1.029 sum -0.315 -5.907 23.899 24.620 Atomic orbital electron populations 1.22392 0.98639 1.01755 1.02198 1.22193 0.92833 0.90749 1.02454 1.62430 1.59288 1.02030 1.01765 1.22267 0.97665 0.98181 0.88195 1.19541 0.96489 0.95790 0.92449 1.21075 1.31074 1.13081 0.90680 0.91171 1.24994 0.96012 0.96637 0.95707 1.69911 1.45498 1.39752 0.99136 0.86781 0.81076 0.83464 0.78014 1.20434 1.21468 1.18738 1.20564 0.97579 0.93469 0.87851 0.93052 1.21907 1.01993 0.94217 1.01976 1.19877 0.94156 0.97882 0.94825 1.21451 0.95533 0.93036 0.97699 1.21206 1.00009 1.00040 0.93005 1.20892 0.92065 0.97412 0.99235 1.19832 0.96552 1.07720 0.94783 1.18348 0.79297 0.73750 0.83119 1.93224 1.76017 1.50738 1.95982 1.93176 1.75523 1.95991 1.51386 1.93188 1.73937 1.52189 1.96642 1.20784 0.99932 0.96613 0.91605 0.91613 0.92662 0.93100 0.90016 0.91531 0.95084 0.90830 0.95699 0.97237 0.92739 0.91148 0.92603 0.91540 0.83784 0.84904 0.85129 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 9.23 37.16 0.34 -2.28 16 2 C 0.05 0.66 5.42 -3.83 -0.02 0.64 16 3 N -0.53 -8.13 3.92 -228.03 -0.89 -9.02 16 4 C 0.06 1.18 4.52 -3.82 -0.02 1.17 16 5 C 0.00 -0.11 3.84 -27.88 -0.11 -0.22 16 6 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 7 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 10 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 14 C 0.11 1.46 1.81 -68.87 -0.12 1.33 16 15 H 0.05 0.67 6.30 -51.93 -0.33 0.34 16 16 C -0.14 -1.75 8.97 37.16 0.33 -1.42 16 17 C -0.07 -0.77 3.75 -104.63 -0.39 -1.16 16 18 C -0.06 -0.64 8.08 -39.58 -0.32 -0.96 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.08 -0.72 9.40 -39.58 -0.37 -1.09 16 21 C -0.19 -1.94 5.45 -104.62 -0.57 -2.51 16 22 C 0.51 5.27 3.36 36.00 0.12 5.39 16 23 F -0.18 -1.96 17.30 2.25 0.04 -1.92 16 24 F -0.18 -1.82 16.47 2.25 0.04 -1.79 16 25 F -0.18 -1.92 16.46 2.25 0.04 -1.88 16 26 C -0.07 -0.76 9.02 -39.58 -0.36 -1.12 16 27 H 0.06 1.02 6.59 -51.93 -0.34 0.67 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.65 6.27 -51.93 -0.33 0.33 16 30 H 0.08 1.32 6.48 -51.93 -0.34 0.98 16 31 H 0.07 0.88 6.08 -51.93 -0.32 0.56 16 32 H 0.03 0.59 6.18 -51.93 -0.32 0.27 16 33 H 0.07 1.39 5.82 -51.93 -0.30 1.09 16 34 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 35 H 0.01 0.22 6.19 -51.93 -0.32 -0.11 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 0.93 6.19 -51.93 -0.32 0.61 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.14 1.64 7.72 -52.49 -0.41 1.23 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.13 0.98 7.61 -52.48 -0.40 0.58 16 43 H 0.13 1.30 7.58 -52.49 -0.40 0.90 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -29.46 349.35 -7.49 -36.95 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.77 Total: -0.84 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.31 Total: -16.72 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.12 Total: -35.84 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.46 -7.49 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123296786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.889 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds