Wall clock time and date at job start Tue Mar 31 2020 10:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47261 * 2 1 4 4 C 1.46903 * 110.99959 * 297.40461 * 3 2 1 5 5 C 1.53003 * 109.47360 * 293.69468 * 4 3 2 6 6 C 1.50695 * 109.47119 * 185.29585 * 5 4 3 7 7 H 1.07990 * 120.00396 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99577 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99792 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99876 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46933 * 90.00349 * 10 8 6 12 12 H 1.48507 * 109.46765 * 209.99778 * 10 8 6 13 13 H 1.48499 * 109.47482 * 330.00006 * 10 8 6 14 14 C 1.46901 * 111.00262 * 61.35777 * 3 2 1 15 15 H 1.09006 * 109.47157 * 296.04755 * 14 3 2 16 16 C 1.53000 * 109.47104 * 176.05244 * 14 3 2 17 17 C 1.50697 * 109.46948 * 56.04678 * 14 3 2 18 18 C 1.38255 * 119.99737 * 40.02942 * 17 14 3 19 19 C 1.38217 * 119.99947 * 180.02562 * 18 17 14 20 20 C 1.38257 * 119.99778 * 359.94942 * 19 18 17 21 21 C 1.38217 * 120.00280 * 359.78901 * 20 19 18 22 22 C 1.50696 * 120.00175 * 180.25803 * 21 20 19 23 23 F 1.39899 * 109.46968 * 270.23066 * 22 21 20 24 24 F 1.39895 * 109.47312 * 30.23549 * 22 21 20 25 25 F 1.39899 * 109.47040 * 150.23618 * 22 21 20 26 26 C 1.38208 * 120.00157 * 219.99639 * 17 14 3 27 27 H 1.08998 * 109.47110 * 65.05788 * 1 2 3 28 28 H 1.09001 * 109.46651 * 185.05828 * 1 2 3 29 29 H 1.08998 * 109.47029 * 305.05529 * 1 2 3 30 30 H 1.09002 * 109.47064 * 239.99425 * 2 1 3 31 31 H 1.08999 * 109.47160 * 119.99855 * 2 1 3 32 32 H 1.09007 * 109.46745 * 53.68723 * 4 3 2 33 33 H 1.08998 * 109.47349 * 173.69048 * 4 3 2 34 34 H 1.09000 * 109.46282 * 305.29549 * 5 4 3 35 35 H 1.09003 * 109.46943 * 65.29129 * 5 4 3 36 36 H 0.97001 * 120.00008 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47680 * 59.99826 * 16 14 3 38 38 H 1.09002 * 109.46746 * 179.97438 * 16 14 3 39 39 H 1.09006 * 109.46714 * 299.99782 * 16 14 3 40 40 H 1.07997 * 120.00336 * 359.97088 * 18 17 14 41 41 H 1.08001 * 120.00225 * 179.97438 * 19 18 17 42 42 H 1.08005 * 119.99902 * 180.02562 * 20 19 18 43 43 H 1.08001 * 119.99827 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6000 2.0917 -1.2176 5 6 2.2894 1.4678 -2.4327 6 6 1.9618 2.2724 -3.6641 7 1 1.3253 3.1414 -3.5878 8 6 2.4748 1.8988 -4.8882 9 7 2.1894 2.6012 -5.9628 10 14 3.5764 0.3960 -5.0200 11 1 2.7444 -0.8062 -5.2807 12 1 4.5383 0.5836 -6.1358 13 1 4.3221 0.2157 -3.7486 14 6 1.5754 2.1005 1.2036 15 1 0.4880 2.1762 1.2007 16 6 2.1843 3.5040 1.2164 17 6 2.0232 1.3473 2.4297 18 6 3.2772 0.7660 2.4642 19 6 3.6877 0.0748 3.5885 20 6 2.8447 -0.0344 4.6789 21 6 1.5932 0.5513 4.6465 22 6 0.6767 0.4372 5.8372 23 9 -0.1105 -0.7125 5.7113 24 9 1.4398 0.3541 7.0068 25 9 -0.1501 1.5640 5.8989 26 6 1.1807 1.2382 3.5198 27 1 -0.3633 0.4334 -0.9318 28 1 -0.3633 -1.0237 0.0906 29 1 -0.3633 0.5902 0.8412 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5190 2.0093 -1.3311 33 1 1.8784 3.1428 -1.1418 34 1 3.3681 1.4651 -2.2767 35 1 1.9386 0.4441 -2.5635 36 1 2.5500 2.3383 -6.8240 37 1 1.8605 4.0487 0.3296 38 1 1.8543 4.0351 2.1093 39 1 3.2717 3.4283 1.2193 40 1 3.9356 0.8513 1.6124 41 1 4.6671 -0.3796 3.6154 42 1 3.1657 -0.5742 5.5577 43 1 0.2012 1.6924 3.4928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123296786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:31 Heat of formation + Delta-G solvation = -142.064695 kcal Electronic energy + Delta-G solvation = -26815.996224 eV Core-core repulsion = 22638.370855 eV Total energy + Delta-G solvation = -4177.625369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.18669 -48.70417 -48.65662 -41.08674 -39.02625 -35.36301 -34.04209 -32.77591 -32.46316 -31.04475 -29.04695 -27.09863 -26.55751 -24.51477 -23.93792 -23.17471 -21.87377 -20.38347 -19.51635 -19.38811 -19.07303 -18.66786 -17.32672 -17.07975 -16.51427 -16.26824 -16.01068 -15.76983 -15.53666 -15.40036 -15.11917 -14.96681 -14.84007 -14.81848 -14.74023 -14.52588 -14.05060 -13.99240 -13.83627 -13.57148 -13.41999 -13.18683 -13.12434 -12.77560 -12.57125 -12.40500 -12.20254 -12.04165 -11.93574 -11.74234 -11.48481 -11.37342 -11.21254 -10.71959 -10.11783 -9.81625 -9.15427 -8.27619 -6.31096 -0.01237 0.27346 1.37275 1.39653 1.52277 1.64577 2.38217 2.50526 2.69750 2.95902 3.08399 3.08593 3.41219 3.63060 3.87525 4.07904 4.13150 4.22574 4.25532 4.32605 4.43065 4.45733 4.52163 4.56419 4.60254 4.71481 4.80989 4.89361 4.92512 5.01497 5.08032 5.09463 5.16911 5.25242 5.34938 5.39137 5.43506 5.52455 5.57473 5.68587 5.82721 6.17771 6.27873 6.35016 6.77344 7.33622 8.89160 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.002956 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.644297 B = 9468.619048 C = 9618.048961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 N -0.530 5.530 4 C 0.076 3.924 5 C 0.003 3.997 6 C -0.529 4.529 7 H 0.032 0.968 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.244 1.244 14 C 0.116 3.884 15 H 0.051 0.949 16 C -0.141 4.141 17 C -0.075 4.075 18 C -0.067 4.067 19 C -0.117 4.117 20 C -0.074 4.074 21 C -0.193 4.193 22 C 0.512 3.488 23 F -0.183 7.183 24 F -0.178 7.178 25 F -0.182 7.182 26 C -0.075 4.075 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.014 0.986 36 H 0.265 0.735 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -6.988 26.366 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.051 4.051 5 C -0.034 4.034 6 C -0.567 4.567 7 H 0.050 0.950 8 C -0.191 4.191 9 N -0.593 5.593 10 Si 0.773 3.227 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.168 1.168 14 C 0.008 3.992 15 H 0.069 0.931 16 C -0.198 4.198 17 C -0.076 4.076 18 C -0.085 4.085 19 C -0.135 4.135 20 C -0.092 4.092 21 C -0.195 4.195 22 C 0.458 3.542 23 F -0.164 7.164 24 F -0.159 7.159 25 F -0.163 7.163 26 C -0.093 4.093 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.176 0.824 42 H 0.169 0.831 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.445 -6.975 26.235 27.184 hybrid contribution -1.019 -0.177 -0.652 1.223 sum 0.426 -7.152 25.582 26.566 Atomic orbital electron populations 1.22332 0.98085 1.02697 1.01348 1.22206 0.93283 0.90090 1.02560 1.62324 1.59458 1.02385 1.01249 1.21915 0.96678 0.97924 0.88557 1.19397 0.96584 0.95350 0.92113 1.21435 1.30028 1.12371 0.92905 0.94995 1.25966 0.97772 1.00133 0.95234 1.70067 1.47309 1.42057 0.99910 0.85668 0.79093 0.79236 0.78722 1.19388 1.21181 1.16777 1.20557 0.97590 0.93670 0.87349 0.93108 1.21884 1.01820 0.94040 1.02104 1.19672 0.94806 0.98757 0.94315 1.21481 0.95175 0.93557 0.98279 1.21453 1.00941 0.99063 0.92029 1.21182 0.91436 0.96695 0.99929 1.19901 0.97063 1.07981 0.94521 1.18339 0.79189 0.73470 0.83230 1.93217 1.76184 1.50979 1.96012 1.93179 1.75425 1.95966 1.51323 1.93182 1.74103 1.52391 1.96668 1.20810 1.00089 0.96821 0.91608 0.93872 0.91146 0.92176 0.91585 0.89626 0.95833 0.91391 0.95872 0.96744 0.92569 0.92708 0.90774 0.91728 0.84428 0.82365 0.83124 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.87 9.23 71.98 0.66 -4.21 16 2 C 0.05 1.28 5.42 86.30 0.47 1.74 16 3 N -0.53 -15.72 3.92 -875.36 -3.43 -19.15 16 4 C 0.08 2.89 4.52 86.30 0.39 3.28 16 5 C 0.00 0.15 3.84 29.85 0.11 0.27 16 6 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16 7 H 0.03 2.00 7.99 -2.92 -0.02 1.98 16 8 C 0.01 0.33 5.47 84.66 0.46 0.79 16 9 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 10 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 14 C 0.12 2.84 1.81 44.17 0.08 2.92 16 15 H 0.05 1.26 6.30 -2.38 -0.02 1.25 16 16 C -0.14 -3.33 8.97 71.98 0.65 -2.69 16 17 C -0.08 -1.56 3.75 -19.87 -0.07 -1.64 16 18 C -0.07 -1.27 8.08 22.27 0.18 -1.09 16 19 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 20 C -0.07 -1.13 9.40 22.27 0.21 -0.92 16 21 C -0.19 -3.51 5.45 -19.87 -0.11 -3.62 16 22 C 0.51 9.50 3.36 71.23 0.24 9.74 16 23 F -0.18 -3.65 17.30 44.97 0.78 -2.88 16 24 F -0.18 -3.20 16.47 44.97 0.74 -2.46 16 25 F -0.18 -3.61 16.46 44.97 0.74 -2.87 16 26 C -0.07 -1.45 9.02 22.27 0.20 -1.25 16 27 H 0.04 1.32 6.59 -2.39 -0.02 1.30 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.45 6.27 -2.39 -0.01 1.43 16 30 H 0.07 2.03 6.48 -2.39 -0.02 2.01 16 31 H 0.09 2.05 6.08 -2.39 -0.01 2.04 16 32 H 0.02 0.92 6.18 -2.38 -0.01 0.90 16 33 H 0.07 2.63 5.82 -2.39 -0.01 2.61 16 34 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 35 H 0.01 0.65 6.19 -2.39 -0.01 0.63 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.05 1.45 6.19 -2.39 -0.01 1.44 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.14 2.83 7.72 -2.91 -0.02 2.80 16 41 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.15 1.68 7.61 -2.91 -0.02 1.66 16 43 H 0.13 2.44 7.58 -2.91 -0.02 2.42 16 Total: -1.00 -64.08 349.35 5.93 -58.15 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.77 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.94 Total: -28.14 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.13 Total: -78.58 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 2.26 Total: -8.21 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -64.08 5.93 -58.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123296786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.915 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds