Wall clock time and date at job start Tue Mar 31 2020 10:40:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46894 * 109.47261 * 2 1
4 4 C 1.46903 * 110.99959 * 297.40461 * 3 2 1
5 5 C 1.53003 * 109.47360 * 293.69468 * 4 3 2
6 6 C 1.50695 * 109.47119 * 185.29585 * 5 4 3
7 7 H 1.07990 * 120.00396 * 359.97438 * 6 5 4
8 8 C 1.37886 * 119.99577 * 179.97438 * 6 5 4
9 9 N 1.31510 * 119.99792 * 180.02562 * 8 6 5
10 10 Si 1.86800 * 119.99876 * 359.97438 * 8 6 5
11 11 H 1.48500 * 109.46933 * 90.00349 * 10 8 6
12 12 H 1.48507 * 109.46765 * 209.99778 * 10 8 6
13 13 H 1.48499 * 109.47482 * 330.00006 * 10 8 6
14 14 C 1.46901 * 111.00262 * 61.35777 * 3 2 1
15 15 H 1.09006 * 109.47157 * 296.04755 * 14 3 2
16 16 C 1.53000 * 109.47104 * 176.05244 * 14 3 2
17 17 C 1.50697 * 109.46948 * 56.04678 * 14 3 2
18 18 C 1.38255 * 119.99737 * 40.02942 * 17 14 3
19 19 C 1.38217 * 119.99947 * 180.02562 * 18 17 14
20 20 C 1.38257 * 119.99778 * 359.94942 * 19 18 17
21 21 C 1.38217 * 120.00280 * 359.78901 * 20 19 18
22 22 C 1.50696 * 120.00175 * 180.25803 * 21 20 19
23 23 F 1.39899 * 109.46968 * 270.23066 * 22 21 20
24 24 F 1.39895 * 109.47312 * 30.23549 * 22 21 20
25 25 F 1.39899 * 109.47040 * 150.23618 * 22 21 20
26 26 C 1.38208 * 120.00157 * 219.99639 * 17 14 3
27 27 H 1.08998 * 109.47110 * 65.05788 * 1 2 3
28 28 H 1.09001 * 109.46651 * 185.05828 * 1 2 3
29 29 H 1.08998 * 109.47029 * 305.05529 * 1 2 3
30 30 H 1.09002 * 109.47064 * 239.99425 * 2 1 3
31 31 H 1.08999 * 109.47160 * 119.99855 * 2 1 3
32 32 H 1.09007 * 109.46745 * 53.68723 * 4 3 2
33 33 H 1.08998 * 109.47349 * 173.69048 * 4 3 2
34 34 H 1.09000 * 109.46282 * 305.29549 * 5 4 3
35 35 H 1.09003 * 109.46943 * 65.29129 * 5 4 3
36 36 H 0.97001 * 120.00008 * 180.02562 * 9 8 6
37 37 H 1.08996 * 109.47680 * 59.99826 * 16 14 3
38 38 H 1.09002 * 109.46746 * 179.97438 * 16 14 3
39 39 H 1.09006 * 109.46714 * 299.99782 * 16 14 3
40 40 H 1.07997 * 120.00336 * 359.97088 * 18 17 14
41 41 H 1.08001 * 120.00225 * 179.97438 * 19 18 17
42 42 H 1.08005 * 119.99902 * 180.02562 * 20 19 18
43 43 H 1.08001 * 119.99827 * 0.02562 * 26 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.6000 2.0917 -1.2176
5 6 2.2894 1.4678 -2.4327
6 6 1.9618 2.2724 -3.6641
7 1 1.3253 3.1414 -3.5878
8 6 2.4748 1.8988 -4.8882
9 7 2.1894 2.6012 -5.9628
10 14 3.5764 0.3960 -5.0200
11 1 2.7444 -0.8062 -5.2807
12 1 4.5383 0.5836 -6.1358
13 1 4.3221 0.2157 -3.7486
14 6 1.5754 2.1005 1.2036
15 1 0.4880 2.1762 1.2007
16 6 2.1843 3.5040 1.2164
17 6 2.0232 1.3473 2.4297
18 6 3.2772 0.7660 2.4642
19 6 3.6877 0.0748 3.5885
20 6 2.8447 -0.0344 4.6789
21 6 1.5932 0.5513 4.6465
22 6 0.6767 0.4372 5.8372
23 9 -0.1105 -0.7125 5.7113
24 9 1.4398 0.3541 7.0068
25 9 -0.1501 1.5640 5.8989
26 6 1.1807 1.2382 3.5198
27 1 -0.3633 0.4334 -0.9318
28 1 -0.3633 -1.0237 0.0906
29 1 -0.3633 0.5902 0.8412
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 0.5190 2.0093 -1.3311
33 1 1.8784 3.1428 -1.1418
34 1 3.3681 1.4651 -2.2767
35 1 1.9386 0.4441 -2.5635
36 1 2.5500 2.3383 -6.8240
37 1 1.8605 4.0487 0.3296
38 1 1.8543 4.0351 2.1093
39 1 3.2717 3.4283 1.2193
40 1 3.9356 0.8513 1.6124
41 1 4.6671 -0.3796 3.6154
42 1 3.1657 -0.5742 5.5577
43 1 0.2012 1.6924 3.4928
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000123296786.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:31
Heat of formation + Delta-G solvation = -142.064695 kcal
Electronic energy + Delta-G solvation = -26815.996224 eV
Core-core repulsion = 22638.370855 eV
Total energy + Delta-G solvation = -4177.625369 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.151 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-51.18669 -48.70417 -48.65662 -41.08674 -39.02625 -35.36301 -34.04209 -32.77591
-32.46316 -31.04475 -29.04695 -27.09863 -26.55751 -24.51477 -23.93792 -23.17471
-21.87377 -20.38347 -19.51635 -19.38811 -19.07303 -18.66786 -17.32672 -17.07975
-16.51427 -16.26824 -16.01068 -15.76983 -15.53666 -15.40036 -15.11917 -14.96681
-14.84007 -14.81848 -14.74023 -14.52588 -14.05060 -13.99240 -13.83627 -13.57148
-13.41999 -13.18683 -13.12434 -12.77560 -12.57125 -12.40500 -12.20254 -12.04165
-11.93574 -11.74234 -11.48481 -11.37342 -11.21254 -10.71959 -10.11783 -9.81625
-9.15427 -8.27619 -6.31096 -0.01237 0.27346 1.37275 1.39653 1.52277
1.64577 2.38217 2.50526 2.69750 2.95902 3.08399 3.08593 3.41219
3.63060 3.87525 4.07904 4.13150 4.22574 4.25532 4.32605 4.43065
4.45733 4.52163 4.56419 4.60254 4.71481 4.80989 4.89361 4.92512
5.01497 5.08032 5.09463 5.16911 5.25242 5.34938 5.39137 5.43506
5.52455 5.57473 5.68587 5.82721 6.17771 6.27873 6.35016 6.77344
7.33622 8.89160
Molecular weight = 315.15amu
Principal moments of inertia in cm(-1)
A = 0.026343 B = 0.002956 C = 0.002910
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1062.644297 B = 9468.619048 C = 9618.048961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.046 3.954
3 N -0.530 5.530
4 C 0.076 3.924
5 C 0.003 3.997
6 C -0.529 4.529
7 H 0.032 0.968
8 C 0.006 3.994
9 N -0.952 5.952
10 Si 0.949 3.051
11 H -0.269 1.269
12 H -0.286 1.286
13 H -0.244 1.244
14 C 0.116 3.884
15 H 0.051 0.949
16 C -0.141 4.141
17 C -0.075 4.075
18 C -0.067 4.067
19 C -0.117 4.117
20 C -0.074 4.074
21 C -0.193 4.193
22 C 0.512 3.488
23 F -0.183 7.183
24 F -0.178 7.178
25 F -0.182 7.182
26 C -0.075 4.075
27 H 0.042 0.958
28 H 0.070 0.930
29 H 0.059 0.941
30 H 0.066 0.934
31 H 0.085 0.915
32 H 0.023 0.977
33 H 0.068 0.932
34 H 0.023 0.977
35 H 0.014 0.986
36 H 0.265 0.735
37 H 0.054 0.946
38 H 0.073 0.927
39 H 0.064 0.936
40 H 0.138 0.862
41 H 0.159 0.841
42 H 0.151 0.849
43 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.929 -6.988 26.366 27.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C -0.081 4.081
3 N -0.254 5.254
4 C -0.051 4.051
5 C -0.034 4.034
6 C -0.567 4.567
7 H 0.050 0.950
8 C -0.191 4.191
9 N -0.593 5.593
10 Si 0.773 3.227
11 H -0.194 1.194
12 H -0.212 1.212
13 H -0.168 1.168
14 C 0.008 3.992
15 H 0.069 0.931
16 C -0.198 4.198
17 C -0.076 4.076
18 C -0.085 4.085
19 C -0.135 4.135
20 C -0.092 4.092
21 C -0.195 4.195
22 C 0.458 3.542
23 F -0.164 7.164
24 F -0.159 7.159
25 F -0.163 7.163
26 C -0.093 4.093
27 H 0.061 0.939
28 H 0.089 0.911
29 H 0.078 0.922
30 H 0.084 0.916
31 H 0.104 0.896
32 H 0.042 0.958
33 H 0.086 0.914
34 H 0.041 0.959
35 H 0.033 0.967
36 H 0.074 0.926
37 H 0.073 0.927
38 H 0.092 0.908
39 H 0.083 0.917
40 H 0.156 0.844
41 H 0.176 0.824
42 H 0.169 0.831
43 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 1.445 -6.975 26.235 27.184
hybrid contribution -1.019 -0.177 -0.652 1.223
sum 0.426 -7.152 25.582 26.566
Atomic orbital electron populations
1.22332 0.98085 1.02697 1.01348 1.22206 0.93283 0.90090 1.02560
1.62324 1.59458 1.02385 1.01249 1.21915 0.96678 0.97924 0.88557
1.19397 0.96584 0.95350 0.92113 1.21435 1.30028 1.12371 0.92905
0.94995 1.25966 0.97772 1.00133 0.95234 1.70067 1.47309 1.42057
0.99910 0.85668 0.79093 0.79236 0.78722 1.19388 1.21181 1.16777
1.20557 0.97590 0.93670 0.87349 0.93108 1.21884 1.01820 0.94040
1.02104 1.19672 0.94806 0.98757 0.94315 1.21481 0.95175 0.93557
0.98279 1.21453 1.00941 0.99063 0.92029 1.21182 0.91436 0.96695
0.99929 1.19901 0.97063 1.07981 0.94521 1.18339 0.79189 0.73470
0.83230 1.93217 1.76184 1.50979 1.96012 1.93179 1.75425 1.95966
1.51323 1.93182 1.74103 1.52391 1.96668 1.20810 1.00089 0.96821
0.91608 0.93872 0.91146 0.92176 0.91585 0.89626 0.95833 0.91391
0.95872 0.96744 0.92569 0.92708 0.90774 0.91728 0.84428 0.82365
0.83124 0.84732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.87 9.23 71.98 0.66 -4.21 16
2 C 0.05 1.28 5.42 86.30 0.47 1.74 16
3 N -0.53 -15.72 3.92 -875.36 -3.43 -19.15 16
4 C 0.08 2.89 4.52 86.30 0.39 3.28 16
5 C 0.00 0.15 3.84 29.85 0.11 0.27 16
6 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16
7 H 0.03 2.00 7.99 -2.92 -0.02 1.98 16
8 C 0.01 0.33 5.47 84.66 0.46 0.79 16
9 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16
10 Si 0.95 44.11 27.47 68.60 1.88 46.00 16
11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16
13 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16
14 C 0.12 2.84 1.81 44.17 0.08 2.92 16
15 H 0.05 1.26 6.30 -2.38 -0.02 1.25 16
16 C -0.14 -3.33 8.97 71.98 0.65 -2.69 16
17 C -0.08 -1.56 3.75 -19.87 -0.07 -1.64 16
18 C -0.07 -1.27 8.08 22.27 0.18 -1.09 16
19 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16
20 C -0.07 -1.13 9.40 22.27 0.21 -0.92 16
21 C -0.19 -3.51 5.45 -19.87 -0.11 -3.62 16
22 C 0.51 9.50 3.36 71.23 0.24 9.74 16
23 F -0.18 -3.65 17.30 44.97 0.78 -2.88 16
24 F -0.18 -3.20 16.47 44.97 0.74 -2.46 16
25 F -0.18 -3.61 16.46 44.97 0.74 -2.87 16
26 C -0.07 -1.45 9.02 22.27 0.20 -1.25 16
27 H 0.04 1.32 6.59 -2.39 -0.02 1.30 16
28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
29 H 0.06 1.45 6.27 -2.39 -0.01 1.43 16
30 H 0.07 2.03 6.48 -2.39 -0.02 2.01 16
31 H 0.09 2.05 6.08 -2.39 -0.01 2.04 16
32 H 0.02 0.92 6.18 -2.38 -0.01 0.90 16
33 H 0.07 2.63 5.82 -2.39 -0.01 2.61 16
34 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16
35 H 0.01 0.65 6.19 -2.39 -0.01 0.63 16
36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
37 H 0.05 1.45 6.19 -2.39 -0.01 1.44 16
38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
39 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16
40 H 0.14 2.83 7.72 -2.91 -0.02 2.80 16
41 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16
42 H 0.15 1.68 7.61 -2.91 -0.02 1.66 16
43 H 0.13 2.44 7.58 -2.91 -0.02 2.42 16
Total: -1.00 -64.08 349.35 5.93 -58.15
By element:
Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.77 kcal
Atomic # 6 Polarization: -32.08 SS G_CDS: 3.94 Total: -28.14 kcal
Atomic # 7 Polarization: -75.45 SS G_CDS: -3.13 Total: -78.58 kcal
Atomic # 9 Polarization: -10.47 SS G_CDS: 2.26 Total: -8.21 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal
Total: -64.08 5.93 -58.15 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000123296786.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.915 kcal
(2) G-P(sol) polarization free energy of solvation -64.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.150 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.065 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds