Wall clock time and date at job start Tue Mar 31 2020 11:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 110.99824 * 2 1 4 4 C 1.50700 * 109.47044 * 293.95342 * 3 2 1 5 5 C 1.34514 * 125.78906 * 89.72021 * 4 3 2 6 6 C 1.41377 * 106.84285 * 179.88699 * 5 4 3 7 7 C 1.34513 * 106.84171 * 0.36791 * 6 5 4 8 8 O 1.34297 * 125.78989 * 270.02047 * 4 3 2 9 9 C 1.46896 * 111.00172 * 123.95760 * 2 1 3 10 10 C 1.50697 * 109.47382 * 66.04454 * 9 2 1 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 2 12 12 C 1.38255 * 120.11174 * 179.97438 * 11 10 9 13 13 C 1.38163 * 120.05063 * 359.76900 * 12 11 10 14 14 C 1.38710 * 119.94702 * 0.48231 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.76528 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 2 27 27 H 1.09001 * 109.47400 * 296.04422 * 1 2 3 28 28 H 1.09003 * 109.47007 * 56.04822 * 1 2 3 29 29 H 1.09005 * 109.47018 * 176.04044 * 1 2 3 30 30 H 1.08997 * 109.46881 * 53.95498 * 3 2 1 31 31 H 1.08998 * 109.47002 * 173.95308 * 3 2 1 32 32 H 1.08003 * 126.57734 * 0.02562 * 5 4 3 33 33 H 1.08002 * 126.58083 * 180.16563 * 6 5 4 34 34 H 1.07995 * 125.79841 * 179.75036 * 7 6 5 35 35 H 1.09005 * 109.46944 * 306.04467 * 9 2 1 36 36 H 1.09002 * 109.47398 * 186.04909 * 9 2 1 37 37 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 38 38 H 1.07991 * 119.97457 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.02763 * 180.24929 * 13 12 11 40 40 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 41 41 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 42 42 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 43 43 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 6 0.5163 2.7527 -1.5349 6 6 0.5920 3.2060 -2.8718 7 6 1.7505 2.7435 -3.3751 8 8 2.3792 2.0422 -2.4176 9 6 1.9954 -0.7660 1.1375 10 6 1.6369 -2.2204 0.9728 11 6 0.4504 -2.7028 1.4939 12 6 0.1184 -4.0365 1.3440 13 6 0.9697 -4.8897 0.6686 14 6 2.1629 -4.4094 0.1494 15 8 3.0042 -5.2478 -0.5111 16 6 2.5992 -6.6131 -0.6288 17 6 3.6648 -7.3967 -1.3978 18 6 3.2374 -8.8364 -1.5225 19 1 2.2993 -9.1601 -1.0963 20 6 4.0435 -9.7403 -2.1815 21 7 5.1856 -9.3460 -2.7009 22 14 3.5141 -11.5251 -2.3355 23 1 2.7227 -11.7010 -3.5797 24 1 4.7162 -12.3954 -2.3862 25 1 2.6822 -11.8975 -1.1631 26 6 2.4936 -3.0705 0.3009 27 1 -0.3634 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0253 -0.0710 30 1 1.5610 1.9273 0.8309 31 1 3.0796 1.3445 0.1083 32 1 -0.2862 2.9392 -0.8365 33 1 -0.1413 3.8056 -3.3907 34 1 2.1135 2.9077 -4.3789 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6611 1.1756 37 1 -0.2186 -2.0364 2.0182 38 1 -0.8091 -4.4107 1.7515 39 1 0.7080 -5.9306 0.5482 40 1 2.4781 -7.0432 0.3654 41 1 1.6519 -6.6661 -1.1655 42 1 3.7854 -6.9665 -2.3920 43 1 4.6123 -7.3438 -0.8617 44 1 5.7525 -9.9818 -3.1650 45 1 3.4202 -2.6932 -0.1059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162150778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:36 Heat of formation + Delta-G solvation = 2.926761 kcal Electronic energy + Delta-G solvation = -24748.491302 eV Core-core repulsion = 21119.009974 eV Total energy + Delta-G solvation = -3629.481328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.76035 -39.89654 -38.23979 -36.64016 -33.38398 -33.22350 -32.03770 -30.87438 -30.14143 -29.09133 -27.66053 -26.39321 -24.95353 -23.08394 -22.12220 -21.92153 -21.49796 -20.58244 -20.09459 -17.75732 -17.37239 -16.59828 -16.23739 -15.93019 -15.67539 -15.48843 -15.30802 -15.20076 -14.94562 -14.46733 -14.13191 -13.67690 -13.15240 -13.05263 -12.92094 -12.83929 -12.81351 -12.62323 -12.30657 -11.97943 -11.90229 -11.78859 -11.32701 -11.32226 -11.21544 -10.86565 -10.70539 -10.43024 -10.12124 -9.84182 -9.64615 -9.28846 -8.92955 -8.64486 -8.55007 -8.43782 -7.81431 -6.09284 -4.13899 1.35845 1.57066 1.69224 2.36727 2.78307 3.28060 3.33893 3.36731 3.66762 3.84920 4.12540 4.41049 4.42414 4.66208 4.77665 4.80106 4.88472 4.96110 5.02269 5.10485 5.22721 5.25667 5.27050 5.32802 5.44065 5.48683 5.56708 5.65558 5.71212 5.81125 5.85596 5.86755 6.05242 6.07802 6.19597 6.25236 6.55553 6.58871 6.59809 6.66590 6.74753 6.77351 6.95844 7.00007 7.52401 7.65776 7.82817 8.08674 8.25147 8.91693 9.50280 11.02304 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.002210 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.024624 B =12664.287744 C =13676.128714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.131 3.869 4 C 0.003 3.997 5 C -0.209 4.209 6 C -0.217 4.217 7 C -0.038 4.038 8 O -0.167 6.167 9 C 0.099 3.901 10 C -0.047 4.047 11 C -0.165 4.165 12 C -0.081 4.081 13 C -0.210 4.210 14 C 0.145 3.855 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.138 4.138 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.202 0.798 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 25.386 6.762 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.257 5.257 3 C 0.004 3.996 4 C -0.048 4.048 5 C -0.229 4.229 6 C -0.236 4.236 7 C -0.106 4.106 8 O -0.062 6.062 9 C -0.028 4.028 10 C -0.048 4.048 11 C -0.184 4.184 12 C -0.100 4.100 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.157 4.157 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.554 24.968 6.122 27.426 hybrid contribution -1.023 -0.675 0.442 1.303 sum -10.577 24.294 6.564 27.298 Atomic orbital electron populations 1.22587 0.86764 1.03454 1.00450 1.61888 1.08742 1.11521 1.43517 1.20467 1.01786 0.88253 0.89141 1.22183 0.92315 1.01859 0.88430 1.21574 0.99401 1.04296 0.97676 1.21801 0.99609 1.06417 0.95815 1.24069 0.94367 0.98052 0.94136 1.84059 1.44742 1.57984 1.19375 1.21030 1.00672 0.90024 0.91034 1.19270 0.94283 0.93896 0.97316 1.20766 0.97365 0.95704 1.04573 1.20835 0.98621 0.93201 0.97293 1.21389 0.95826 1.01261 1.04474 1.19191 0.89283 0.90676 0.91048 1.86179 1.44909 1.21865 1.69880 1.23322 1.00719 0.76554 1.00259 1.19124 0.93243 0.93226 0.95623 1.20969 1.05830 0.93021 1.36612 0.92385 1.24996 0.94834 0.99167 0.95234 1.69981 1.11269 1.35122 1.36366 0.86485 0.78132 0.84191 0.78563 1.20492 1.21047 1.19777 1.20256 1.01726 0.90573 1.03159 0.95572 0.91015 0.90247 0.91518 0.88744 0.83799 0.83589 0.78166 0.93516 0.89481 0.86791 0.86254 0.85291 0.93161 0.93169 0.95381 0.95385 0.92707 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.90 60.06 0.53 0.68 16 2 N -0.53 -5.46 4.74 -245.83 -1.17 -6.63 16 3 C 0.13 1.11 5.50 -4.97 -0.03 1.08 16 4 C 0.00 0.03 6.24 -35.62 -0.22 -0.19 16 5 C -0.21 -1.90 9.28 -39.70 -0.37 -2.27 16 6 C -0.22 -1.87 10.91 -39.71 -0.43 -2.30 16 7 C -0.04 -0.34 12.09 29.42 0.36 0.02 16 8 O -0.17 -1.89 10.65 5.70 0.06 -1.83 16 9 C 0.10 0.97 5.12 -4.98 -0.03 0.94 16 10 C -0.05 -0.59 4.88 -104.65 -0.51 -1.11 16 11 C -0.17 -1.96 7.96 -39.56 -0.31 -2.28 16 12 C -0.08 -1.06 10.04 -39.60 -0.40 -1.45 16 13 C -0.21 -3.33 9.04 -39.43 -0.36 -3.68 16 14 C 0.15 2.58 6.69 -39.22 -0.26 2.32 16 15 O -0.32 -6.65 10.14 -19.43 -0.20 -6.84 16 16 C 0.07 1.43 4.68 37.16 0.17 1.60 16 17 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 18 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 27 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.69 6.08 -51.93 -0.32 0.37 16 29 H 0.08 0.84 6.16 -51.93 -0.32 0.52 16 30 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.05 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 37 H 0.11 1.08 8.03 -52.49 -0.42 0.66 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -32.16 375.19 -9.50 -41.66 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.77 Total: -0.34 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -2.79 Total: -22.12 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: -0.43 Total: -32.55 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.14 Total: -8.67 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.16 -9.50 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162150778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.588 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds