Wall clock time and date at job start Tue Mar 31 2020 11:02:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46894 * 1
3 3 C 1.46904 * 110.99824 * 2 1
4 4 C 1.50700 * 109.47044 * 293.95342 * 3 2 1
5 5 C 1.34514 * 125.78906 * 89.72021 * 4 3 2
6 6 C 1.41377 * 106.84285 * 179.88699 * 5 4 3
7 7 C 1.34513 * 106.84171 * 0.36791 * 6 5 4
8 8 O 1.34297 * 125.78989 * 270.02047 * 4 3 2
9 9 C 1.46896 * 111.00172 * 123.95760 * 2 1 3
10 10 C 1.50697 * 109.47382 * 66.04454 * 9 2 1
11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 2
12 12 C 1.38255 * 120.11174 * 179.97438 * 11 10 9
13 13 C 1.38163 * 120.05063 * 359.76900 * 12 11 10
14 14 C 1.38710 * 119.94702 * 0.48231 * 13 12 11
15 15 O 1.35900 * 120.05544 * 179.76528 * 14 13 12
16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13
17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14
18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15
19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16
20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16
21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17
23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18
24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18
25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18
26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 2
27 27 H 1.09001 * 109.47400 * 296.04422 * 1 2 3
28 28 H 1.09003 * 109.47007 * 56.04822 * 1 2 3
29 29 H 1.09005 * 109.47018 * 176.04044 * 1 2 3
30 30 H 1.08997 * 109.46881 * 53.95498 * 3 2 1
31 31 H 1.08998 * 109.47002 * 173.95308 * 3 2 1
32 32 H 1.08003 * 126.57734 * 0.02562 * 5 4 3
33 33 H 1.08002 * 126.58083 * 180.16563 * 6 5 4
34 34 H 1.07995 * 125.79841 * 179.75036 * 7 6 5
35 35 H 1.09005 * 109.46944 * 306.04467 * 9 2 1
36 36 H 1.09002 * 109.47398 * 186.04909 * 9 2 1
37 37 H 1.08000 * 119.95034 * 0.02562 * 11 10 9
38 38 H 1.07991 * 119.97457 * 180.02562 * 12 11 10
39 39 H 1.08006 * 120.02763 * 180.24929 * 13 12 11
40 40 H 1.09002 * 109.47259 * 300.00149 * 16 15 14
41 41 H 1.09001 * 109.47074 * 60.00171 * 16 15 14
42 42 H 1.09002 * 109.47153 * 300.00307 * 17 16 15
43 43 H 1.08998 * 109.47533 * 59.99936 * 17 16 15
44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18
45 45 H 1.07998 * 120.02418 * 0.02613 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0471 -1.2985
5 6 0.5163 2.7527 -1.5349
6 6 0.5920 3.2060 -2.8718
7 6 1.7505 2.7435 -3.3751
8 8 2.3792 2.0422 -2.4176
9 6 1.9954 -0.7660 1.1375
10 6 1.6369 -2.2204 0.9728
11 6 0.4504 -2.7028 1.4939
12 6 0.1184 -4.0365 1.3440
13 6 0.9697 -4.8897 0.6686
14 6 2.1629 -4.4094 0.1494
15 8 3.0042 -5.2478 -0.5111
16 6 2.5992 -6.6131 -0.6288
17 6 3.6648 -7.3967 -1.3978
18 6 3.2374 -8.8364 -1.5225
19 1 2.2993 -9.1601 -1.0963
20 6 4.0435 -9.7403 -2.1815
21 7 5.1856 -9.3460 -2.7009
22 14 3.5141 -11.5251 -2.3355
23 1 2.7227 -11.7010 -3.5797
24 1 4.7162 -12.3954 -2.3862
25 1 2.6822 -11.8975 -1.1631
26 6 2.4936 -3.0705 0.3009
27 1 -0.3634 0.4512 0.9233
28 1 -0.3633 0.5740 -0.8525
29 1 -0.3633 -1.0253 -0.0710
30 1 1.5610 1.9273 0.8309
31 1 3.0796 1.3445 0.1083
32 1 -0.2862 2.9392 -0.8365
33 1 -0.1413 3.8056 -3.3907
34 1 2.1135 2.9077 -4.3789
35 1 1.5611 -0.3873 2.0628
36 1 3.0797 -0.6611 1.1756
37 1 -0.2186 -2.0364 2.0182
38 1 -0.8091 -4.4107 1.7515
39 1 0.7080 -5.9306 0.5482
40 1 2.4781 -7.0432 0.3654
41 1 1.6519 -6.6661 -1.1655
42 1 3.7854 -6.9665 -2.3920
43 1 4.6123 -7.3438 -0.8617
44 1 5.7525 -9.9818 -3.1650
45 1 3.4202 -2.6932 -0.1059
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000162150778.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:02:35
Heat of formation + Delta-G solvation = -16.003419 kcal
Electronic energy + Delta-G solvation = -24749.312176 eV
Core-core repulsion = 21119.009974 eV
Total energy + Delta-G solvation = -3630.302202 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-43.44431 -41.12199 -39.32066 -37.70761 -35.47695 -33.94378 -32.92790 -32.58679
-31.15423 -30.39778 -28.40946 -27.30488 -26.79299 -24.14453 -23.29276 -23.00088
-22.60023 -21.41496 -21.24826 -19.12194 -18.28224 -18.02120 -17.33864 -17.03669
-16.93015 -16.85187 -16.48680 -16.27787 -16.08007 -15.69611 -15.03369 -14.53377
-14.37424 -14.33827 -14.26197 -13.83142 -13.72500 -13.66195 -13.46881 -13.13324
-13.04443 -12.75862 -12.66513 -12.61733 -12.50124 -12.34479 -12.24859 -11.82295
-11.58712 -11.56416 -11.38208 -10.79670 -10.63150 -9.85374 -9.48035 -9.23683
-9.05646 -8.27500 -6.41522 0.33139 0.54420 0.82914 1.40140 1.42770
1.53917 1.71795 2.17109 2.27335 2.51548 2.74283 3.06717 3.25191
3.78928 3.80530 3.93246 4.13905 4.16034 4.16942 4.22132 4.25515
4.28146 4.34380 4.39504 4.43570 4.55228 4.61030 4.63006 4.72169
4.75593 4.86378 4.95302 5.03185 5.10391 5.11524 5.24427 5.30500
5.45142 5.45347 5.53228 5.60014 5.64659 5.67868 5.89308 6.01011
6.02590 6.07224 6.28922 6.58406 6.73247 7.28610 8.85774
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.017474 B = 0.002210 C = 0.002047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1602.024624 B =12664.287744 C =13676.128714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.555 5.555
3 C 0.133 3.867
4 C -0.020 4.020
5 C -0.211 4.211
6 C -0.227 4.227
7 C -0.050 4.050
8 O -0.195 6.195
9 C 0.102 3.898
10 C -0.041 4.041
11 C -0.149 4.149
12 C -0.079 4.079
13 C -0.223 4.223
14 C 0.104 3.896
15 O -0.344 6.344
16 C 0.086 3.914
17 C 0.028 3.972
18 C -0.546 4.546
19 H 0.071 0.929
20 C 0.000 4.000
21 N -0.931 5.931
22 Si 0.978 3.022
23 H -0.270 1.270
24 H -0.281 1.281
25 H -0.259 1.259
26 C -0.153 4.153
27 H 0.050 0.950
28 H 0.065 0.935
29 H 0.065 0.935
30 H 0.092 0.908
31 H 0.095 0.905
32 H 0.162 0.838
33 H 0.166 0.834
34 H 0.227 0.773
35 H 0.075 0.925
36 H 0.090 0.910
37 H 0.151 0.849
38 H 0.151 0.849
39 H 0.125 0.875
40 H 0.060 0.940
41 H 0.058 0.942
42 H -0.004 1.004
43 H -0.002 1.002
44 H 0.267 0.733
45 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.047 26.376 8.371 30.594
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.280 5.280
3 C 0.007 3.993
4 C -0.070 4.070
5 C -0.231 4.231
6 C -0.246 4.246
7 C -0.118 4.118
8 O -0.091 6.091
9 C -0.024 4.024
10 C -0.042 4.042
11 C -0.168 4.168
12 C -0.096 4.096
13 C -0.242 4.242
14 C 0.059 3.941
15 O -0.259 6.259
16 C 0.012 3.988
17 C -0.009 4.009
18 C -0.584 4.584
19 H 0.089 0.911
20 C -0.198 4.198
21 N -0.571 5.571
22 Si 0.801 3.199
23 H -0.195 1.195
24 H -0.206 1.206
25 H -0.182 1.182
26 C -0.172 4.172
27 H 0.068 0.932
28 H 0.084 0.916
29 H 0.084 0.916
30 H 0.110 0.890
31 H 0.113 0.887
32 H 0.179 0.821
33 H 0.184 0.816
34 H 0.243 0.757
35 H 0.093 0.907
36 H 0.108 0.892
37 H 0.169 0.831
38 H 0.169 0.831
39 H 0.143 0.857
40 H 0.078 0.922
41 H 0.076 0.924
42 H 0.015 0.985
43 H 0.017 0.983
44 H 0.076 0.924
45 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -12.261 25.988 7.748 29.761
hybrid contribution -0.227 -0.782 -0.046 0.815
sum -12.488 25.206 7.702 29.165
Atomic orbital electron populations
1.22535 0.86287 1.02655 1.01438 1.61779 1.09396 1.12759 1.44091
1.20537 1.02010 0.87516 0.89261 1.22587 0.92854 1.02817 0.88754
1.21874 0.99402 1.03602 0.98182 1.22162 0.99966 1.06530 0.95951
1.24722 0.94607 0.97565 0.94860 1.84041 1.45888 1.58872 1.20329
1.21040 1.01237 0.88046 0.92110 1.19622 0.93798 0.95107 0.95635
1.21209 0.96974 0.95717 1.02870 1.21219 0.99031 0.93336 0.96053
1.21493 0.95712 1.01740 1.05255 1.19532 0.90340 0.91084 0.93159
1.86083 1.46597 1.21527 1.71659 1.22837 0.98815 0.77235 0.99955
1.18968 0.93641 0.94089 0.94236 1.21390 1.06445 0.93720 1.36806
0.91085 1.26076 0.94670 1.04560 0.94537 1.70130 1.12669 1.37084
1.37180 0.85261 0.77946 0.77524 0.79184 1.19526 1.20591 1.18241
1.20406 1.02373 0.90242 1.04207 0.93170 0.91642 0.91605 0.89004
0.88678 0.82072 0.81627 0.75656 0.90686 0.89196 0.83106 0.83102
0.85692 0.92160 0.92409 0.98526 0.98327 0.92420 0.86281
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 8.90 127.69 1.14 1.43 16
2 N -0.56 -10.29 4.74 -931.65 -4.42 -14.71 16
3 C 0.13 2.02 5.50 85.56 0.47 2.49 16
4 C -0.02 -0.38 6.24 24.83 0.15 -0.22 16
5 C -0.21 -3.47 9.28 22.19 0.21 -3.27 16
6 C -0.23 -3.59 10.91 22.19 0.24 -3.35 16
7 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16
8 O -0.20 -4.41 10.65 -2.52 -0.03 -4.44 16
9 C 0.10 1.74 5.12 85.56 0.44 2.18 16
10 C -0.04 -0.96 4.88 -19.88 -0.10 -1.06 16
11 C -0.15 -3.04 7.96 22.28 0.18 -2.87 16
12 C -0.08 -1.83 10.04 22.26 0.22 -1.61 16
13 C -0.22 -6.97 9.04 22.36 0.20 -6.76 16
14 C 0.10 3.82 6.69 22.50 0.15 3.97 16
15 O -0.34 -15.41 10.14 -92.43 -0.94 -16.35 16
16 C 0.09 3.92 4.68 71.98 0.34 4.25 16
17 C 0.03 1.57 5.34 29.85 0.16 1.73 16
18 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16
19 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16
20 C 0.00 0.00 5.46 84.65 0.46 0.46 16
21 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16
22 Si 0.98 44.02 29.54 68.60 2.03 46.05 16
23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16
25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16
26 C -0.15 -4.83 9.64 22.37 0.22 -4.62 16
27 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16
28 H 0.06 1.13 6.08 -2.39 -0.01 1.11 16
29 H 0.07 1.22 6.16 -2.38 -0.01 1.20 16
30 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16
31 H 0.09 1.38 7.93 -2.39 -0.02 1.36 16
32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16
33 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16
34 H 0.23 2.18 8.06 -2.91 -0.02 2.15 16
35 H 0.08 0.88 8.06 -2.38 -0.02 0.86 16
36 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16
37 H 0.15 2.03 8.03 -2.91 -0.02 2.00 16
38 H 0.15 2.55 8.06 -2.92 -0.02 2.53 16
39 H 0.13 3.90 6.30 -2.91 -0.02 3.88 16
40 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16
41 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16
42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16
43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16
44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
45 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16
Total: -1.00 -72.98 375.19 3.42 -69.56
By element:
Atomic # 1 Polarization: 14.68 SS G_CDS: 0.97 Total: 15.65 kcal
Atomic # 6 Polarization: -43.97 SS G_CDS: 5.52 Total: -38.45 kcal
Atomic # 7 Polarization: -67.90 SS G_CDS: -4.13 Total: -72.03 kcal
Atomic # 8 Polarization: -19.82 SS G_CDS: -0.96 Total: -20.79 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal
Total: -72.98 3.42 -69.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000162150778.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.561 kcal
(2) G-P(sol) polarization free energy of solvation -72.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.420 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.003 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds