Wall clock time and date at job start Tue Mar 31 2020 11:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 110.99824 * 2 1 4 4 C 1.50700 * 109.47044 * 293.95342 * 3 2 1 5 5 C 1.34514 * 125.78906 * 89.72021 * 4 3 2 6 6 C 1.41377 * 106.84285 * 179.88699 * 5 4 3 7 7 C 1.34513 * 106.84171 * 0.36791 * 6 5 4 8 8 O 1.34297 * 125.78989 * 270.02047 * 4 3 2 9 9 C 1.46896 * 111.00172 * 123.95760 * 2 1 3 10 10 C 1.50697 * 109.47382 * 66.04454 * 9 2 1 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 2 12 12 C 1.38255 * 120.11174 * 179.97438 * 11 10 9 13 13 C 1.38163 * 120.05063 * 359.76900 * 12 11 10 14 14 C 1.38710 * 119.94702 * 0.48231 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.76528 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 2 27 27 H 1.09001 * 109.47400 * 296.04422 * 1 2 3 28 28 H 1.09003 * 109.47007 * 56.04822 * 1 2 3 29 29 H 1.09005 * 109.47018 * 176.04044 * 1 2 3 30 30 H 1.08997 * 109.46881 * 53.95498 * 3 2 1 31 31 H 1.08998 * 109.47002 * 173.95308 * 3 2 1 32 32 H 1.08003 * 126.57734 * 0.02562 * 5 4 3 33 33 H 1.08002 * 126.58083 * 180.16563 * 6 5 4 34 34 H 1.07995 * 125.79841 * 179.75036 * 7 6 5 35 35 H 1.09005 * 109.46944 * 306.04467 * 9 2 1 36 36 H 1.09002 * 109.47398 * 186.04909 * 9 2 1 37 37 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 38 38 H 1.07991 * 119.97457 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.02763 * 180.24929 * 13 12 11 40 40 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 41 41 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 42 42 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 43 43 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 6 0.5163 2.7527 -1.5349 6 6 0.5920 3.2060 -2.8718 7 6 1.7505 2.7435 -3.3751 8 8 2.3792 2.0422 -2.4176 9 6 1.9954 -0.7660 1.1375 10 6 1.6369 -2.2204 0.9728 11 6 0.4504 -2.7028 1.4939 12 6 0.1184 -4.0365 1.3440 13 6 0.9697 -4.8897 0.6686 14 6 2.1629 -4.4094 0.1494 15 8 3.0042 -5.2478 -0.5111 16 6 2.5992 -6.6131 -0.6288 17 6 3.6648 -7.3967 -1.3978 18 6 3.2374 -8.8364 -1.5225 19 1 2.2993 -9.1601 -1.0963 20 6 4.0435 -9.7403 -2.1815 21 7 5.1856 -9.3460 -2.7009 22 14 3.5141 -11.5251 -2.3355 23 1 2.7227 -11.7010 -3.5797 24 1 4.7162 -12.3954 -2.3862 25 1 2.6822 -11.8975 -1.1631 26 6 2.4936 -3.0705 0.3009 27 1 -0.3634 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0253 -0.0710 30 1 1.5610 1.9273 0.8309 31 1 3.0796 1.3445 0.1083 32 1 -0.2862 2.9392 -0.8365 33 1 -0.1413 3.8056 -3.3907 34 1 2.1135 2.9077 -4.3789 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6611 1.1756 37 1 -0.2186 -2.0364 2.0182 38 1 -0.8091 -4.4107 1.7515 39 1 0.7080 -5.9306 0.5482 40 1 2.4781 -7.0432 0.3654 41 1 1.6519 -6.6661 -1.1655 42 1 3.7854 -6.9665 -2.3920 43 1 4.6123 -7.3438 -0.8617 44 1 5.7525 -9.9818 -3.1650 45 1 3.4202 -2.6932 -0.1059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162150778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:35 Heat of formation + Delta-G solvation = -16.003419 kcal Electronic energy + Delta-G solvation = -24749.312176 eV Core-core repulsion = 21119.009974 eV Total energy + Delta-G solvation = -3630.302202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.44431 -41.12199 -39.32066 -37.70761 -35.47695 -33.94378 -32.92790 -32.58679 -31.15423 -30.39778 -28.40946 -27.30488 -26.79299 -24.14453 -23.29276 -23.00088 -22.60023 -21.41496 -21.24826 -19.12194 -18.28224 -18.02120 -17.33864 -17.03669 -16.93015 -16.85187 -16.48680 -16.27787 -16.08007 -15.69611 -15.03369 -14.53377 -14.37424 -14.33827 -14.26197 -13.83142 -13.72500 -13.66195 -13.46881 -13.13324 -13.04443 -12.75862 -12.66513 -12.61733 -12.50124 -12.34479 -12.24859 -11.82295 -11.58712 -11.56416 -11.38208 -10.79670 -10.63150 -9.85374 -9.48035 -9.23683 -9.05646 -8.27500 -6.41522 0.33139 0.54420 0.82914 1.40140 1.42770 1.53917 1.71795 2.17109 2.27335 2.51548 2.74283 3.06717 3.25191 3.78928 3.80530 3.93246 4.13905 4.16034 4.16942 4.22132 4.25515 4.28146 4.34380 4.39504 4.43570 4.55228 4.61030 4.63006 4.72169 4.75593 4.86378 4.95302 5.03185 5.10391 5.11524 5.24427 5.30500 5.45142 5.45347 5.53228 5.60014 5.64659 5.67868 5.89308 6.01011 6.02590 6.07224 6.28922 6.58406 6.73247 7.28610 8.85774 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.002210 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.024624 B =12664.287744 C =13676.128714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.555 5.555 3 C 0.133 3.867 4 C -0.020 4.020 5 C -0.211 4.211 6 C -0.227 4.227 7 C -0.050 4.050 8 O -0.195 6.195 9 C 0.102 3.898 10 C -0.041 4.041 11 C -0.149 4.149 12 C -0.079 4.079 13 C -0.223 4.223 14 C 0.104 3.896 15 O -0.344 6.344 16 C 0.086 3.914 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.931 5.931 22 Si 0.978 3.022 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.153 4.153 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.227 0.773 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.058 0.942 42 H -0.004 1.004 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 26.376 8.371 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.280 5.280 3 C 0.007 3.993 4 C -0.070 4.070 5 C -0.231 4.231 6 C -0.246 4.246 7 C -0.118 4.118 8 O -0.091 6.091 9 C -0.024 4.024 10 C -0.042 4.042 11 C -0.168 4.168 12 C -0.096 4.096 13 C -0.242 4.242 14 C 0.059 3.941 15 O -0.259 6.259 16 C 0.012 3.988 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.182 1.182 26 C -0.172 4.172 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.015 0.985 43 H 0.017 0.983 44 H 0.076 0.924 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.261 25.988 7.748 29.761 hybrid contribution -0.227 -0.782 -0.046 0.815 sum -12.488 25.206 7.702 29.165 Atomic orbital electron populations 1.22535 0.86287 1.02655 1.01438 1.61779 1.09396 1.12759 1.44091 1.20537 1.02010 0.87516 0.89261 1.22587 0.92854 1.02817 0.88754 1.21874 0.99402 1.03602 0.98182 1.22162 0.99966 1.06530 0.95951 1.24722 0.94607 0.97565 0.94860 1.84041 1.45888 1.58872 1.20329 1.21040 1.01237 0.88046 0.92110 1.19622 0.93798 0.95107 0.95635 1.21209 0.96974 0.95717 1.02870 1.21219 0.99031 0.93336 0.96053 1.21493 0.95712 1.01740 1.05255 1.19532 0.90340 0.91084 0.93159 1.86083 1.46597 1.21527 1.71659 1.22837 0.98815 0.77235 0.99955 1.18968 0.93641 0.94089 0.94236 1.21390 1.06445 0.93720 1.36806 0.91085 1.26076 0.94670 1.04560 0.94537 1.70130 1.12669 1.37084 1.37180 0.85261 0.77946 0.77524 0.79184 1.19526 1.20591 1.18241 1.20406 1.02373 0.90242 1.04207 0.93170 0.91642 0.91605 0.89004 0.88678 0.82072 0.81627 0.75656 0.90686 0.89196 0.83106 0.83102 0.85692 0.92160 0.92409 0.98526 0.98327 0.92420 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.90 127.69 1.14 1.43 16 2 N -0.56 -10.29 4.74 -931.65 -4.42 -14.71 16 3 C 0.13 2.02 5.50 85.56 0.47 2.49 16 4 C -0.02 -0.38 6.24 24.83 0.15 -0.22 16 5 C -0.21 -3.47 9.28 22.19 0.21 -3.27 16 6 C -0.23 -3.59 10.91 22.19 0.24 -3.35 16 7 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16 8 O -0.20 -4.41 10.65 -2.52 -0.03 -4.44 16 9 C 0.10 1.74 5.12 85.56 0.44 2.18 16 10 C -0.04 -0.96 4.88 -19.88 -0.10 -1.06 16 11 C -0.15 -3.04 7.96 22.28 0.18 -2.87 16 12 C -0.08 -1.83 10.04 22.26 0.22 -1.61 16 13 C -0.22 -6.97 9.04 22.36 0.20 -6.76 16 14 C 0.10 3.82 6.69 22.50 0.15 3.97 16 15 O -0.34 -15.41 10.14 -92.43 -0.94 -16.35 16 16 C 0.09 3.92 4.68 71.98 0.34 4.25 16 17 C 0.03 1.57 5.34 29.85 0.16 1.73 16 18 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 19 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 0.00 5.46 84.65 0.46 0.46 16 21 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 22 Si 0.98 44.02 29.54 68.60 2.03 46.05 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 C -0.15 -4.83 9.64 22.37 0.22 -4.62 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 28 H 0.06 1.13 6.08 -2.39 -0.01 1.11 16 29 H 0.07 1.22 6.16 -2.38 -0.01 1.20 16 30 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.09 1.38 7.93 -2.39 -0.02 1.36 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.23 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.08 0.88 8.06 -2.38 -0.02 0.86 16 36 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 37 H 0.15 2.03 8.03 -2.91 -0.02 2.00 16 38 H 0.15 2.55 8.06 -2.92 -0.02 2.53 16 39 H 0.13 3.90 6.30 -2.91 -0.02 3.88 16 40 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 41 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -72.98 375.19 3.42 -69.56 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.97 Total: 15.65 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 5.52 Total: -38.45 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -4.13 Total: -72.03 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.96 Total: -20.79 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.98 3.42 -69.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162150778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.561 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds