Wall clock time and date at job start Tue Mar 31 2020 12:01:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 119.99713 * 2 1
4 4 H 1.48502 * 109.47274 * 180.02562 * 3 2 1
5 5 H 1.48504 * 109.47008 * 299.99751 * 3 2 1
6 6 H 1.48498 * 109.47328 * 59.99664 * 3 2 1
7 7 C 1.37868 * 120.00112 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00429 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00457 * 0.02562 * 7 2 1
10 10 C 1.52995 * 109.47448 * 179.97438 * 9 7 2
11 11 C 1.53005 * 109.46948 * 179.97438 * 10 9 7
12 12 N 1.46498 * 109.46908 * 180.02562 * 11 10 9
13 13 C 1.34782 * 120.00077 * 180.02562 * 12 11 10
14 14 O 1.21583 * 119.99856 * 359.97438 * 13 12 11
15 15 N 1.34769 * 119.99982 * 179.97438 * 13 12 11
16 16 C 1.46499 * 120.00040 * 179.97438 * 15 13 12
17 17 C 1.53000 * 109.47550 * 179.97438 * 16 15 13
18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 15
19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16
20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17
21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18
22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18
23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19
24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20
25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22
26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23
27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24
28 28 H 0.97001 * 120.00244 * 0.02562 * 1 2 3
29 29 H 1.08997 * 109.47105 * 59.99340 * 9 7 2
30 30 H 1.09008 * 109.46609 * 299.99947 * 9 7 2
31 31 H 1.09005 * 109.47229 * 60.00041 * 10 9 7
32 32 H 1.08994 * 109.47245 * 299.99743 * 10 9 7
33 33 H 1.08997 * 109.47169 * 59.99869 * 11 10 9
34 34 H 1.09002 * 109.47059 * 299.99719 * 11 10 9
35 35 H 0.96998 * 120.00387 * 359.97438 * 12 11 10
36 36 H 0.96998 * 120.00482 * 359.97438 * 15 13 12
37 37 H 1.08997 * 109.47513 * 59.99899 * 16 15 13
38 38 H 1.09008 * 109.47249 * 299.99938 * 16 15 13
39 39 H 1.09004 * 109.47397 * 60.00047 * 17 16 15
40 40 H 1.08998 * 109.47265 * 299.99951 * 17 16 15
41 41 H 1.07992 * 125.03293 * 359.97360 * 19 18 17
42 42 H 1.07996 * 120.11326 * 0.31780 * 23 22 20
43 43 H 1.08001 * 119.66142 * 179.97438 * 24 23 22
44 44 H 1.07992 * 119.73662 * 179.97438 * 25 24 23
45 45 H 1.08001 * 120.11150 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3964 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2454 -3.6620 0.0005
11 6 1.4804 -4.9871 0.0012
12 7 2.4325 -6.1005 0.0018
13 6 1.9833 -7.3713 0.0019
14 8 0.7879 -7.5935 0.0020
15 7 2.8591 -8.3956 0.0020
16 6 2.3709 -9.7768 0.0026
17 6 3.5609 -10.7385 0.0019
18 6 3.0586 -12.1593 0.0032
19 6 2.8822 -12.9429 1.0788
20 7 2.4132 -14.1685 0.6911
21 1 2.2096 -14.9026 1.2915
22 6 2.2723 -14.2040 -0.6781
23 6 1.8442 -15.1805 -1.5718
24 6 1.8147 -14.9068 -2.9216
25 6 2.2077 -13.6646 -3.4010
26 6 2.6305 -12.6908 -2.5409
27 6 2.6674 -12.9463 -1.1688
28 1 -0.4850 0.8400 -0.0004
29 1 0.6248 -2.5571 -0.8896
30 1 0.6242 -2.5567 0.8904
31 1 2.8721 -3.6042 0.8906
32 1 2.8720 -3.6043 -0.8894
33 1 0.8535 -5.0451 -0.8885
34 1 0.8541 -5.0446 0.8914
35 1 3.3861 -5.9233 0.0014
36 1 3.8127 -8.2183 0.0015
37 1 1.7650 -9.9485 -0.8870
38 1 1.7656 -9.9478 0.8930
39 1 4.1672 -10.5670 0.8914
40 1 4.1657 -10.5674 -0.8886
41 1 3.0818 -12.6498 2.0988
42 1 1.5317 -16.1482 -1.2083
43 1 1.4825 -15.6664 -3.6138
44 1 2.1789 -13.4664 -4.4622
45 1 2.9351 -11.7270 -2.9212
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000170887102.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:21
Heat of formation + Delta-G solvation = 4.287906 kcal
Electronic energy + Delta-G solvation = -23956.327409 eV
Core-core repulsion = 20359.197856 eV
Total energy + Delta-G solvation = -3597.129553 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.60368 -39.70100 -37.26479 -35.99994 -35.02464 -33.35129 -32.94781 -31.22356
-30.43854 -29.60167 -28.08254 -26.44121 -23.70745 -23.15806 -22.58826 -22.08994
-20.82379 -20.40345 -19.64387 -18.26413 -17.71716 -16.74686 -16.53013 -15.95836
-15.80305 -15.62177 -14.85855 -14.77353 -14.48862 -14.33068 -14.12985 -14.06358
-13.89291 -13.68136 -12.93435 -12.75365 -12.27983 -12.24173 -12.09426 -11.94019
-11.76177 -11.70376 -11.39536 -11.06325 -10.89556 -10.68555 -10.54217 -10.04828
-9.89836 -9.82304 -9.40848 -9.11177 -9.08130 -8.54440 -8.51587 -8.35008
-7.98313 -5.99435 -4.02387 0.81404 1.32772 2.27942 2.75249 2.96860
3.31542 3.38971 3.42539 3.46473 3.62014 4.36625 4.40606 4.45728
4.49532 4.70534 4.77622 4.87728 4.93276 4.98858 5.18168 5.31525
5.31842 5.36347 5.50476 5.56808 5.69595 5.74311 5.86689 5.91440
5.92947 6.18117 6.23665 6.31332 6.37694 6.44217 6.54405 6.59468
6.67276 6.84282 6.87109 7.07047 7.14742 7.16418 7.67250 7.80235
7.99886 8.23772 8.40887 8.84345 9.04641 9.61693 11.11876
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.033843 B = 0.001625 C = 0.001598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.159762 B =17224.453206 C =17521.287930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.056 3.944
3 Si 0.893 3.107
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.521 4.521
8 H 0.056 0.944
9 C 0.023 3.977
10 C -0.120 4.120
11 C 0.135 3.865
12 N -0.743 5.743
13 C 0.699 3.301
14 O -0.593 6.593
15 N -0.753 5.753
16 C 0.145 3.855
17 C -0.053 4.053
18 C -0.167 4.167
19 C 0.058 3.942
20 N -0.596 5.596
21 H 0.416 0.584
22 C 0.094 3.906
23 C -0.132 4.132
24 C -0.099 4.099
25 C -0.147 4.147
26 C -0.068 4.068
27 C -0.100 4.100
28 H 0.260 0.740
29 H 0.019 0.981
30 H 0.019 0.981
31 H 0.053 0.947
32 H 0.054 0.946
33 H 0.062 0.938
34 H 0.061 0.939
35 H 0.393 0.607
36 H 0.394 0.606
37 H 0.065 0.935
38 H 0.063 0.937
39 H 0.076 0.924
40 H 0.076 0.924
41 H 0.171 0.829
42 H 0.118 0.882
43 H 0.124 0.876
44 H 0.122 0.878
45 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.468 -33.266 -0.714 34.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.145 4.145
3 Si 0.721 3.279
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.559 4.559
8 H 0.074 0.926
9 C -0.015 4.015
10 C -0.158 4.158
11 C 0.012 3.988
12 N -0.397 5.397
13 C 0.399 3.601
14 O -0.472 6.472
15 N -0.410 5.410
16 C 0.021 3.979
17 C -0.092 4.092
18 C -0.174 4.174
19 C -0.068 4.068
20 N -0.198 5.198
21 H 0.252 0.748
22 C -0.013 4.013
23 C -0.153 4.153
24 C -0.118 4.118
25 C -0.166 4.166
26 C -0.086 4.086
27 C -0.104 4.104
28 H 0.070 0.930
29 H 0.038 0.962
30 H 0.038 0.962
31 H 0.072 0.928
32 H 0.072 0.928
33 H 0.080 0.920
34 H 0.080 0.920
35 H 0.226 0.774
36 H 0.227 0.773
37 H 0.083 0.917
38 H 0.082 0.918
39 H 0.094 0.906
40 H 0.095 0.905
41 H 0.188 0.812
42 H 0.136 0.864
43 H 0.142 0.858
44 H 0.140 0.860
45 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 8.149 -33.421 -0.602 34.405
hybrid contribution 1.162 0.721 0.344 1.410
sum 9.311 -32.699 -0.258 34.000
Atomic orbital electron populations
1.69981 1.06043 1.26533 1.50699 1.25033 0.94858 0.99299 0.95337
0.86528 0.80029 0.83793 0.77571 1.19782 1.21027 1.21029 1.21249
0.93028 0.90955 1.50718 0.92598 1.19041 0.93896 0.90842 0.97718
1.21885 0.99762 0.93358 1.00797 1.21496 0.91320 0.84176 1.01841
1.45383 1.10380 1.04485 1.79458 1.16024 0.85322 0.80776 0.78019
1.90921 1.14217 1.84152 1.57861 1.45138 1.08858 1.05452 1.81533
1.21128 0.95804 0.78490 1.02510 1.20060 0.96896 0.89111 1.03120
1.19967 1.10340 0.95962 0.91167 1.21658 1.01244 0.84705 0.99243
1.41726 1.58458 1.14100 1.05548 0.74759 1.18266 1.03089 0.96461
0.83453 1.20022 1.05031 0.97873 0.92393 1.20822 0.99663 0.97153
0.94200 1.20664 1.02498 0.93738 0.99721 1.20322 0.98130 0.99205
0.90988 1.19083 1.04610 0.93373 0.93375 0.93008 0.96220 0.96226
0.92797 0.92773 0.92003 0.92027 0.77366 0.77300 0.91692 0.91831
0.90558 0.90505 0.81182 0.86388 0.85823 0.85990 0.85986
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16
2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16
4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16
8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16
9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16
11 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16
12 N -0.74 -11.05 5.56 -65.23 -0.36 -11.41 16
13 C 0.70 11.07 8.57 -86.92 -0.74 10.33 16
14 O -0.59 -12.21 16.34 5.29 0.09 -12.12 16
15 N -0.75 -8.30 5.56 -65.23 -0.36 -8.66 16
16 C 0.15 1.51 5.66 -4.04 -0.02 1.49 16
17 C -0.05 -0.39 5.86 -27.88 -0.16 -0.55 16
18 C -0.17 -1.40 5.57 -102.71 -0.57 -1.98 16
19 C 0.06 0.39 11.73 -16.73 -0.20 0.19 16
20 N -0.60 -3.88 6.07 -10.65 -0.06 -3.94 16
21 H 0.42 1.44 8.96 -40.82 -0.37 1.08 16
22 C 0.09 0.83 7.28 -83.99 -0.61 0.22 16
23 C -0.13 -1.02 10.08 -39.43 -0.40 -1.42 16
24 C -0.10 -0.75 10.01 -39.54 -0.40 -1.14 16
25 C -0.15 -1.21 9.97 -39.94 -0.40 -1.60 16
26 C -0.07 -0.63 10.05 -39.65 -0.40 -1.03 16
27 C -0.10 -0.98 6.35 -105.14 -0.67 -1.64 16
28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
30 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16
31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.39 4.59 8.49 -40.82 -0.35 4.24 16
36 H 0.39 3.03 8.49 -40.82 -0.35 2.68 16
37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16
39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16
42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16
43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16
44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16
45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
LS Contribution 382.98 15.07 5.77 5.77
Total: -1.00 -36.16 382.98 -11.44 -47.60
By element:
Atomic # 1 Polarization: 9.63 SS G_CDS: -6.94 Total: 2.69 kcal
Atomic # 6 Polarization: -4.95 SS G_CDS: -5.28 Total: -10.23 kcal
Atomic # 7 Polarization: -50.23 SS G_CDS: -0.05 Total: -50.28 kcal
Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -36.16 -11.44 -47.60 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000170887102.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.888 kcal
(2) G-P(sol) polarization free energy of solvation -36.160 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.600 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds