Wall clock time and date at job start Tue Mar 31 2020 12:03:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86796 * 120.00212 * 2 1
4 4 H 1.48507 * 109.47118 * 240.00407 * 3 2 1
5 5 H 1.48498 * 109.47154 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.47292 * 120.00518 * 3 2 1
7 7 C 1.37881 * 120.00020 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99795 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99797 * 359.97438 * 7 2 1
10 10 C 1.53002 * 109.47121 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47018 * 180.02562 * 10 9 7
12 12 N 1.46505 * 109.46990 * 180.02562 * 11 10 9
13 13 C 1.34778 * 119.99957 * 180.02562 * 12 11 10
14 14 O 1.21274 * 119.99941 * 359.97438 * 13 12 11
15 15 C 1.50699 * 119.99872 * 179.97438 * 13 12 11
16 16 C 1.52998 * 109.47213 * 179.97438 * 15 13 12
17 17 C 1.53002 * 109.47326 * 179.97438 * 16 15 13
18 18 C 1.50697 * 109.47121 * 179.97438 * 17 16 15
19 19 N 1.30110 * 124.95422 * 304.97979 * 18 17 16
20 20 C 1.35787 * 109.64483 * 180.02562 * 19 18 17
21 21 C 1.39735 * 133.60090 * 179.97438 * 20 19 18
22 22 C 1.36603 * 119.88474 * 179.72469 * 21 20 19
23 23 C 1.38783 * 120.66827 * 0.28758 * 22 21 20
24 24 C 1.37847 * 120.45027 * 359.96769 * 23 22 21
25 25 C 1.38834 * 119.69200 * 0.03175 * 24 23 22
26 26 N 1.36051 * 124.94724 * 125.59800 * 18 17 16
27 27 H 0.97004 * 126.34652 * 359.39556 * 26 18 17
28 28 H 0.97003 * 120.00172 * 359.97438 * 1 2 3
29 29 H 1.09003 * 109.47190 * 60.00896 * 9 7 2
30 30 H 1.08999 * 109.47587 * 300.00434 * 9 7 2
31 31 H 1.08996 * 109.47094 * 60.00473 * 10 9 7
32 32 H 1.08999 * 109.47127 * 300.00571 * 10 9 7
33 33 H 1.08999 * 109.47651 * 60.00065 * 11 10 9
34 34 H 1.08999 * 109.47288 * 300.00044 * 11 10 9
35 35 H 0.96998 * 119.99977 * 359.97438 * 12 11 10
36 36 H 1.09008 * 109.47235 * 59.99631 * 15 13 12
37 37 H 1.08999 * 109.47133 * 300.00101 * 15 13 12
38 38 H 1.08996 * 109.46814 * 60.00038 * 16 15 13
39 39 H 1.08999 * 109.47319 * 300.00190 * 16 15 13
40 40 H 1.09003 * 109.46475 * 60.00111 * 17 16 15
41 41 H 1.08999 * 109.47127 * 300.00368 * 17 16 15
42 42 H 1.08002 * 120.06112 * 0.02562 * 21 20 19
43 43 H 1.07994 * 119.66831 * 180.30197 * 22 21 20
44 44 H 1.08003 * 119.77014 * 180.02562 * 23 22 21
45 45 H 1.08001 * 120.15211 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2842 2.7464 0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 -0.0012
12 7 2.4322 -6.1007 -0.0006
13 6 1.9829 -7.3713 -0.0015
14 8 0.7905 -7.5929 -0.0024
15 6 2.9621 -8.5168 -0.0014
16 6 2.1971 -9.8418 -0.0020
17 6 3.1914 -11.0047 -0.0026
18 6 2.4378 -12.3098 -0.0024
19 7 1.5360 -12.6498 0.8716
20 6 1.0594 -13.8869 0.5782
21 6 0.1036 -14.7168 1.1701
22 6 -0.1686 -15.9390 0.6240
23 6 0.4998 -16.3709 -0.5130
24 6 1.4503 -15.5713 -1.1107
25 6 1.7402 -14.3260 -0.5698
26 7 2.6099 -13.3092 -0.9094
27 1 3.2225 -13.3037 -1.6616
28 1 -0.4850 0.8401 0.0004
29 1 0.6241 -2.5567 -0.8904
30 1 0.6246 -2.5571 0.8896
31 1 2.8718 -3.6044 0.8895
32 1 2.8719 -3.6043 -0.8905
33 1 0.8538 -5.0446 -0.8914
34 1 0.8532 -5.0451 0.8885
35 1 3.3858 -5.9234 -0.0002
36 1 3.5883 -8.4595 0.8890
37 1 3.5894 -8.4586 -0.8910
38 1 1.5708 -9.8993 -0.8921
39 1 1.5702 -9.8997 0.8878
40 1 3.8180 -10.9473 0.8875
41 1 3.8180 -10.9466 -0.8925
42 1 -0.4226 -14.3905 2.0550
43 1 -0.9114 -16.5754 1.0815
44 1 0.2729 -17.3398 -0.9329
45 1 1.9672 -15.9121 -1.9957
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000171593830.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:03:09
Heat of formation + Delta-G solvation = -0.982893 kcal
Electronic energy + Delta-G solvation = -23677.721409 eV
Core-core repulsion = 20080.363297 eV
Total energy + Delta-G solvation = -3597.358112 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.46833 -39.54372 -37.80490 -35.59894 -34.77111 -33.46696 -33.30153 -31.36563
-30.43134 -30.18580 -28.01283 -26.47369 -23.75420 -22.79807 -22.49189 -22.12047
-20.81820 -20.69667 -19.78534 -18.21923 -17.56935 -16.86205 -16.40837 -16.11493
-15.80034 -15.55108 -15.27480 -14.82771 -14.63729 -14.46114 -14.26217 -13.89765
-13.74945 -13.42271 -12.63615 -12.52806 -12.28374 -12.21142 -11.97818 -11.87492
-11.78347 -11.66885 -11.62963 -11.08563 -10.93647 -10.88491 -10.72879 -10.62680
-10.24401 -9.86435 -9.85946 -9.35654 -9.12452 -8.75482 -8.72524 -8.45136
-8.37120 -6.01716 -4.05101 0.60723 1.17367 2.41866 2.49477 2.81672
3.31759 3.36513 3.37617 3.42125 3.55639 3.75914 4.18495 4.44001
4.54214 4.62333 4.67254 4.70200 4.83113 4.99011 5.04181 5.10633
5.16183 5.23908 5.27093 5.33859 5.40640 5.42354 5.70988 5.75584
5.78243 5.88130 6.03621 6.14140 6.16944 6.17586 6.20434 6.50926
6.53355 6.60160 6.84036 6.95116 7.00732 7.58091 7.63167 7.73506
7.76094 7.96782 8.37197 8.43798 9.01361 9.59022 11.09473
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.044309 B = 0.001489 C = 0.001461
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 631.779009 B =18797.143248 C =19160.831047
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.057 3.943
3 Si 0.894 3.106
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.524 4.524
8 H 0.055 0.945
9 C 0.023 3.977
10 C -0.120 4.120
11 C 0.115 3.885
12 N -0.728 5.728
13 C 0.505 3.495
14 O -0.543 6.543
15 C -0.141 4.141
16 C -0.096 4.096
17 C -0.042 4.042
18 C 0.292 3.708
19 N -0.485 5.485
20 C 0.049 3.951
21 C -0.064 4.064
22 C -0.129 4.129
23 C -0.104 4.104
24 C -0.113 4.113
25 C 0.043 3.957
26 N -0.600 5.600
27 H 0.422 0.578
28 H 0.262 0.738
29 H 0.019 0.981
30 H 0.019 0.981
31 H 0.054 0.946
32 H 0.053 0.947
33 H 0.063 0.937
34 H 0.064 0.936
35 H 0.398 0.602
36 H 0.095 0.905
37 H 0.092 0.908
38 H 0.072 0.928
39 H 0.087 0.913
40 H 0.099 0.901
41 H 0.084 0.916
42 H 0.130 0.870
43 H 0.129 0.871
44 H 0.129 0.871
45 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.675 -33.335 -2.291 34.521
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.144 4.144
3 Si 0.721 3.279
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.562 4.562
8 H 0.073 0.927
9 C -0.014 4.014
10 C -0.158 4.158
11 C -0.007 4.007
12 N -0.379 5.379
13 C 0.291 3.709
14 O -0.420 6.420
15 C -0.181 4.181
16 C -0.135 4.135
17 C -0.082 4.082
18 C 0.025 3.975
19 N -0.205 5.205
20 C -0.070 4.070
21 C -0.083 4.083
22 C -0.150 4.150
23 C -0.124 4.124
24 C -0.134 4.134
25 C -0.067 4.067
26 N -0.212 5.212
27 H 0.260 0.740
28 H 0.071 0.929
29 H 0.037 0.963
30 H 0.037 0.963
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.081 0.919
34 H 0.082 0.918
35 H 0.231 0.769
36 H 0.113 0.887
37 H 0.110 0.890
38 H 0.090 0.910
39 H 0.106 0.894
40 H 0.118 0.882
41 H 0.103 0.897
42 H 0.148 0.852
43 H 0.147 0.853
44 H 0.147 0.853
45 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 7.322 -32.892 -1.548 33.732
hybrid contribution 1.517 0.610 -1.140 1.993
sum 8.839 -32.282 -2.689 33.578
Atomic orbital electron populations
1.69955 1.06062 1.26804 1.50397 1.25029 0.94855 0.99288 0.95251
0.86639 0.79558 0.83101 0.78567 1.20263 1.21259 1.20247 1.21168
0.92945 0.90974 1.51150 0.92705 1.19031 0.93870 0.90865 0.97664
1.21882 0.99745 0.93411 1.00810 1.21635 0.91939 0.85205 1.01951
1.46243 1.10731 1.06054 1.74891 1.20600 0.89765 0.84150 0.76427
1.90721 1.17047 1.84818 1.49454 1.21665 0.98520 0.93474 1.04427
1.21240 0.96985 0.90018 1.05214 1.20267 0.96894 0.86738 1.04255
1.23627 0.95672 0.91710 0.86534 1.70435 1.12027 1.12292 1.25770
1.19139 0.99769 0.92746 0.95310 1.20083 0.95731 0.92757 0.99742
1.20666 1.01078 0.96227 0.97011 1.20891 0.95994 0.99423 0.96072
1.19954 1.00752 0.91523 1.01123 1.18905 0.96109 0.92325 0.99325
1.43110 1.35542 1.14714 1.27798 0.73956 0.92865 0.96294 0.96265
0.92732 0.92787 0.91870 0.91809 0.76854 0.88653 0.88969 0.90965
0.89405 0.88236 0.89735 0.85234 0.85318 0.85300 0.86043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16
4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16
6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16
8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16
9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16
10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16
11 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16
12 N -0.73 -9.97 5.56 -60.29 -0.33 -10.31 16
13 C 0.50 7.02 7.83 -10.99 -0.09 6.93 16
14 O -0.54 -10.14 15.98 5.56 0.09 -10.05 16
15 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16
16 C -0.10 -0.90 4.44 -26.73 -0.12 -1.02 16
17 C -0.04 -0.27 5.84 -27.88 -0.16 -0.44 16
18 C 0.29 2.76 7.37 -154.81 -1.14 1.62 16
19 N -0.49 -6.13 11.21 -8.23 -0.09 -6.22 16
20 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16
21 C -0.06 -0.62 10.05 -39.61 -0.40 -1.02 16
22 C -0.13 -0.97 9.96 -39.97 -0.40 -1.36 16
23 C -0.10 -0.70 10.03 -39.52 -0.40 -1.10 16
24 C -0.11 -0.84 10.07 -39.50 -0.40 -1.24 16
25 C 0.04 0.42 7.30 -83.99 -0.61 -0.20 16
26 N -0.60 -4.62 6.23 -8.00 -0.05 -4.67 16
27 H 0.42 1.70 8.96 -40.82 -0.37 1.34 16
28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
35 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16
36 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16
37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16
39 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16
40 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16
41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16
42 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16
43 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16
44 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16
45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16
LS Contribution 382.77 15.07 5.77 5.77
Total: -1.00 -36.59 382.77 -11.12 -47.71
By element:
Atomic # 1 Polarization: 7.11 SS G_CDS: -7.01 Total: 0.09 kcal
Atomic # 6 Polarization: -7.44 SS G_CDS: -5.20 Total: -12.63 kcal
Atomic # 7 Polarization: -47.56 SS G_CDS: 0.26 Total: -47.30 kcal
Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -36.59 -11.12 -47.71 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171593830.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.723 kcal
(2) G-P(sol) polarization free energy of solvation -36.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds