Wall clock time and date at job start Tue Mar 31 2020 12:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48507 * 109.47118 * 240.00407 * 3 2 1 5 5 H 1.48498 * 109.47154 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47292 * 120.00518 * 3 2 1 7 7 C 1.37881 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47018 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99957 * 180.02562 * 12 11 10 14 14 O 1.21274 * 119.99941 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99872 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47213 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47326 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47121 * 179.97438 * 17 16 15 19 19 N 1.30110 * 124.95422 * 304.97979 * 18 17 16 20 20 C 1.35787 * 109.64483 * 180.02562 * 19 18 17 21 21 C 1.39735 * 133.60090 * 179.97438 * 20 19 18 22 22 C 1.36603 * 119.88474 * 179.72469 * 21 20 19 23 23 C 1.38783 * 120.66827 * 0.28758 * 22 21 20 24 24 C 1.37847 * 120.45027 * 359.96769 * 23 22 21 25 25 C 1.38834 * 119.69200 * 0.03175 * 24 23 22 26 26 N 1.36051 * 124.94724 * 125.59800 * 18 17 16 27 27 H 0.97004 * 126.34652 * 359.39556 * 26 18 17 28 28 H 0.97003 * 120.00172 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47190 * 60.00896 * 9 7 2 30 30 H 1.08999 * 109.47587 * 300.00434 * 9 7 2 31 31 H 1.08996 * 109.47094 * 60.00473 * 10 9 7 32 32 H 1.08999 * 109.47127 * 300.00571 * 10 9 7 33 33 H 1.08999 * 109.47651 * 60.00065 * 11 10 9 34 34 H 1.08999 * 109.47288 * 300.00044 * 11 10 9 35 35 H 0.96998 * 119.99977 * 359.97438 * 12 11 10 36 36 H 1.09008 * 109.47235 * 59.99631 * 15 13 12 37 37 H 1.08999 * 109.47133 * 300.00101 * 15 13 12 38 38 H 1.08996 * 109.46814 * 60.00038 * 16 15 13 39 39 H 1.08999 * 109.47319 * 300.00190 * 16 15 13 40 40 H 1.09003 * 109.46475 * 60.00111 * 17 16 15 41 41 H 1.08999 * 109.47127 * 300.00368 * 17 16 15 42 42 H 1.08002 * 120.06112 * 0.02562 * 21 20 19 43 43 H 1.07994 * 119.66831 * 180.30197 * 22 21 20 44 44 H 1.08003 * 119.77014 * 180.02562 * 23 22 21 45 45 H 1.08001 * 120.15211 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9829 -7.3713 -0.0015 14 8 0.7905 -7.5929 -0.0024 15 6 2.9621 -8.5168 -0.0014 16 6 2.1971 -9.8418 -0.0020 17 6 3.1914 -11.0047 -0.0026 18 6 2.4378 -12.3098 -0.0024 19 7 1.5360 -12.6498 0.8716 20 6 1.0594 -13.8869 0.5782 21 6 0.1036 -14.7168 1.1701 22 6 -0.1686 -15.9390 0.6240 23 6 0.4998 -16.3709 -0.5130 24 6 1.4503 -15.5713 -1.1107 25 6 1.7402 -14.3260 -0.5698 26 7 2.6099 -13.3092 -0.9094 27 1 3.2225 -13.3037 -1.6616 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 0.8538 -5.0446 -0.8914 34 1 0.8532 -5.0451 0.8885 35 1 3.3858 -5.9234 -0.0002 36 1 3.5883 -8.4595 0.8890 37 1 3.5894 -8.4586 -0.8910 38 1 1.5708 -9.8993 -0.8921 39 1 1.5702 -9.8997 0.8878 40 1 3.8180 -10.9473 0.8875 41 1 3.8180 -10.9466 -0.8925 42 1 -0.4226 -14.3905 2.0550 43 1 -0.9114 -16.5754 1.0815 44 1 0.2729 -17.3398 -0.9329 45 1 1.9672 -15.9121 -1.9957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171593830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:09 Heat of formation + Delta-G solvation = -0.982893 kcal Electronic energy + Delta-G solvation = -23677.721409 eV Core-core repulsion = 20080.363297 eV Total energy + Delta-G solvation = -3597.358112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.46833 -39.54372 -37.80490 -35.59894 -34.77111 -33.46696 -33.30153 -31.36563 -30.43134 -30.18580 -28.01283 -26.47369 -23.75420 -22.79807 -22.49189 -22.12047 -20.81820 -20.69667 -19.78534 -18.21923 -17.56935 -16.86205 -16.40837 -16.11493 -15.80034 -15.55108 -15.27480 -14.82771 -14.63729 -14.46114 -14.26217 -13.89765 -13.74945 -13.42271 -12.63615 -12.52806 -12.28374 -12.21142 -11.97818 -11.87492 -11.78347 -11.66885 -11.62963 -11.08563 -10.93647 -10.88491 -10.72879 -10.62680 -10.24401 -9.86435 -9.85946 -9.35654 -9.12452 -8.75482 -8.72524 -8.45136 -8.37120 -6.01716 -4.05101 0.60723 1.17367 2.41866 2.49477 2.81672 3.31759 3.36513 3.37617 3.42125 3.55639 3.75914 4.18495 4.44001 4.54214 4.62333 4.67254 4.70200 4.83113 4.99011 5.04181 5.10633 5.16183 5.23908 5.27093 5.33859 5.40640 5.42354 5.70988 5.75584 5.78243 5.88130 6.03621 6.14140 6.16944 6.17586 6.20434 6.50926 6.53355 6.60160 6.84036 6.95116 7.00732 7.58091 7.63167 7.73506 7.76094 7.96782 8.37197 8.43798 9.01361 9.59022 11.09473 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.001489 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.779009 B =18797.143248 C =19160.831047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.728 5.728 13 C 0.505 3.495 14 O -0.543 6.543 15 C -0.141 4.141 16 C -0.096 4.096 17 C -0.042 4.042 18 C 0.292 3.708 19 N -0.485 5.485 20 C 0.049 3.951 21 C -0.064 4.064 22 C -0.129 4.129 23 C -0.104 4.104 24 C -0.113 4.113 25 C 0.043 3.957 26 N -0.600 5.600 27 H 0.422 0.578 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -33.335 -2.291 34.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.379 5.379 13 C 0.291 3.709 14 O -0.420 6.420 15 C -0.181 4.181 16 C -0.135 4.135 17 C -0.082 4.082 18 C 0.025 3.975 19 N -0.205 5.205 20 C -0.070 4.070 21 C -0.083 4.083 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.067 4.067 26 N -0.212 5.212 27 H 0.260 0.740 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.322 -32.892 -1.548 33.732 hybrid contribution 1.517 0.610 -1.140 1.993 sum 8.839 -32.282 -2.689 33.578 Atomic orbital electron populations 1.69955 1.06062 1.26804 1.50397 1.25029 0.94855 0.99288 0.95251 0.86639 0.79558 0.83101 0.78567 1.20263 1.21259 1.20247 1.21168 0.92945 0.90974 1.51150 0.92705 1.19031 0.93870 0.90865 0.97664 1.21882 0.99745 0.93411 1.00810 1.21635 0.91939 0.85205 1.01951 1.46243 1.10731 1.06054 1.74891 1.20600 0.89765 0.84150 0.76427 1.90721 1.17047 1.84818 1.49454 1.21665 0.98520 0.93474 1.04427 1.21240 0.96985 0.90018 1.05214 1.20267 0.96894 0.86738 1.04255 1.23627 0.95672 0.91710 0.86534 1.70435 1.12027 1.12292 1.25770 1.19139 0.99769 0.92746 0.95310 1.20083 0.95731 0.92757 0.99742 1.20666 1.01078 0.96227 0.97011 1.20891 0.95994 0.99423 0.96072 1.19954 1.00752 0.91523 1.01123 1.18905 0.96109 0.92325 0.99325 1.43110 1.35542 1.14714 1.27798 0.73956 0.92865 0.96294 0.96265 0.92732 0.92787 0.91870 0.91809 0.76854 0.88653 0.88969 0.90965 0.89405 0.88236 0.89735 0.85234 0.85318 0.85300 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 12 N -0.73 -9.97 5.56 -60.29 -0.33 -10.31 16 13 C 0.50 7.02 7.83 -10.99 -0.09 6.93 16 14 O -0.54 -10.14 15.98 5.56 0.09 -10.05 16 15 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 16 C -0.10 -0.90 4.44 -26.73 -0.12 -1.02 16 17 C -0.04 -0.27 5.84 -27.88 -0.16 -0.44 16 18 C 0.29 2.76 7.37 -154.81 -1.14 1.62 16 19 N -0.49 -6.13 11.21 -8.23 -0.09 -6.22 16 20 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16 21 C -0.06 -0.62 10.05 -39.61 -0.40 -1.02 16 22 C -0.13 -0.97 9.96 -39.97 -0.40 -1.36 16 23 C -0.10 -0.70 10.03 -39.52 -0.40 -1.10 16 24 C -0.11 -0.84 10.07 -39.50 -0.40 -1.24 16 25 C 0.04 0.42 7.30 -83.99 -0.61 -0.20 16 26 N -0.60 -4.62 6.23 -8.00 -0.05 -4.67 16 27 H 0.42 1.70 8.96 -40.82 -0.37 1.34 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 36 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -36.59 382.77 -11.12 -47.71 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.01 Total: 0.09 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -5.20 Total: -12.63 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.26 Total: -47.30 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.59 -11.12 -47.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.723 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds