Wall clock time and date at job start Tue Mar 31 2020 12:03:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86796 * 120.00212 * 2 1
4 4 H 1.48507 * 109.47118 * 240.00407 * 3 2 1
5 5 H 1.48498 * 109.47154 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.47292 * 120.00518 * 3 2 1
7 7 C 1.37881 * 120.00020 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99795 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99797 * 359.97438 * 7 2 1
10 10 C 1.53002 * 109.47121 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47018 * 180.02562 * 10 9 7
12 12 N 1.46505 * 109.46990 * 180.02562 * 11 10 9
13 13 C 1.34778 * 119.99957 * 180.02562 * 12 11 10
14 14 O 1.21274 * 119.99941 * 359.97438 * 13 12 11
15 15 C 1.50699 * 119.99872 * 179.97438 * 13 12 11
16 16 C 1.52998 * 109.47213 * 179.97438 * 15 13 12
17 17 C 1.53002 * 109.47326 * 179.97438 * 16 15 13
18 18 C 1.50697 * 109.47121 * 179.97438 * 17 16 15
19 19 N 1.30110 * 124.95422 * 304.97979 * 18 17 16
20 20 C 1.35787 * 109.64483 * 180.02562 * 19 18 17
21 21 C 1.39735 * 133.60090 * 179.97438 * 20 19 18
22 22 C 1.36603 * 119.88474 * 179.72469 * 21 20 19
23 23 C 1.38783 * 120.66827 * 0.28758 * 22 21 20
24 24 C 1.37847 * 120.45027 * 359.96769 * 23 22 21
25 25 C 1.38834 * 119.69200 * 0.03175 * 24 23 22
26 26 N 1.36051 * 124.94724 * 125.59800 * 18 17 16
27 27 H 0.97004 * 126.34652 * 359.39556 * 26 18 17
28 28 H 0.97003 * 120.00172 * 359.97438 * 1 2 3
29 29 H 1.09003 * 109.47190 * 60.00896 * 9 7 2
30 30 H 1.08999 * 109.47587 * 300.00434 * 9 7 2
31 31 H 1.08996 * 109.47094 * 60.00473 * 10 9 7
32 32 H 1.08999 * 109.47127 * 300.00571 * 10 9 7
33 33 H 1.08999 * 109.47651 * 60.00065 * 11 10 9
34 34 H 1.08999 * 109.47288 * 300.00044 * 11 10 9
35 35 H 0.96998 * 119.99977 * 359.97438 * 12 11 10
36 36 H 1.09008 * 109.47235 * 59.99631 * 15 13 12
37 37 H 1.08999 * 109.47133 * 300.00101 * 15 13 12
38 38 H 1.08996 * 109.46814 * 60.00038 * 16 15 13
39 39 H 1.08999 * 109.47319 * 300.00190 * 16 15 13
40 40 H 1.09003 * 109.46475 * 60.00111 * 17 16 15
41 41 H 1.08999 * 109.47127 * 300.00368 * 17 16 15
42 42 H 1.08002 * 120.06112 * 0.02562 * 21 20 19
43 43 H 1.07994 * 119.66831 * 180.30197 * 22 21 20
44 44 H 1.08003 * 119.77014 * 180.02562 * 23 22 21
45 45 H 1.08001 * 120.15211 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2842 2.7464 0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 -0.0012
12 7 2.4322 -6.1007 -0.0006
13 6 1.9829 -7.3713 -0.0015
14 8 0.7905 -7.5929 -0.0024
15 6 2.9621 -8.5168 -0.0014
16 6 2.1971 -9.8418 -0.0020
17 6 3.1914 -11.0047 -0.0026
18 6 2.4378 -12.3098 -0.0024
19 7 1.5360 -12.6498 0.8716
20 6 1.0594 -13.8869 0.5782
21 6 0.1036 -14.7168 1.1701
22 6 -0.1686 -15.9390 0.6240
23 6 0.4998 -16.3709 -0.5130
24 6 1.4503 -15.5713 -1.1107
25 6 1.7402 -14.3260 -0.5698
26 7 2.6099 -13.3092 -0.9094
27 1 3.2225 -13.3037 -1.6616
28 1 -0.4850 0.8401 0.0004
29 1 0.6241 -2.5567 -0.8904
30 1 0.6246 -2.5571 0.8896
31 1 2.8718 -3.6044 0.8895
32 1 2.8719 -3.6043 -0.8905
33 1 0.8538 -5.0446 -0.8914
34 1 0.8532 -5.0451 0.8885
35 1 3.3858 -5.9234 -0.0002
36 1 3.5883 -8.4595 0.8890
37 1 3.5894 -8.4586 -0.8910
38 1 1.5708 -9.8993 -0.8921
39 1 1.5702 -9.8997 0.8878
40 1 3.8180 -10.9473 0.8875
41 1 3.8180 -10.9466 -0.8925
42 1 -0.4226 -14.3905 2.0550
43 1 -0.9114 -16.5754 1.0815
44 1 0.2729 -17.3398 -0.9329
45 1 1.9672 -15.9121 -1.9957
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000171593830.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:03:08
Heat of formation + Delta-G solvation = -25.693866 kcal
Electronic energy + Delta-G solvation = -23678.792957 eV
Core-core repulsion = 20080.363297 eV
Total energy + Delta-G solvation = -3598.429660 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.10545 -40.71459 -38.39930 -37.03250 -35.60406 -35.16746 -34.13170 -33.06382
-31.18161 -30.86578 -29.06850 -27.91634 -25.20648 -23.76093 -23.24632 -22.87109
-22.29968 -21.46652 -21.01605 -18.85016 -18.54340 -18.16706 -17.84475 -17.03001
-16.85513 -16.48858 -16.34106 -16.17206 -15.98705 -15.27320 -14.97177 -14.89313
-14.79055 -14.28458 -14.17664 -13.77486 -13.60233 -13.29055 -13.06031 -12.76186
-12.68878 -12.56429 -12.53146 -12.45886 -12.38686 -12.35365 -11.78171 -11.66396
-11.61671 -11.58022 -11.25514 -10.94236 -10.78336 -10.54806 -10.05269 -9.33929
-9.10860 -8.19100 -6.31193 -0.00909 0.55029 1.42082 1.45355 1.53251
1.72280 1.76514 1.92877 2.31525 2.44236 2.90406 3.14508 3.17488
3.60902 3.80314 3.97876 4.07576 4.17118 4.18356 4.21477 4.24074
4.39591 4.44236 4.50601 4.55547 4.62977 4.64160 4.71740 4.80505
4.89735 4.94524 5.04340 5.12139 5.17427 5.20401 5.37094 5.45812
5.48356 5.55145 5.56833 5.58366 5.70309 5.83901 5.96968 6.21894
6.46655 6.66467 6.86469 6.92250 7.36117 7.38780 8.92781
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.044309 B = 0.001489 C = 0.001461
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 631.779009 B =18797.143248 C =19160.831047
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.004 4.004
3 Si 0.969 3.031
4 H -0.264 1.264
5 H -0.287 1.287
6 H -0.265 1.265
7 C -0.543 4.543
8 H 0.068 0.932
9 C 0.022 3.978
10 C -0.100 4.100
11 C 0.128 3.872
12 N -0.716 5.716
13 C 0.498 3.502
14 O -0.600 6.600
15 C -0.125 4.125
16 C -0.090 4.090
17 C -0.033 4.033
18 C 0.286 3.714
19 N -0.537 5.537
20 C 0.007 3.993
21 C -0.095 4.095
22 C -0.125 4.125
23 C -0.104 4.104
24 C -0.114 4.114
25 C 0.029 3.971
26 N -0.587 5.587
27 H 0.439 0.561
28 H 0.263 0.737
29 H -0.010 1.010
30 H -0.011 1.011
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.044 0.956
34 H 0.043 0.957
35 H 0.418 0.582
36 H 0.128 0.872
37 H 0.134 0.866
38 H 0.048 0.952
39 H 0.049 0.951
40 H 0.117 0.883
41 H 0.126 0.874
42 H 0.123 0.877
43 H 0.153 0.847
44 H 0.162 0.838
45 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.274 -34.566 -3.516 36.849
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.202 4.202
3 Si 0.793 3.207
4 H -0.189 1.189
5 H -0.213 1.213
6 H -0.190 1.190
7 C -0.581 4.581
8 H 0.087 0.913
9 C -0.016 4.016
10 C -0.138 4.138
11 C 0.003 3.997
12 N -0.368 5.368
13 C 0.286 3.714
14 O -0.481 6.481
15 C -0.164 4.164
16 C -0.130 4.130
17 C -0.072 4.072
18 C 0.019 3.981
19 N -0.258 5.258
20 C -0.110 4.110
21 C -0.114 4.114
22 C -0.145 4.145
23 C -0.123 4.123
24 C -0.135 4.135
25 C -0.081 4.081
26 N -0.200 5.200
27 H 0.281 0.719
28 H 0.071 0.929
29 H 0.009 0.991
30 H 0.008 0.992
31 H 0.088 0.912
32 H 0.089 0.911
33 H 0.063 0.937
34 H 0.061 0.939
35 H 0.256 0.744
36 H 0.146 0.854
37 H 0.152 0.848
38 H 0.067 0.933
39 H 0.068 0.932
40 H 0.135 0.865
41 H 0.144 0.856
42 H 0.141 0.859
43 H 0.171 0.829
44 H 0.180 0.820
45 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 10.996 -34.143 -2.794 35.979
hybrid contribution 0.311 0.915 -0.759 1.229
sum 11.306 -33.229 -3.553 35.279
Atomic orbital electron populations
1.70115 1.08029 1.27847 1.51600 1.26050 0.95737 1.03648 0.94719
0.85446 0.78159 0.77785 0.79315 1.18906 1.21253 1.18973 1.21666
0.93813 0.91960 1.50626 0.91345 1.18962 0.94532 0.93225 0.94902
1.21584 0.98342 0.91654 1.02238 1.21180 0.92208 0.86094 1.00191
1.46020 1.11126 1.05109 1.74589 1.21683 0.90013 0.85072 0.74583
1.90708 1.19972 1.85562 1.51848 1.21696 0.97191 0.89627 1.07895
1.21093 0.97339 0.92212 1.02309 1.20360 0.96012 0.83678 1.07113
1.24142 0.95090 0.92760 0.86125 1.70369 1.13995 1.13440 1.28018
1.19581 1.01237 0.93195 0.97022 1.20293 0.96571 0.94075 1.00479
1.21015 1.01050 0.95375 0.97043 1.21344 0.95069 1.00525 0.95388
1.20373 1.00745 0.90580 1.01779 1.19210 0.96412 0.93437 0.99077
1.43025 1.35316 1.13799 1.27898 0.71889 0.92853 0.99135 0.99212
0.91232 0.91132 0.93708 0.93870 0.74434 0.85375 0.84817 0.93300
0.93198 0.86478 0.85584 0.85860 0.82921 0.82019 0.83216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16
2 C 0.00 -0.23 5.46 84.66 0.46 0.24 16
3 Si 0.97 43.70 29.54 68.60 2.03 45.73 16
4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16
5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16
6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16
7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16
8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16
9 C 0.02 1.13 4.97 29.85 0.15 1.28 16
10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16
11 C 0.13 4.57 5.67 86.38 0.49 5.06 16
12 N -0.72 -18.57 5.56 -463.06 -2.57 -21.14 16
13 C 0.50 13.45 7.83 87.66 0.69 14.14 16
14 O -0.60 -23.32 15.98 -3.01 -0.05 -23.37 16
15 C -0.12 -1.73 5.70 29.85 0.17 -1.56 16
16 C -0.09 -1.64 4.44 30.59 0.14 -1.50 16
17 C -0.03 -0.35 5.84 29.85 0.17 -0.17 16
18 C 0.29 5.31 7.37 137.92 1.02 6.32 16
19 N -0.54 -14.38 11.21 -179.96 -2.02 -16.39 16
20 C 0.01 0.18 7.23 39.45 0.29 0.47 16
21 C -0.09 -1.99 10.05 22.25 0.22 -1.77 16
22 C -0.12 -1.79 9.96 22.02 0.22 -1.57 16
23 C -0.10 -1.20 10.03 22.31 0.22 -0.97 16
24 C -0.11 -1.50 10.07 22.32 0.22 -1.28 16
25 C 0.03 0.54 7.30 38.86 0.28 0.83 16
26 N -0.59 -8.35 6.23 -179.22 -1.12 -9.47 16
27 H 0.44 2.54 8.96 -92.71 -0.83 1.71 16
28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16
30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16
33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
35 H 0.42 7.42 8.47 -92.71 -0.79 6.64 16
36 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16
37 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16
38 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16
39 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16
40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
41 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16
42 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16
43 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16
44 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16
45 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16
Total: -1.00 -86.37 382.77 1.08 -85.29
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: -0.62 Total: 10.93 kcal
Atomic # 6 Polarization: -19.41 SS G_CDS: 5.14 Total: -14.27 kcal
Atomic # 7 Polarization: -98.89 SS G_CDS: -5.42 Total: -104.31 kcal
Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal
Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal
Total: -86.37 1.08 -85.29 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171593830.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal
(2) G-P(sol) polarization free energy of solvation -86.370 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds