Wall clock time and date at job start Tue Mar 31 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48507 * 109.47118 * 240.00407 * 3 2 1 5 5 H 1.48498 * 109.47154 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47292 * 120.00518 * 3 2 1 7 7 C 1.37881 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47018 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99957 * 180.02562 * 12 11 10 14 14 O 1.21274 * 119.99941 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99872 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47213 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47326 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47121 * 179.97438 * 17 16 15 19 19 N 1.30110 * 124.95422 * 304.97979 * 18 17 16 20 20 C 1.35787 * 109.64483 * 180.02562 * 19 18 17 21 21 C 1.39735 * 133.60090 * 179.97438 * 20 19 18 22 22 C 1.36603 * 119.88474 * 179.72469 * 21 20 19 23 23 C 1.38783 * 120.66827 * 0.28758 * 22 21 20 24 24 C 1.37847 * 120.45027 * 359.96769 * 23 22 21 25 25 C 1.38834 * 119.69200 * 0.03175 * 24 23 22 26 26 N 1.36051 * 124.94724 * 125.59800 * 18 17 16 27 27 H 0.97004 * 126.34652 * 359.39556 * 26 18 17 28 28 H 0.97003 * 120.00172 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47190 * 60.00896 * 9 7 2 30 30 H 1.08999 * 109.47587 * 300.00434 * 9 7 2 31 31 H 1.08996 * 109.47094 * 60.00473 * 10 9 7 32 32 H 1.08999 * 109.47127 * 300.00571 * 10 9 7 33 33 H 1.08999 * 109.47651 * 60.00065 * 11 10 9 34 34 H 1.08999 * 109.47288 * 300.00044 * 11 10 9 35 35 H 0.96998 * 119.99977 * 359.97438 * 12 11 10 36 36 H 1.09008 * 109.47235 * 59.99631 * 15 13 12 37 37 H 1.08999 * 109.47133 * 300.00101 * 15 13 12 38 38 H 1.08996 * 109.46814 * 60.00038 * 16 15 13 39 39 H 1.08999 * 109.47319 * 300.00190 * 16 15 13 40 40 H 1.09003 * 109.46475 * 60.00111 * 17 16 15 41 41 H 1.08999 * 109.47127 * 300.00368 * 17 16 15 42 42 H 1.08002 * 120.06112 * 0.02562 * 21 20 19 43 43 H 1.07994 * 119.66831 * 180.30197 * 22 21 20 44 44 H 1.08003 * 119.77014 * 180.02562 * 23 22 21 45 45 H 1.08001 * 120.15211 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9829 -7.3713 -0.0015 14 8 0.7905 -7.5929 -0.0024 15 6 2.9621 -8.5168 -0.0014 16 6 2.1971 -9.8418 -0.0020 17 6 3.1914 -11.0047 -0.0026 18 6 2.4378 -12.3098 -0.0024 19 7 1.5360 -12.6498 0.8716 20 6 1.0594 -13.8869 0.5782 21 6 0.1036 -14.7168 1.1701 22 6 -0.1686 -15.9390 0.6240 23 6 0.4998 -16.3709 -0.5130 24 6 1.4503 -15.5713 -1.1107 25 6 1.7402 -14.3260 -0.5698 26 7 2.6099 -13.3092 -0.9094 27 1 3.2225 -13.3037 -1.6616 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 0.8538 -5.0446 -0.8914 34 1 0.8532 -5.0451 0.8885 35 1 3.3858 -5.9234 -0.0002 36 1 3.5883 -8.4595 0.8890 37 1 3.5894 -8.4586 -0.8910 38 1 1.5708 -9.8993 -0.8921 39 1 1.5702 -9.8997 0.8878 40 1 3.8180 -10.9473 0.8875 41 1 3.8180 -10.9466 -0.8925 42 1 -0.4226 -14.3905 2.0550 43 1 -0.9114 -16.5754 1.0815 44 1 0.2729 -17.3398 -0.9329 45 1 1.9672 -15.9121 -1.9957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171593830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:08 Heat of formation + Delta-G solvation = -25.693866 kcal Electronic energy + Delta-G solvation = -23678.792957 eV Core-core repulsion = 20080.363297 eV Total energy + Delta-G solvation = -3598.429660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.10545 -40.71459 -38.39930 -37.03250 -35.60406 -35.16746 -34.13170 -33.06382 -31.18161 -30.86578 -29.06850 -27.91634 -25.20648 -23.76093 -23.24632 -22.87109 -22.29968 -21.46652 -21.01605 -18.85016 -18.54340 -18.16706 -17.84475 -17.03001 -16.85513 -16.48858 -16.34106 -16.17206 -15.98705 -15.27320 -14.97177 -14.89313 -14.79055 -14.28458 -14.17664 -13.77486 -13.60233 -13.29055 -13.06031 -12.76186 -12.68878 -12.56429 -12.53146 -12.45886 -12.38686 -12.35365 -11.78171 -11.66396 -11.61671 -11.58022 -11.25514 -10.94236 -10.78336 -10.54806 -10.05269 -9.33929 -9.10860 -8.19100 -6.31193 -0.00909 0.55029 1.42082 1.45355 1.53251 1.72280 1.76514 1.92877 2.31525 2.44236 2.90406 3.14508 3.17488 3.60902 3.80314 3.97876 4.07576 4.17118 4.18356 4.21477 4.24074 4.39591 4.44236 4.50601 4.55547 4.62977 4.64160 4.71740 4.80505 4.89735 4.94524 5.04340 5.12139 5.17427 5.20401 5.37094 5.45812 5.48356 5.55145 5.56833 5.58366 5.70309 5.83901 5.96968 6.21894 6.46655 6.66467 6.86469 6.92250 7.36117 7.38780 8.92781 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.001489 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.779009 B =18797.143248 C =19160.831047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.716 5.716 13 C 0.498 3.502 14 O -0.600 6.600 15 C -0.125 4.125 16 C -0.090 4.090 17 C -0.033 4.033 18 C 0.286 3.714 19 N -0.537 5.537 20 C 0.007 3.993 21 C -0.095 4.095 22 C -0.125 4.125 23 C -0.104 4.104 24 C -0.114 4.114 25 C 0.029 3.971 26 N -0.587 5.587 27 H 0.439 0.561 28 H 0.263 0.737 29 H -0.010 1.010 30 H -0.011 1.011 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.418 0.582 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -34.566 -3.516 36.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.368 5.368 13 C 0.286 3.714 14 O -0.481 6.481 15 C -0.164 4.164 16 C -0.130 4.130 17 C -0.072 4.072 18 C 0.019 3.981 19 N -0.258 5.258 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.081 4.081 26 N -0.200 5.200 27 H 0.281 0.719 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.256 0.744 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.996 -34.143 -2.794 35.979 hybrid contribution 0.311 0.915 -0.759 1.229 sum 11.306 -33.229 -3.553 35.279 Atomic orbital electron populations 1.70115 1.08029 1.27847 1.51600 1.26050 0.95737 1.03648 0.94719 0.85446 0.78159 0.77785 0.79315 1.18906 1.21253 1.18973 1.21666 0.93813 0.91960 1.50626 0.91345 1.18962 0.94532 0.93225 0.94902 1.21584 0.98342 0.91654 1.02238 1.21180 0.92208 0.86094 1.00191 1.46020 1.11126 1.05109 1.74589 1.21683 0.90013 0.85072 0.74583 1.90708 1.19972 1.85562 1.51848 1.21696 0.97191 0.89627 1.07895 1.21093 0.97339 0.92212 1.02309 1.20360 0.96012 0.83678 1.07113 1.24142 0.95090 0.92760 0.86125 1.70369 1.13995 1.13440 1.28018 1.19581 1.01237 0.93195 0.97022 1.20293 0.96571 0.94075 1.00479 1.21015 1.01050 0.95375 0.97043 1.21344 0.95069 1.00525 0.95388 1.20373 1.00745 0.90580 1.01779 1.19210 0.96412 0.93437 0.99077 1.43025 1.35316 1.13799 1.27898 0.71889 0.92853 0.99135 0.99212 0.91232 0.91132 0.93708 0.93870 0.74434 0.85375 0.84817 0.93300 0.93198 0.86478 0.85584 0.85860 0.82921 0.82019 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.13 4.57 5.67 86.38 0.49 5.06 16 12 N -0.72 -18.57 5.56 -463.06 -2.57 -21.14 16 13 C 0.50 13.45 7.83 87.66 0.69 14.14 16 14 O -0.60 -23.32 15.98 -3.01 -0.05 -23.37 16 15 C -0.12 -1.73 5.70 29.85 0.17 -1.56 16 16 C -0.09 -1.64 4.44 30.59 0.14 -1.50 16 17 C -0.03 -0.35 5.84 29.85 0.17 -0.17 16 18 C 0.29 5.31 7.37 137.92 1.02 6.32 16 19 N -0.54 -14.38 11.21 -179.96 -2.02 -16.39 16 20 C 0.01 0.18 7.23 39.45 0.29 0.47 16 21 C -0.09 -1.99 10.05 22.25 0.22 -1.77 16 22 C -0.12 -1.79 9.96 22.02 0.22 -1.57 16 23 C -0.10 -1.20 10.03 22.31 0.22 -0.97 16 24 C -0.11 -1.50 10.07 22.32 0.22 -1.28 16 25 C 0.03 0.54 7.30 38.86 0.28 0.83 16 26 N -0.59 -8.35 6.23 -179.22 -1.12 -9.47 16 27 H 0.44 2.54 8.96 -92.71 -0.83 1.71 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.42 7.42 8.47 -92.71 -0.79 6.64 16 36 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 45 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -86.37 382.77 1.08 -85.29 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -0.62 Total: 10.93 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.14 Total: -14.27 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -5.42 Total: -104.31 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -86.37 1.08 -85.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal (2) G-P(sol) polarization free energy of solvation -86.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds