Wall clock time and date at job start Tue Mar 31 2020 11:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 119.99969 * 2 1 4 4 O 1.21723 * 120.00323 * 180.02562 * 3 2 1 5 5 C 1.46260 * 120.00205 * 0.02562 * 3 2 1 6 6 C 1.35019 * 119.99953 * 179.97438 * 5 3 2 7 7 C 1.46960 * 119.99966 * 179.97438 * 6 5 3 8 8 C 1.40026 * 120.10276 * 179.97438 * 7 6 5 9 9 C 1.37594 * 119.89669 * 179.97438 * 8 7 6 10 10 C 1.39178 * 120.10072 * 0.25350 * 9 8 7 11 11 O 1.35579 * 119.89547 * 179.74679 * 10 9 8 12 12 C 1.34785 * 117.00142 * 354.44508 * 11 10 9 13 13 H 1.08005 * 119.99845 * 5.06100 * 12 11 10 14 14 C 1.38717 * 119.99804 * 185.06117 * 12 11 10 15 15 N 1.31506 * 119.99455 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00326 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47350 * 89.99913 * 16 14 12 18 18 H 1.48497 * 109.47507 * 210.00388 * 16 14 12 19 19 H 1.48509 * 109.47209 * 330.00228 * 16 14 12 20 20 C 1.39173 * 120.20483 * 359.49531 * 10 9 8 21 21 C 1.37597 * 120.09959 * 0.50464 * 20 10 9 22 22 C 1.46502 * 120.00023 * 180.02562 * 2 1 3 23 23 C 1.54270 * 110.03246 * 57.90684 * 22 2 1 24 24 C 1.54960 * 104.16143 * 217.13707 * 23 22 2 25 25 C 1.54896 * 102.77657 * 37.88557 * 24 23 22 26 26 C 1.53878 * 110.03432 * 300.69029 * 22 2 1 27 27 H 1.08996 * 109.47462 * 90.00179 * 1 2 3 28 28 H 1.09002 * 109.46941 * 209.99926 * 1 2 3 29 29 H 1.09002 * 109.47020 * 329.99523 * 1 2 3 30 30 H 1.07994 * 119.99446 * 359.97438 * 5 3 2 31 31 H 1.08003 * 120.00342 * 359.97438 * 6 5 3 32 32 H 1.07997 * 120.04753 * 359.96267 * 8 7 6 33 33 H 1.08001 * 119.95149 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99729 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.95191 * 180.25600 * 20 10 9 36 36 H 1.08000 * 120.05078 * 179.77151 * 21 20 10 37 37 H 1.08993 * 110.01857 * 179.29507 * 22 2 1 38 38 H 1.09002 * 110.48525 * 335.77954 * 23 22 2 39 39 H 1.08998 * 110.48954 * 98.42361 * 23 22 2 40 40 H 1.08996 * 110.72418 * 279.57566 * 24 23 22 41 41 H 1.09004 * 110.92757 * 156.29075 * 24 23 22 42 42 H 1.08997 * 110.48539 * 203.40522 * 25 24 23 43 43 H 1.08995 * 110.59638 * 80.82020 * 25 24 23 44 44 H 1.08999 * 110.02878 * 238.57111 * 26 22 2 45 45 H 1.09004 * 110.02532 * 359.94917 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3561 1.1672 -0.0005 5 6 1.4076 2.4338 0.0006 6 6 2.0827 3.6031 0.0011 7 6 1.3480 4.8758 0.0011 8 6 2.0459 6.0897 0.0022 9 6 1.3537 7.2788 0.0016 10 6 -0.0380 7.2763 0.0053 11 8 -0.7159 8.4505 0.0100 12 6 0.0136 9.5778 0.1270 13 1 1.0924 9.5251 0.1294 14 6 -0.6211 10.8056 0.2444 15 7 0.0907 11.9055 0.3581 16 14 -2.4868 10.8968 0.2395 17 1 -2.9917 10.7824 1.6314 18 1 -2.9175 12.1953 -0.3381 19 1 -3.0347 9.7851 -0.5786 20 6 -0.7361 6.0723 -0.0010 21 6 -0.0523 4.8783 -0.0005 22 6 2.1975 -1.2687 -0.0006 23 6 1.7949 -2.1109 -1.2288 24 6 1.7818 -3.5680 -0.7017 25 6 1.2034 -3.4104 0.7266 26 6 1.8221 -2.0948 1.2422 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 0.3276 2.4337 0.0006 31 1 3.1627 3.6031 0.0015 32 1 3.1259 6.0925 0.0036 33 1 1.8912 8.2156 0.0029 34 1 -0.3531 12.7641 0.4398 35 1 -1.8161 6.0752 -0.0023 36 1 -0.5948 3.9444 -0.0016 37 1 3.2709 -1.0799 -0.0131 38 1 0.8037 -1.8236 -1.5800 39 1 2.5301 -1.9992 -2.0257 40 1 2.7926 -3.9744 -0.6664 41 1 1.1351 -4.1974 -1.3130 42 1 1.5073 -4.2471 1.3556 43 1 0.1167 -3.3339 0.6939 44 1 2.7135 -2.3073 1.8324 45 1 1.0955 -1.5512 1.8462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183322019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:31 Heat of formation + Delta-G solvation = -26.604880 kcal Electronic energy + Delta-G solvation = -24749.942130 eV Core-core repulsion = 21119.180214 eV Total energy + Delta-G solvation = -3630.761916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.24256 -39.34568 -37.99527 -37.00387 -34.67229 -33.23333 -32.46296 -30.53862 -29.15075 -29.06111 -28.00783 -26.64869 -25.58362 -23.30979 -22.28938 -21.03293 -20.98406 -19.61238 -18.69645 -17.99881 -17.57597 -17.30628 -16.49323 -15.79357 -15.27771 -15.04120 -14.87193 -14.51901 -14.08827 -13.98662 -13.85940 -13.82265 -13.41745 -13.00889 -12.85836 -12.78772 -12.43049 -12.39078 -12.16490 -11.95440 -11.83264 -11.65337 -11.47330 -11.43183 -11.19905 -11.02587 -10.97163 -10.89753 -10.75824 -10.27984 -9.72231 -9.64863 -9.55138 -8.94227 -8.72327 -8.47426 -7.24276 -6.60609 -4.24379 0.98727 2.02988 2.46778 2.94762 3.11462 3.15324 3.28512 3.50507 4.08478 4.24176 4.29504 4.42857 4.55019 4.62624 4.76410 4.90794 4.93784 5.07430 5.10653 5.17048 5.17738 5.21676 5.27525 5.33231 5.41631 5.44696 5.51022 5.54049 5.59245 5.62334 5.70047 5.89004 5.91730 5.93698 5.98322 6.02860 6.29202 6.31326 6.51707 6.59427 6.67342 6.92607 7.08610 7.15781 7.38615 7.41414 7.62536 7.83888 8.27411 8.72687 9.32900 10.45661 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.002036 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.661233 B =13746.119115 C =14264.031795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.556 3.444 4 O -0.558 6.558 5 C -0.279 4.279 6 C 0.035 3.965 7 C -0.189 4.189 8 C -0.037 4.037 9 C -0.230 4.230 10 C 0.173 3.827 11 O -0.202 6.202 12 C -0.392 4.392 13 H 0.111 0.889 14 C 0.066 3.934 15 N -0.867 5.867 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.258 1.258 20 C -0.199 4.199 21 C -0.045 4.045 22 C 0.136 3.864 23 C -0.134 4.134 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.137 4.137 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.283 0.717 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 -26.004 -0.543 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C 0.350 3.650 4 O -0.439 6.439 5 C -0.300 4.300 6 C 0.015 3.985 7 C -0.190 4.190 8 C -0.055 4.055 9 C -0.249 4.249 10 C 0.119 3.881 11 O -0.105 6.105 12 C -0.467 4.467 13 H 0.128 0.872 14 C -0.140 4.140 15 N -0.502 5.502 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.182 1.182 20 C -0.219 4.219 21 C -0.063 4.063 22 C 0.032 3.968 23 C -0.173 4.173 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.175 4.175 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.414 -25.647 -0.533 25.656 hybrid contribution -0.769 0.296 0.029 0.824 sum -1.183 -25.351 -0.503 25.384 Atomic orbital electron populations 1.21763 0.79825 1.03161 1.01789 1.47759 1.06727 1.05571 1.74528 1.18451 0.87118 0.84246 0.75209 1.90760 1.13939 1.87653 1.51508 1.22576 1.00073 0.91465 1.15884 1.22324 0.99414 0.90933 0.85801 1.18528 0.93072 0.92104 1.15272 1.21045 0.98852 0.91268 0.94360 1.21223 0.93917 0.99042 1.10679 1.19363 0.90725 0.86200 0.91836 1.83506 1.36759 1.12381 1.77883 1.20878 0.92862 0.81425 1.51500 0.87195 1.24541 1.00672 0.93580 0.95169 1.69617 1.36873 0.98297 1.45460 0.86153 0.83053 0.78199 0.79392 1.19641 1.20524 1.18209 1.20139 0.99594 0.89952 1.12171 1.20865 0.92969 0.96584 0.95929 1.21712 0.98218 0.82673 0.94190 1.22745 1.02248 0.94710 0.97583 1.22473 1.01254 0.96267 0.96144 1.22353 1.00144 0.97202 0.96420 1.22547 1.01416 0.95963 0.97594 0.92703 0.91223 0.90480 0.85620 0.85824 0.86520 0.84495 0.90660 0.86119 0.86343 0.88022 0.90940 0.91236 0.91300 0.91379 0.91570 0.91619 0.91141 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 8.78 59.85 0.53 1.13 16 2 N -0.61 -6.69 2.75 -174.35 -0.48 -7.17 16 3 C 0.56 7.93 7.60 -13.04 -0.10 7.83 16 4 O -0.56 -9.83 15.58 5.17 0.08 -9.74 16 5 C -0.28 -3.76 8.61 -37.50 -0.32 -4.08 16 6 C 0.04 0.52 9.45 -37.19 -0.35 0.17 16 7 C -0.19 -3.10 5.87 -105.03 -0.62 -3.72 16 8 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 9 C -0.23 -4.69 9.14 -39.47 -0.36 -5.05 16 10 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 11 O -0.20 -5.05 8.57 0.70 0.01 -5.04 16 12 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 13 H 0.11 3.00 5.41 -52.48 -0.28 2.72 16 14 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 15 N -0.87 -23.91 13.96 55.48 0.77 -23.14 16 16 Si 0.91 20.57 28.62 -169.99 -4.86 15.70 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.20 -3.68 9.97 -39.47 -0.39 -4.07 16 21 C -0.05 -0.72 9.40 -39.15 -0.37 -1.09 16 22 C 0.14 1.33 3.30 -66.81 -0.22 1.11 16 23 C -0.13 -1.06 6.43 -25.03 -0.16 -1.22 16 24 C -0.12 -0.76 6.91 -24.70 -0.17 -0.93 16 25 C -0.12 -0.75 6.83 -25.07 -0.17 -0.92 16 26 C -0.14 -1.07 5.98 -25.62 -0.15 -1.23 16 27 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 28 H 0.07 0.43 6.87 -51.93 -0.36 0.07 16 29 H 0.08 0.57 6.09 -51.93 -0.32 0.25 16 30 H 0.13 1.43 4.21 -52.49 -0.22 1.20 16 31 H 0.12 1.86 7.52 -52.48 -0.39 1.46 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 34 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 36 H 0.12 1.50 6.16 -52.49 -0.32 1.18 16 37 H 0.10 1.22 6.94 -51.93 -0.36 0.86 16 38 H 0.07 0.55 6.88 -51.93 -0.36 0.19 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.58 6.97 -51.93 -0.36 0.22 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -29.70 364.77 -8.48 -38.18 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.20 Total: 3.82 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.29 Total: -18.11 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 0.29 Total: -30.30 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.70 -8.48 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183322019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.573 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds