Wall clock time and date at job start Tue Mar 31 2020 11:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 119.99969 * 2 1 4 4 O 1.21723 * 120.00323 * 180.02562 * 3 2 1 5 5 C 1.46260 * 120.00205 * 0.02562 * 3 2 1 6 6 C 1.35019 * 119.99953 * 179.97438 * 5 3 2 7 7 C 1.46960 * 119.99966 * 179.97438 * 6 5 3 8 8 C 1.40026 * 120.10276 * 179.97438 * 7 6 5 9 9 C 1.37594 * 119.89669 * 179.97438 * 8 7 6 10 10 C 1.39178 * 120.10072 * 0.25350 * 9 8 7 11 11 O 1.35579 * 119.89547 * 179.74679 * 10 9 8 12 12 C 1.34785 * 117.00142 * 354.44508 * 11 10 9 13 13 H 1.08005 * 119.99845 * 5.06100 * 12 11 10 14 14 C 1.38717 * 119.99804 * 185.06117 * 12 11 10 15 15 N 1.31506 * 119.99455 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00326 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47350 * 89.99913 * 16 14 12 18 18 H 1.48497 * 109.47507 * 210.00388 * 16 14 12 19 19 H 1.48509 * 109.47209 * 330.00228 * 16 14 12 20 20 C 1.39173 * 120.20483 * 359.49531 * 10 9 8 21 21 C 1.37597 * 120.09959 * 0.50464 * 20 10 9 22 22 C 1.46502 * 120.00023 * 180.02562 * 2 1 3 23 23 C 1.54270 * 110.03246 * 57.90684 * 22 2 1 24 24 C 1.54960 * 104.16143 * 217.13707 * 23 22 2 25 25 C 1.54896 * 102.77657 * 37.88557 * 24 23 22 26 26 C 1.53878 * 110.03432 * 300.69029 * 22 2 1 27 27 H 1.08996 * 109.47462 * 90.00179 * 1 2 3 28 28 H 1.09002 * 109.46941 * 209.99926 * 1 2 3 29 29 H 1.09002 * 109.47020 * 329.99523 * 1 2 3 30 30 H 1.07994 * 119.99446 * 359.97438 * 5 3 2 31 31 H 1.08003 * 120.00342 * 359.97438 * 6 5 3 32 32 H 1.07997 * 120.04753 * 359.96267 * 8 7 6 33 33 H 1.08001 * 119.95149 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99729 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.95191 * 180.25600 * 20 10 9 36 36 H 1.08000 * 120.05078 * 179.77151 * 21 20 10 37 37 H 1.08993 * 110.01857 * 179.29507 * 22 2 1 38 38 H 1.09002 * 110.48525 * 335.77954 * 23 22 2 39 39 H 1.08998 * 110.48954 * 98.42361 * 23 22 2 40 40 H 1.08996 * 110.72418 * 279.57566 * 24 23 22 41 41 H 1.09004 * 110.92757 * 156.29075 * 24 23 22 42 42 H 1.08997 * 110.48539 * 203.40522 * 25 24 23 43 43 H 1.08995 * 110.59638 * 80.82020 * 25 24 23 44 44 H 1.08999 * 110.02878 * 238.57111 * 26 22 2 45 45 H 1.09004 * 110.02532 * 359.94917 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3561 1.1672 -0.0005 5 6 1.4076 2.4338 0.0006 6 6 2.0827 3.6031 0.0011 7 6 1.3480 4.8758 0.0011 8 6 2.0459 6.0897 0.0022 9 6 1.3537 7.2788 0.0016 10 6 -0.0380 7.2763 0.0053 11 8 -0.7159 8.4505 0.0100 12 6 0.0136 9.5778 0.1270 13 1 1.0924 9.5251 0.1294 14 6 -0.6211 10.8056 0.2444 15 7 0.0907 11.9055 0.3581 16 14 -2.4868 10.8968 0.2395 17 1 -2.9917 10.7824 1.6314 18 1 -2.9175 12.1953 -0.3381 19 1 -3.0347 9.7851 -0.5786 20 6 -0.7361 6.0723 -0.0010 21 6 -0.0523 4.8783 -0.0005 22 6 2.1975 -1.2687 -0.0006 23 6 1.7949 -2.1109 -1.2288 24 6 1.7818 -3.5680 -0.7017 25 6 1.2034 -3.4104 0.7266 26 6 1.8221 -2.0948 1.2422 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 0.3276 2.4337 0.0006 31 1 3.1627 3.6031 0.0015 32 1 3.1259 6.0925 0.0036 33 1 1.8912 8.2156 0.0029 34 1 -0.3531 12.7641 0.4398 35 1 -1.8161 6.0752 -0.0023 36 1 -0.5948 3.9444 -0.0016 37 1 3.2709 -1.0799 -0.0131 38 1 0.8037 -1.8236 -1.5800 39 1 2.5301 -1.9992 -2.0257 40 1 2.7926 -3.9744 -0.6664 41 1 1.1351 -4.1974 -1.3130 42 1 1.5073 -4.2471 1.3556 43 1 0.1167 -3.3339 0.6939 44 1 2.7135 -2.3073 1.8324 45 1 1.0955 -1.5512 1.8462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183322019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:30 Heat of formation + Delta-G solvation = -42.085819 kcal Electronic energy + Delta-G solvation = -24750.613434 eV Core-core repulsion = 21119.180214 eV Total energy + Delta-G solvation = -3631.433220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23987 -40.90034 -38.95594 -38.45396 -35.55135 -34.75629 -34.16795 -32.01669 -30.26547 -29.64952 -28.99258 -27.63569 -27.18737 -24.57774 -23.77886 -22.22385 -21.54660 -20.67908 -19.98170 -19.38443 -19.10081 -18.57325 -17.39448 -16.72995 -16.52581 -16.32274 -15.95702 -15.81578 -15.66269 -15.49883 -15.21953 -14.49754 -14.45432 -14.34521 -14.23243 -14.03133 -13.75500 -13.45253 -13.38366 -12.91922 -12.80677 -12.72645 -12.61968 -12.54436 -12.32194 -11.99817 -11.96052 -11.93797 -11.61860 -11.44254 -11.31255 -11.16380 -10.85584 -10.67584 -9.92595 -9.62019 -8.74551 -8.53750 -6.25637 -0.30268 0.54387 1.08681 1.32778 1.37546 1.52597 2.06574 2.26316 2.32173 2.79862 2.99626 3.14640 3.53441 3.70107 3.74936 3.90135 3.97785 4.03426 4.19829 4.26054 4.35721 4.44157 4.46698 4.53608 4.56878 4.58044 4.63280 4.71982 4.80352 4.82818 4.86271 5.01030 5.05836 5.10834 5.17974 5.19630 5.25499 5.27485 5.30676 5.36902 5.46533 5.55367 5.69692 5.72281 5.78715 5.82890 6.13694 6.42122 6.79270 7.19576 7.50180 8.57052 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.002036 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.661233 B =13746.119115 C =14264.031795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.543 3.457 4 O -0.600 6.600 5 C -0.241 4.241 6 C 0.011 3.989 7 C -0.160 4.160 8 C -0.046 4.046 9 C -0.243 4.243 10 C 0.137 3.863 11 O -0.232 6.232 12 C -0.404 4.404 13 H 0.083 0.917 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.972 3.028 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.192 4.192 21 C -0.039 4.039 22 C 0.128 3.872 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.133 4.133 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.286 0.714 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -30.691 -0.584 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.335 5.335 3 C 0.336 3.664 4 O -0.483 6.483 5 C -0.261 4.261 6 C -0.009 4.009 7 C -0.161 4.161 8 C -0.064 4.064 9 C -0.262 4.262 10 C 0.086 3.914 11 O -0.138 6.138 12 C -0.480 4.480 13 H 0.101 0.899 14 C -0.188 4.188 15 N -0.557 5.557 16 Si 0.794 3.206 17 H -0.189 1.189 18 H -0.193 1.193 19 H -0.183 1.183 20 C -0.211 4.211 21 C -0.056 4.056 22 C 0.024 3.976 23 C -0.169 4.169 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.171 4.171 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.176 0.824 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.184 0.816 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.871 -30.426 -0.577 30.567 hybrid contribution 0.213 1.100 0.029 1.120 sum -2.658 -29.327 -0.548 29.452 Atomic orbital electron populations 1.22086 0.77340 1.04804 1.03295 1.47891 1.08307 1.04934 1.72362 1.18695 0.86753 0.85490 0.75417 1.90757 1.15826 1.88315 1.53441 1.22886 1.01466 0.90509 1.11239 1.22185 0.99364 0.90663 0.88666 1.18800 0.93666 0.92142 1.11484 1.21278 1.00079 0.90775 0.94303 1.21218 0.94017 0.99354 1.11649 1.19942 0.91521 0.86625 0.93300 1.83462 1.36501 1.12451 1.81435 1.20753 0.92091 0.82846 1.52293 0.89907 1.25347 1.05232 0.93108 0.95119 1.69706 1.38570 0.98866 1.48516 0.85192 0.77516 0.78345 0.79542 1.18936 1.19318 1.18283 1.20496 1.00779 0.89234 1.10613 1.21332 0.92688 0.97509 0.94090 1.21834 0.96634 0.82725 0.96363 1.22710 1.02273 0.95528 0.96357 1.22471 1.01679 0.95160 0.96434 1.22340 1.00730 0.96243 0.96150 1.22507 1.01413 0.96686 0.96537 0.91184 0.89134 0.89479 0.82440 0.86323 0.84527 0.86896 0.90384 0.84129 0.81641 0.91099 0.90015 0.92245 0.91456 0.89861 0.90636 0.90318 0.91709 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 8.78 127.77 1.12 1.81 16 2 N -0.60 -11.19 2.75 -823.73 -2.27 -13.46 16 3 C 0.54 14.04 7.60 86.33 0.66 14.70 16 4 O -0.60 -20.59 15.58 -4.42 -0.07 -20.66 16 5 C -0.24 -5.45 8.61 23.62 0.20 -5.25 16 6 C 0.01 0.30 9.45 23.82 0.23 0.52 16 7 C -0.16 -4.81 5.87 -20.13 -0.12 -4.93 16 8 C -0.05 -1.60 9.78 22.55 0.22 -1.38 16 9 C -0.24 -10.37 9.14 22.34 0.20 -10.16 16 10 C 0.14 6.06 6.66 22.72 0.15 6.21 16 11 O -0.23 -12.05 8.57 -20.40 -0.17 -12.22 16 12 C -0.40 -23.06 9.94 67.93 0.68 -22.39 16 13 H 0.08 4.98 5.41 -2.91 -0.02 4.96 16 14 C 0.01 0.64 5.49 84.86 0.47 1.11 16 15 N -0.92 -53.53 13.96 21.62 0.30 -53.23 16 16 Si 0.97 43.68 28.62 68.60 1.96 45.64 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 20 C -0.19 -6.66 9.97 22.34 0.22 -6.43 16 21 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 22 C 0.13 2.23 3.30 45.72 0.15 2.39 16 23 C -0.13 -1.70 6.43 31.70 0.20 -1.50 16 24 C -0.12 -1.09 6.91 31.91 0.22 -0.87 16 25 C -0.12 -0.98 6.83 31.67 0.22 -0.77 16 26 C -0.13 -1.73 5.98 31.32 0.19 -1.54 16 27 H 0.07 0.58 7.88 -2.39 -0.02 0.56 16 28 H 0.09 0.62 6.87 -2.39 -0.02 0.60 16 29 H 0.09 0.75 6.09 -2.39 -0.01 0.74 16 30 H 0.16 2.52 4.21 -2.91 -0.01 2.50 16 31 H 0.12 3.38 7.52 -2.91 -0.02 3.36 16 32 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 33 H 0.11 5.31 5.62 -2.91 -0.02 5.29 16 34 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.17 3.04 6.16 -2.91 -0.02 3.02 16 37 H 0.07 1.69 6.94 -2.39 -0.02 1.67 16 38 H 0.08 0.92 6.88 -2.39 -0.02 0.91 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 0.93 6.97 -2.39 -0.02 0.92 16 Total: -1.00 -70.03 364.77 5.98 -64.05 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.00 Total: 19.22 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 5.22 Total: -29.34 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -1.97 Total: -66.69 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.24 Total: -32.88 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.96 Total: 45.64 kcal Total: -70.03 5.98 -64.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183322019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.967 kcal (2) G-P(sol) polarization free energy of solvation -70.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds