Wall clock time and date at job start Tue Mar 31 2020 10:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20759 * 120.00591 * 2 1 4 4 C 1.50703 * 119.99784 * 179.97438 * 2 1 3 5 5 H 1.08998 * 112.85041 * 311.69893 * 4 2 1 6 6 C 1.53784 * 113.68995 * 180.42404 * 4 2 1 7 7 C 1.53782 * 87.07960 * 270.87394 * 6 4 2 8 8 H 1.09002 * 113.69454 * 220.00522 * 7 6 4 9 9 C 1.50698 * 113.61288 * 89.11933 * 7 6 4 10 10 O 1.21285 * 120.00262 * 262.75055 * 9 7 6 11 11 N 1.34781 * 120.00417 * 82.74752 * 9 7 6 12 12 C 1.37142 * 119.99744 * 5.27110 * 11 9 7 13 13 H 1.08000 * 119.99583 * 339.54250 * 12 11 9 14 14 C 1.38882 * 120.00133 * 159.54735 * 12 11 9 15 15 N 1.31423 * 120.00163 * 346.87909 * 14 12 11 16 16 Si 1.86796 * 120.00266 * 166.87957 * 14 12 11 17 17 H 1.48503 * 109.46888 * 59.99876 * 16 14 12 18 18 H 1.48504 * 109.47572 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47433 * 300.00182 * 16 14 12 20 20 C 1.39783 * 120.00315 * 184.99516 * 11 9 7 21 21 C 1.38964 * 120.07790 * 110.92900 * 20 11 9 22 22 C 1.38086 * 119.92010 * 179.74194 * 21 20 11 23 23 C 1.38313 * 120.07864 * 0.54398 * 22 21 20 24 24 C 1.38308 * 120.15300 * 359.73561 * 23 22 21 25 25 C 1.38088 * 120.08012 * 359.97438 * 24 23 22 26 26 C 1.53781 * 87.08485 * 334.56962 * 7 6 4 27 27 C 1.53002 * 113.61512 * 139.97978 * 26 7 6 28 28 C 1.52997 * 113.60986 * 270.88078 * 26 7 6 29 29 H 1.09004 * 109.46929 * 240.00751 * 1 2 3 30 30 H 1.08994 * 109.46605 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46897 * 120.00239 * 1 2 3 32 32 H 1.08994 * 113.61144 * 156.32993 * 6 4 2 33 33 H 1.08991 * 113.61358 * 25.42470 * 6 4 2 34 34 H 0.96996 * 120.00470 * 185.01542 * 15 14 12 35 35 H 1.07995 * 120.04058 * 0.02562 * 21 20 11 36 36 H 1.07998 * 119.96189 * 180.29709 * 22 21 20 37 37 H 1.07993 * 119.91803 * 179.71504 * 23 22 21 38 38 H 1.08000 * 119.95966 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.03485 * 180.02562 * 25 24 23 40 40 H 1.08999 * 109.46693 * 49.62797 * 27 26 7 41 41 H 1.09001 * 109.46653 * 169.63108 * 27 26 7 42 42 H 1.08997 * 109.46921 * 289.63413 * 27 26 7 43 43 H 1.09003 * 109.47250 * 60.00275 * 28 26 7 44 44 H 1.09011 * 109.46825 * 179.97438 * 28 26 7 45 45 H 1.08995 * 109.47647 * 299.99899 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2605 -1.3052 0.0006 5 1 1.8934 -2.0054 0.7509 6 6 3.7890 -1.1362 0.0109 7 6 3.7184 -1.1165 -1.5251 8 1 4.5279 -1.6640 -2.0079 9 6 3.5178 0.2609 -2.1026 10 8 2.4055 0.6329 -2.4115 11 7 4.5744 1.0795 -2.2758 12 6 5.8436 0.6225 -2.0288 13 1 5.9931 -0.2424 -1.3996 14 6 6.9366 1.2720 -2.5877 15 7 6.7580 2.1518 -3.5475 16 14 8.6605 0.8953 -1.9752 17 1 8.9553 -0.5455 -2.1816 18 1 9.6438 1.7141 -2.7289 19 1 8.7533 1.2171 -0.5285 20 6 4.3770 2.3926 -2.7127 21 6 4.6129 3.4564 -1.8503 22 6 4.4220 4.7524 -2.2869 23 6 3.9858 4.9920 -3.5774 24 6 3.7445 3.9353 -4.4366 25 6 3.9390 2.6370 -4.0086 26 6 2.4174 -1.9264 -1.3974 27 6 1.3293 -1.4980 -2.3841 28 6 2.6377 -3.4402 -1.3742 29 1 -0.3633 -0.5137 0.8901 30 1 -0.3632 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 4.3208 -1.9987 0.4125 33 1 4.1211 -0.1932 0.4449 34 1 7.5242 2.5516 -3.9878 35 1 4.9495 3.2700 -0.8412 36 1 4.6097 5.5799 -1.6187 37 1 3.8329 6.0064 -3.9147 38 1 3.4043 4.1260 -5.4437 39 1 3.7507 1.8124 -4.6802 40 1 1.7491 -1.4489 -3.3889 41 1 0.5158 -2.2232 -2.3652 42 1 0.9483 -0.5168 -2.1012 43 1 3.2689 -3.7026 -0.5251 44 1 1.6764 -3.9459 -1.2819 45 1 3.1247 -3.7508 -2.2985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188405522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:50 Heat of formation + Delta-G solvation = -0.352084 kcal Electronic energy + Delta-G solvation = -28435.241956 eV Core-core repulsion = 24805.618447 eV Total energy + Delta-G solvation = -3629.623509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07460 -38.77366 -37.43125 -36.35071 -34.61501 -31.64730 -30.72685 -30.05389 -29.74343 -28.83469 -26.94198 -26.05942 -24.85852 -22.76281 -21.65555 -21.36804 -20.12798 -19.08750 -17.93258 -16.86129 -16.29866 -15.55949 -15.37460 -15.21597 -14.60799 -14.55015 -14.31239 -14.07557 -13.74071 -13.53697 -13.22963 -12.90962 -12.81737 -12.51054 -12.26463 -12.01279 -11.99897 -11.82086 -11.59126 -11.50332 -11.38737 -11.12013 -11.01563 -10.87621 -10.78218 -10.60600 -10.47411 -10.16625 -10.13571 -9.67536 -9.60553 -9.28454 -8.97586 -8.14416 -8.11295 -7.71663 -7.29596 -6.17760 -3.94617 2.58791 2.62991 2.64542 3.12421 3.21206 3.21605 3.85403 4.07261 4.43158 4.54828 4.81373 4.95672 4.98057 5.14910 5.30750 5.36112 5.48684 5.56787 5.68058 5.76936 5.81266 5.90000 5.91171 5.97931 6.01469 6.03477 6.12623 6.18350 6.25591 6.33047 6.36494 6.47328 6.51550 6.57137 6.63141 6.68744 6.82072 6.93492 7.11119 7.18211 7.41604 7.48397 7.58313 7.76159 7.92481 8.11857 8.20273 8.55385 9.09601 9.49250 9.93952 10.70024 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.006702 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.338923 B = 4176.883696 C = 5423.866086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.376 3.624 3 O -0.429 6.429 4 C -0.160 4.160 5 H 0.094 0.906 6 C -0.112 4.112 7 C -0.106 4.106 8 H 0.095 0.905 9 C 0.499 3.501 10 O -0.583 6.583 11 N -0.408 5.408 12 C -0.347 4.347 13 H 0.099 0.901 14 C 0.043 3.957 15 N -0.850 5.850 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.252 3.748 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.153 4.153 24 C -0.120 4.120 25 C -0.082 4.082 26 C -0.051 4.051 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.271 0.729 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -6.476 4.625 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.249 3.751 3 O -0.300 6.300 4 C -0.179 4.179 5 H 0.112 0.888 6 C -0.150 4.150 7 C -0.127 4.127 8 H 0.113 0.887 9 C 0.290 3.710 10 O -0.467 6.467 11 N -0.122 5.122 12 C -0.474 4.474 13 H 0.116 0.884 14 C -0.164 4.164 15 N -0.486 5.486 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.161 3.839 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.172 4.172 24 C -0.139 4.139 25 C -0.102 4.102 26 C -0.052 4.052 27 C -0.196 4.196 28 C -0.182 4.182 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.006 -5.545 4.380 9.951 hybrid contribution 1.336 -0.345 0.156 1.389 sum -5.670 -5.890 4.536 9.350 Atomic orbital electron populations 1.22376 0.95243 1.04288 1.03684 1.23616 0.91205 0.89306 0.70975 1.90446 1.71452 1.34450 1.33628 1.23085 0.97616 0.97610 0.99593 0.88818 1.22701 0.93762 1.02970 0.95556 1.22288 0.98107 0.95402 0.96905 0.88679 1.19407 0.84230 0.85516 0.81872 1.90483 1.23897 1.76160 1.56209 1.41159 1.06172 1.07022 1.57890 1.19508 0.80758 1.15319 1.31770 0.88367 1.25273 0.99913 0.96053 0.95184 1.69856 1.31472 1.26929 1.20300 0.86137 0.81901 0.78397 0.79097 1.19910 1.20881 1.19827 1.17034 0.91724 0.84075 0.91065 1.20877 1.01662 0.92176 0.98913 1.20633 1.01699 0.95726 0.95894 1.20666 1.04315 0.97527 0.94651 1.20642 1.02094 0.92775 0.98419 1.20746 0.99206 0.95721 0.94521 1.21552 0.96003 0.94331 0.93268 1.22189 0.96374 1.02067 0.98986 1.21605 1.01426 0.93100 1.02052 0.90299 0.90568 0.88849 0.89629 0.89952 0.91755 0.87675 0.87904 0.88040 0.87889 0.88027 0.92699 0.94986 0.88480 0.92463 0.92404 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.67 9.82 36.01 0.35 -2.32 16 2 C 0.38 6.54 4.15 -29.03 -0.12 6.42 16 3 O -0.43 -9.51 13.92 -16.44 -0.23 -9.74 16 4 C -0.16 -2.42 3.76 -90.95 -0.34 -2.76 16 5 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 6 C -0.11 -1.88 6.56 -25.92 -0.17 -2.05 16 7 C -0.11 -2.01 2.48 -90.96 -0.23 -2.24 16 8 H 0.10 1.82 7.50 -51.93 -0.39 1.43 16 9 C 0.50 11.73 5.14 -10.98 -0.06 11.67 16 10 O -0.58 -14.27 10.00 -16.88 -0.17 -14.44 16 11 N -0.41 -10.40 2.68 -58.98 -0.16 -10.56 16 12 C -0.35 -8.79 8.94 -14.94 -0.13 -8.93 16 13 H 0.10 2.34 6.37 -52.49 -0.33 2.00 16 14 C 0.04 1.09 5.17 -17.49 -0.09 1.00 16 15 N -0.85 -22.64 10.64 55.49 0.59 -22.05 16 16 Si 0.92 19.79 29.58 -169.99 -5.03 14.76 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 20 C 0.25 6.52 2.54 -83.70 -0.21 6.30 16 21 C -0.12 -2.88 9.48 -39.37 -0.37 -3.26 16 22 C -0.12 -2.64 10.04 -39.61 -0.40 -3.03 16 23 C -0.15 -3.18 10.04 -39.53 -0.40 -3.58 16 24 C -0.12 -2.64 10.04 -39.61 -0.40 -3.03 16 25 C -0.08 -2.05 8.69 -39.37 -0.34 -2.39 16 26 C -0.05 -0.78 1.33 -153.69 -0.20 -0.99 16 27 C -0.14 -2.29 6.74 37.16 0.25 -2.04 16 28 C -0.12 -1.49 9.05 37.16 0.34 -1.15 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 31 H 0.09 1.18 6.08 -51.93 -0.32 0.87 16 32 H 0.09 1.18 7.65 -51.93 -0.40 0.78 16 33 H 0.08 1.62 7.40 -51.93 -0.38 1.23 16 34 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 35 H 0.11 2.62 8.06 -52.49 -0.42 2.20 16 36 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 40 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 41 H 0.03 0.43 8.00 -51.93 -0.42 0.01 16 42 H 0.10 1.79 2.92 -51.93 -0.15 1.64 16 43 H 0.06 0.62 7.34 -51.93 -0.38 0.24 16 44 H 0.06 0.59 8.06 -51.92 -0.42 0.17 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -30.52 352.44 -8.74 -39.26 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.54 Total: 9.82 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.52 Total: -12.37 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.43 Total: -32.61 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.40 Total: -24.17 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.52 -8.74 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188405522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.910 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds