Wall clock time and date at job start Tue Mar 31 2020 10:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20759 * 120.00591 * 2 1 4 4 C 1.50703 * 119.99784 * 179.97438 * 2 1 3 5 5 H 1.08998 * 112.85041 * 311.69893 * 4 2 1 6 6 C 1.53784 * 113.68995 * 180.42404 * 4 2 1 7 7 C 1.53782 * 87.07960 * 270.87394 * 6 4 2 8 8 H 1.09002 * 113.69454 * 220.00522 * 7 6 4 9 9 C 1.50698 * 113.61288 * 89.11933 * 7 6 4 10 10 O 1.21285 * 120.00262 * 262.75055 * 9 7 6 11 11 N 1.34781 * 120.00417 * 82.74752 * 9 7 6 12 12 C 1.37142 * 119.99744 * 5.27110 * 11 9 7 13 13 H 1.08000 * 119.99583 * 339.54250 * 12 11 9 14 14 C 1.38882 * 120.00133 * 159.54735 * 12 11 9 15 15 N 1.31423 * 120.00163 * 346.87909 * 14 12 11 16 16 Si 1.86796 * 120.00266 * 166.87957 * 14 12 11 17 17 H 1.48503 * 109.46888 * 59.99876 * 16 14 12 18 18 H 1.48504 * 109.47572 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47433 * 300.00182 * 16 14 12 20 20 C 1.39783 * 120.00315 * 184.99516 * 11 9 7 21 21 C 1.38964 * 120.07790 * 110.92900 * 20 11 9 22 22 C 1.38086 * 119.92010 * 179.74194 * 21 20 11 23 23 C 1.38313 * 120.07864 * 0.54398 * 22 21 20 24 24 C 1.38308 * 120.15300 * 359.73561 * 23 22 21 25 25 C 1.38088 * 120.08012 * 359.97438 * 24 23 22 26 26 C 1.53781 * 87.08485 * 334.56962 * 7 6 4 27 27 C 1.53002 * 113.61512 * 139.97978 * 26 7 6 28 28 C 1.52997 * 113.60986 * 270.88078 * 26 7 6 29 29 H 1.09004 * 109.46929 * 240.00751 * 1 2 3 30 30 H 1.08994 * 109.46605 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46897 * 120.00239 * 1 2 3 32 32 H 1.08994 * 113.61144 * 156.32993 * 6 4 2 33 33 H 1.08991 * 113.61358 * 25.42470 * 6 4 2 34 34 H 0.96996 * 120.00470 * 185.01542 * 15 14 12 35 35 H 1.07995 * 120.04058 * 0.02562 * 21 20 11 36 36 H 1.07998 * 119.96189 * 180.29709 * 22 21 20 37 37 H 1.07993 * 119.91803 * 179.71504 * 23 22 21 38 38 H 1.08000 * 119.95966 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.03485 * 180.02562 * 25 24 23 40 40 H 1.08999 * 109.46693 * 49.62797 * 27 26 7 41 41 H 1.09001 * 109.46653 * 169.63108 * 27 26 7 42 42 H 1.08997 * 109.46921 * 289.63413 * 27 26 7 43 43 H 1.09003 * 109.47250 * 60.00275 * 28 26 7 44 44 H 1.09011 * 109.46825 * 179.97438 * 28 26 7 45 45 H 1.08995 * 109.47647 * 299.99899 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2605 -1.3052 0.0006 5 1 1.8934 -2.0054 0.7509 6 6 3.7890 -1.1362 0.0109 7 6 3.7184 -1.1165 -1.5251 8 1 4.5279 -1.6640 -2.0079 9 6 3.5178 0.2609 -2.1026 10 8 2.4055 0.6329 -2.4115 11 7 4.5744 1.0795 -2.2758 12 6 5.8436 0.6225 -2.0288 13 1 5.9931 -0.2424 -1.3996 14 6 6.9366 1.2720 -2.5877 15 7 6.7580 2.1518 -3.5475 16 14 8.6605 0.8953 -1.9752 17 1 8.9553 -0.5455 -2.1816 18 1 9.6438 1.7141 -2.7289 19 1 8.7533 1.2171 -0.5285 20 6 4.3770 2.3926 -2.7127 21 6 4.6129 3.4564 -1.8503 22 6 4.4220 4.7524 -2.2869 23 6 3.9858 4.9920 -3.5774 24 6 3.7445 3.9353 -4.4366 25 6 3.9390 2.6370 -4.0086 26 6 2.4174 -1.9264 -1.3974 27 6 1.3293 -1.4980 -2.3841 28 6 2.6377 -3.4402 -1.3742 29 1 -0.3633 -0.5137 0.8901 30 1 -0.3632 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 4.3208 -1.9987 0.4125 33 1 4.1211 -0.1932 0.4449 34 1 7.5242 2.5516 -3.9878 35 1 4.9495 3.2700 -0.8412 36 1 4.6097 5.5799 -1.6187 37 1 3.8329 6.0064 -3.9147 38 1 3.4043 4.1260 -5.4437 39 1 3.7507 1.8124 -4.6802 40 1 1.7491 -1.4489 -3.3889 41 1 0.5158 -2.2232 -2.3652 42 1 0.9483 -0.5168 -2.1012 43 1 3.2689 -3.7026 -0.5251 44 1 1.6764 -3.9459 -1.2819 45 1 3.1247 -3.7508 -2.2985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188405522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:49 Heat of formation + Delta-G solvation = -15.360765 kcal Electronic energy + Delta-G solvation = -28435.892781 eV Core-core repulsion = 24805.618447 eV Total energy + Delta-G solvation = -3630.274334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.51362 -40.50808 -38.98271 -37.97582 -36.46213 -33.54171 -32.05781 -31.55522 -31.24353 -30.55925 -28.10809 -27.46007 -26.74770 -24.22279 -23.27040 -23.14078 -21.58232 -20.81777 -19.59240 -18.41360 -17.82044 -17.24909 -17.07874 -16.56867 -16.40514 -16.02839 -15.94991 -15.77165 -15.21913 -14.92583 -14.72898 -14.52306 -14.20534 -14.08551 -13.88422 -13.38352 -13.27378 -13.16200 -13.11755 -13.06328 -12.86298 -12.74332 -12.62292 -12.36005 -12.23358 -12.12102 -11.94955 -11.92497 -11.81660 -11.16741 -10.98110 -10.93062 -10.33264 -9.99157 -9.86833 -9.54513 -9.15579 -8.07926 -5.91153 0.79136 0.84235 1.28114 1.39587 1.43850 1.51124 2.10038 2.28871 2.89935 3.10134 3.26141 3.33068 3.53653 3.62868 3.91724 4.08249 4.22121 4.26480 4.35694 4.38200 4.39241 4.53229 4.66117 4.69607 4.74202 4.75717 4.82172 4.85313 4.89477 4.93925 4.98070 5.12431 5.15840 5.20211 5.23059 5.29275 5.34750 5.35903 5.44853 5.57348 5.68202 5.77505 5.78762 5.93629 6.09796 6.28552 6.66122 6.91225 7.18354 7.64508 8.09728 8.78433 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.006702 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.338923 B = 4176.883696 C = 5423.866086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.366 3.634 3 O -0.491 6.491 4 C -0.152 4.152 5 H 0.143 0.857 6 C -0.107 4.107 7 C -0.124 4.124 8 H 0.088 0.912 9 C 0.491 3.509 10 O -0.600 6.600 11 N -0.429 5.429 12 C -0.359 4.359 13 H 0.106 0.894 14 C -0.002 4.002 15 N -0.879 5.879 16 Si 0.983 3.017 17 H -0.260 1.260 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.235 3.765 21 C -0.147 4.147 22 C -0.119 4.119 23 C -0.149 4.149 24 C -0.119 4.119 25 C -0.112 4.112 26 C -0.037 4.037 27 C -0.137 4.137 28 C -0.119 4.119 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 -8.147 5.714 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.244 3.756 3 O -0.367 6.367 4 C -0.171 4.171 5 H 0.161 0.839 6 C -0.145 4.145 7 C -0.145 4.145 8 H 0.106 0.894 9 C 0.283 3.717 10 O -0.485 6.485 11 N -0.145 5.145 12 C -0.485 4.485 13 H 0.123 0.877 14 C -0.206 4.206 15 N -0.516 5.516 16 Si 0.806 3.194 17 H -0.184 1.184 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.143 3.857 21 C -0.167 4.167 22 C -0.137 4.137 23 C -0.167 4.167 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.038 4.038 27 C -0.194 4.194 28 C -0.176 4.176 29 H 0.140 0.860 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.141 0.859 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.822 -7.255 5.475 11.992 hybrid contribution 1.469 0.217 -0.212 1.500 sum -6.353 -7.038 5.264 10.844 Atomic orbital electron populations 1.22377 0.92327 1.04231 1.06107 1.24516 0.93188 0.89372 0.68529 1.90446 1.72904 1.36622 1.36690 1.23110 0.96033 0.97280 1.00674 0.83949 1.22748 0.95855 1.02594 0.93314 1.22412 1.00578 0.93210 0.98333 0.89400 1.20273 0.83599 0.86938 0.80889 1.90460 1.24406 1.77103 1.56571 1.41468 1.06766 1.07504 1.58723 1.19827 0.81224 1.15695 1.31768 0.87660 1.26090 1.03341 0.96004 0.95175 1.70022 1.31886 1.28157 1.21492 0.85145 0.77244 0.78744 0.78217 1.18432 1.21164 1.19727 1.17303 0.92097 0.84699 0.91576 1.20962 1.03728 0.93705 0.98293 1.21045 1.00270 0.95328 0.97085 1.21117 1.02589 0.99262 0.93713 1.21044 1.00771 0.91837 1.00071 1.20768 1.01500 0.96617 0.94267 1.21617 0.93079 0.96310 0.92793 1.22098 0.97719 1.02034 0.97546 1.21623 1.03443 0.89760 1.02783 0.86048 0.92052 0.87782 0.85911 0.93723 0.92328 0.89518 0.84750 0.83576 0.84832 0.90275 0.95638 0.91191 0.90856 0.90605 0.89564 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.89 9.82 71.24 0.70 -4.19 16 2 C 0.37 12.65 4.15 29.10 0.12 12.77 16 3 O -0.49 -22.87 13.92 20.01 0.28 -22.59 16 4 C -0.15 -4.26 3.76 -11.01 -0.04 -4.30 16 5 H 0.14 2.63 8.10 -2.39 -0.02 2.61 16 6 C -0.11 -3.53 6.56 31.12 0.20 -3.33 16 7 C -0.12 -4.78 2.48 -11.01 -0.03 -4.81 16 8 H 0.09 3.43 7.50 -2.39 -0.02 3.42 16 9 C 0.49 24.31 5.14 87.66 0.45 24.76 16 10 O -0.60 -31.09 10.00 18.41 0.18 -30.90 16 11 N -0.43 -23.23 2.68 -458.90 -1.23 -24.46 16 12 C -0.36 -19.04 8.94 84.02 0.75 -18.29 16 13 H 0.11 5.21 6.37 -2.91 -0.02 5.19 16 14 C 0.00 -0.13 5.17 84.91 0.44 0.31 16 15 N -0.88 -48.74 10.64 21.65 0.23 -48.51 16 16 Si 0.98 41.52 29.58 68.60 2.03 43.55 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 C 0.23 12.81 2.54 38.22 0.10 12.91 16 21 C -0.15 -7.65 9.48 22.41 0.21 -7.43 16 22 C -0.12 -5.20 10.04 22.25 0.22 -4.97 16 23 C -0.15 -5.99 10.04 22.30 0.22 -5.76 16 24 C -0.12 -5.22 10.04 22.25 0.22 -4.99 16 25 C -0.11 -5.85 8.69 22.41 0.19 -5.65 16 26 C -0.04 -1.08 1.33 -51.65 -0.07 -1.15 16 27 C -0.14 -4.37 6.74 71.98 0.49 -3.88 16 28 C -0.12 -2.36 9.05 71.98 0.65 -1.71 16 29 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.72 8.12 -2.39 -0.02 1.70 16 31 H 0.10 2.43 6.08 -2.39 -0.01 2.41 16 32 H 0.12 3.05 7.65 -2.39 -0.02 3.03 16 33 H 0.04 1.81 7.40 -2.39 -0.02 1.79 16 34 H 0.27 14.27 8.32 -92.71 -0.77 13.49 16 35 H 0.09 4.67 8.06 -2.91 -0.02 4.64 16 36 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.08 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.02 0.93 7.91 -2.39 -0.02 0.91 16 41 H 0.07 1.66 8.00 -2.39 -0.02 1.64 16 42 H 0.07 2.71 2.92 -2.39 -0.01 2.70 16 43 H 0.08 1.25 7.34 -2.39 -0.02 1.23 16 44 H 0.09 1.27 8.06 -2.38 -0.02 1.25 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.74 352.44 7.32 -66.43 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.99 Total: 36.20 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 4.84 Total: -19.71 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.00 Total: -72.97 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: 0.46 Total: -53.50 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -73.74 7.32 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188405522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.064 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds