Wall clock time and date at job start Tue Mar 31 2020 11:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99578 * 2 1 4 4 H 1.48504 * 109.47172 * 271.30236 * 3 2 1 5 5 H 1.48494 * 109.47516 * 31.30725 * 3 2 1 6 6 H 1.48502 * 109.46940 * 151.30613 * 3 2 1 7 7 C 1.38809 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00242 * 346.23952 * 7 2 1 9 9 N 1.36937 * 119.99929 * 166.23277 * 7 2 1 10 10 C 1.46967 * 120.59365 * 327.67312 * 9 7 2 11 11 C 1.53376 * 108.63517 * 235.20716 * 10 9 7 12 12 N 1.46965 * 108.63356 * 310.57480 * 11 10 9 13 13 C 1.34773 * 120.59868 * 235.20574 * 12 11 10 14 14 O 1.21294 * 119.99557 * 5.23856 * 13 12 11 15 15 C 1.50693 * 120.00646 * 185.23818 * 13 12 11 16 16 H 1.09005 * 109.25390 * 25.89067 * 15 13 12 17 17 C 1.52721 * 109.26129 * 145.36765 * 15 13 12 18 18 C 1.53329 * 108.42916 * 171.52220 * 17 15 13 19 19 C 1.52773 * 108.34491 * 290.10360 * 18 17 15 20 20 C 1.50494 * 110.56262 * 50.80330 * 19 18 17 21 21 C 1.39187 * 117.97557 * 162.69823 * 20 19 18 22 22 C 1.38401 * 118.86737 * 179.79174 * 21 20 19 23 23 C 1.38238 * 118.84728 * 359.97438 * 22 21 20 24 24 N 1.31513 * 120.60878 * 0.08973 * 23 22 21 25 25 C 1.32701 * 122.39714 * 0.03372 * 24 23 22 26 26 C 1.46967 * 118.80969 * 55.47790 * 12 11 10 27 27 C 1.46967 * 120.59323 * 147.65598 * 9 7 2 28 28 H 0.96992 * 120.00264 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.61029 * 115.45991 * 10 9 7 30 30 H 1.08998 * 109.61211 * 354.94770 * 10 9 7 31 31 H 1.09001 * 109.60590 * 190.83389 * 11 10 9 32 32 H 1.08993 * 109.75008 * 70.40212 * 11 10 9 33 33 H 1.09002 * 109.67171 * 291.25521 * 17 15 13 34 34 H 1.08997 * 109.67204 * 51.74969 * 17 15 13 35 35 H 1.08990 * 109.68790 * 49.81519 * 18 17 15 36 36 H 1.08997 * 109.68757 * 170.35139 * 18 17 15 37 37 H 1.09003 * 109.25727 * 171.08013 * 19 18 17 38 38 H 1.09000 * 109.25826 * 290.52290 * 19 18 17 39 39 H 1.07998 * 120.56588 * 359.77931 * 21 20 19 40 40 H 1.08011 * 120.57505 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.69627 * 180.10619 * 23 22 21 42 42 H 1.09002 * 109.60777 * 64.26963 * 26 12 11 43 43 H 1.09002 * 109.60820 * 184.77742 * 26 12 11 44 44 H 1.09000 * 109.60712 * 244.53530 * 27 9 7 45 45 H 1.08996 * 109.61118 * 5.04666 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4700 2.0624 -1.3997 5 1 1.4617 2.6445 0.7275 6 1 3.5612 1.4324 0.6722 7 6 2.0103 -1.2021 0.0005 8 1 1.4937 -2.1239 0.2234 9 7 3.3502 -1.2192 -0.2817 10 6 3.9293 -0.2480 -1.2205 11 6 4.6719 -1.0143 -2.3222 12 7 5.5567 -2.0038 -1.6913 13 6 6.8754 -2.0207 -1.9690 14 8 7.3584 -1.1571 -2.6706 15 6 7.7497 -3.1122 -1.4080 16 1 7.1426 -3.9976 -1.2189 17 6 8.8393 -3.4559 -2.4215 18 6 9.8390 -4.4080 -1.7544 19 6 10.6180 -3.6250 -0.6990 20 6 9.6763 -2.8831 0.2108 21 6 10.1703 -2.4249 1.4287 22 6 9.3214 -1.7365 2.2777 23 6 8.0122 -1.5274 1.8863 24 7 7.5797 -1.9761 0.7282 25 6 8.3607 -2.6423 -0.1127 26 6 4.9766 -2.9784 -0.7568 27 6 4.2349 -2.2088 0.3492 28 1 -0.4850 0.8400 -0.0004 29 1 4.6275 0.4006 -0.6916 30 1 3.1340 0.3510 -1.6641 31 1 5.2654 -0.3184 -2.9153 32 1 3.9538 -1.5230 -2.9652 33 1 8.3931 -3.9415 -3.2894 34 1 9.3509 -2.5453 -2.7332 35 1 9.3028 -5.2301 -1.2803 36 1 10.5269 -4.8014 -2.5028 37 1 11.2181 -4.3170 -0.1081 38 1 11.2765 -2.9113 -1.1941 39 1 11.1985 -2.6037 1.7064 40 1 9.6757 -1.3690 3.2296 41 1 7.3383 -0.9904 2.5375 42 1 4.2778 -3.6241 -1.2886 43 1 5.7714 -3.5802 -0.3158 44 1 4.9550 -1.6998 0.9899 45 1 3.6414 -2.9045 0.9423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192598591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:08 Heat of formation + Delta-G solvation = 31.116330 kcal Electronic energy + Delta-G solvation = -27559.336451 eV Core-core repulsion = 23963.370266 eV Total energy + Delta-G solvation = -3595.966185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10431 -39.37084 -37.20147 -36.29904 -34.00906 -33.39080 -31.40509 -30.82116 -30.62394 -29.89063 -27.09845 -24.88448 -23.56782 -23.56153 -23.39488 -22.46281 -20.76147 -19.97506 -18.65821 -17.31807 -16.79044 -16.62665 -16.33832 -15.65627 -15.34696 -15.12497 -14.58751 -14.33239 -14.16726 -14.05460 -13.81674 -13.66127 -13.44304 -13.04505 -13.01311 -12.61284 -12.55122 -12.24462 -12.21173 -12.00589 -11.80628 -11.36567 -11.15583 -10.94863 -10.77833 -10.73167 -10.28962 -10.14966 -9.97085 -9.82346 -9.57987 -9.50513 -9.28019 -8.82709 -8.73237 -8.19429 -6.82319 -5.93349 -3.36254 0.97967 1.16666 2.91538 3.33110 3.36636 3.50306 3.54335 3.71732 4.06611 4.40416 4.52739 4.53754 4.62207 4.65679 4.80481 4.93231 4.97081 5.02082 5.09843 5.18369 5.28574 5.35934 5.45965 5.53672 5.58344 5.63659 5.68643 5.73241 5.75979 5.85424 5.90849 5.98939 6.04596 6.10196 6.14544 6.15082 6.23744 6.33506 6.51758 6.57939 6.68082 6.89739 7.03922 7.87558 7.95492 8.01177 8.35489 8.53854 8.94439 9.72066 10.12447 11.22637 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.004368 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.661531 B = 6408.465105 C = 7017.696057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.115 3.885 11 C 0.096 3.904 12 N -0.586 5.586 13 C 0.532 3.468 14 O -0.557 6.557 15 C -0.057 4.057 16 H 0.108 0.892 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.077 4.077 20 C -0.122 4.122 21 C -0.080 4.080 22 C -0.174 4.174 23 C 0.108 3.892 24 N -0.469 5.469 25 C 0.144 3.856 26 C 0.096 3.904 27 C 0.140 3.860 28 H 0.263 0.737 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.347 -9.758 0.711 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.720 3.280 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.331 5.331 10 C -0.011 4.011 11 C -0.028 4.028 12 N -0.317 5.317 13 C 0.319 3.681 14 O -0.436 6.436 15 C -0.079 4.079 16 H 0.126 0.874 17 C -0.144 4.144 18 C -0.156 4.156 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.106 4.106 22 C -0.194 4.194 23 C -0.051 4.051 24 N -0.177 5.177 25 C 0.008 3.992 26 C -0.028 4.028 27 C 0.013 3.987 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.523 -9.058 0.134 23.352 hybrid contribution 1.123 0.932 0.503 1.544 sum 22.646 -8.126 0.636 24.069 Atomic orbital electron populations 1.69769 1.05693 1.26556 1.53606 1.25374 0.95254 0.97708 0.98981 0.86882 0.79774 0.84201 0.77191 1.21554 1.23229 1.19386 1.18917 0.81850 0.94110 1.43991 0.89752 1.44261 1.05253 1.36097 1.47471 1.21722 0.96306 0.92383 0.90678 1.22208 0.92495 0.91760 0.96336 1.47858 1.06716 1.33259 1.43845 1.19979 0.82203 0.85848 0.80095 1.90634 1.73378 1.39195 1.40402 1.20189 0.97053 0.98524 0.92146 0.87436 1.21488 0.95457 1.00729 0.96721 1.21575 0.98207 0.97922 0.97927 1.20434 0.96520 0.98404 0.96063 1.20384 0.94937 1.00736 0.96340 1.21526 0.99956 0.96042 0.93092 1.22133 0.95424 1.00717 1.01089 1.22731 0.94015 0.95802 0.92590 1.67637 1.38110 1.08452 1.03493 1.20468 0.89846 0.94797 0.94078 1.22404 0.97259 0.91151 0.91987 1.21346 0.92725 0.92028 0.92579 0.92742 0.95033 0.90368 0.90021 0.91367 0.90578 0.89909 0.91335 0.90665 0.90531 0.90266 0.85003 0.84828 0.82593 0.91913 0.90650 0.94013 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.07 13.97 55.49 0.78 -27.29 16 2 C 0.03 0.75 5.32 -17.43 -0.09 0.66 16 3 Si 0.89 22.97 24.31 -169.99 -4.13 18.84 16 4 H -0.29 -7.22 6.65 56.52 0.38 -6.85 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -6.93 6.37 56.52 0.36 -6.57 16 7 C -0.26 -7.24 10.04 -15.06 -0.15 -7.40 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -14.55 2.70 -171.77 -0.46 -15.01 16 10 C 0.12 2.65 4.31 -3.59 -0.02 2.63 16 11 C 0.10 1.91 6.60 -3.59 -0.02 1.89 16 12 N -0.59 -10.68 2.94 -172.21 -0.51 -11.19 16 13 C 0.53 9.34 6.11 -10.99 -0.07 9.27 16 14 O -0.56 -11.46 15.49 5.55 0.09 -11.37 16 15 C -0.06 -0.77 1.91 -93.06 -0.18 -0.94 16 16 H 0.11 1.27 6.15 -51.93 -0.32 0.95 16 17 C -0.11 -1.15 5.04 -26.70 -0.13 -1.28 16 18 C -0.12 -0.93 5.99 -26.68 -0.16 -1.09 16 19 C -0.08 -0.61 5.68 -28.10 -0.16 -0.77 16 20 C -0.12 -1.34 5.74 -104.60 -0.60 -1.94 16 21 C -0.08 -0.77 9.75 -39.17 -0.38 -1.15 16 22 C -0.17 -1.74 10.12 -39.52 -0.40 -2.14 16 23 C 0.11 1.38 11.19 -17.69 -0.20 1.18 16 24 N -0.47 -7.09 8.34 -9.51 -0.08 -7.17 16 25 C 0.14 1.96 6.11 -82.44 -0.50 1.46 16 26 C 0.10 1.61 5.97 -3.37 -0.02 1.59 16 27 C 0.14 2.77 6.69 -3.37 -0.02 2.75 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.03 0.76 6.92 -51.93 -0.36 0.40 16 30 H 0.08 1.91 4.52 -51.93 -0.23 1.68 16 31 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16 35 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.07 5.12 -51.93 -0.27 0.81 16 44 H 0.04 0.84 7.72 -51.93 -0.40 0.44 16 45 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -34.37 344.80 -8.83 -43.20 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.60 Total: 0.10 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.11 Total: 4.70 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.27 Total: -60.66 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.13 Total: 18.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.37 -8.83 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192598591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.316 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds