Wall clock time and date at job start Tue Mar 31 2020 11:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99578 * 2 1 4 4 H 1.48504 * 109.47172 * 271.30236 * 3 2 1 5 5 H 1.48494 * 109.47516 * 31.30725 * 3 2 1 6 6 H 1.48502 * 109.46940 * 151.30613 * 3 2 1 7 7 C 1.38809 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00242 * 346.23952 * 7 2 1 9 9 N 1.36937 * 119.99929 * 166.23277 * 7 2 1 10 10 C 1.46967 * 120.59365 * 327.67312 * 9 7 2 11 11 C 1.53376 * 108.63517 * 235.20716 * 10 9 7 12 12 N 1.46965 * 108.63356 * 310.57480 * 11 10 9 13 13 C 1.34773 * 120.59868 * 235.20574 * 12 11 10 14 14 O 1.21294 * 119.99557 * 5.23856 * 13 12 11 15 15 C 1.50693 * 120.00646 * 185.23818 * 13 12 11 16 16 H 1.09005 * 109.25390 * 25.89067 * 15 13 12 17 17 C 1.52721 * 109.26129 * 145.36765 * 15 13 12 18 18 C 1.53329 * 108.42916 * 171.52220 * 17 15 13 19 19 C 1.52773 * 108.34491 * 290.10360 * 18 17 15 20 20 C 1.50494 * 110.56262 * 50.80330 * 19 18 17 21 21 C 1.39187 * 117.97557 * 162.69823 * 20 19 18 22 22 C 1.38401 * 118.86737 * 179.79174 * 21 20 19 23 23 C 1.38238 * 118.84728 * 359.97438 * 22 21 20 24 24 N 1.31513 * 120.60878 * 0.08973 * 23 22 21 25 25 C 1.32701 * 122.39714 * 0.03372 * 24 23 22 26 26 C 1.46967 * 118.80969 * 55.47790 * 12 11 10 27 27 C 1.46967 * 120.59323 * 147.65598 * 9 7 2 28 28 H 0.96992 * 120.00264 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.61029 * 115.45991 * 10 9 7 30 30 H 1.08998 * 109.61211 * 354.94770 * 10 9 7 31 31 H 1.09001 * 109.60590 * 190.83389 * 11 10 9 32 32 H 1.08993 * 109.75008 * 70.40212 * 11 10 9 33 33 H 1.09002 * 109.67171 * 291.25521 * 17 15 13 34 34 H 1.08997 * 109.67204 * 51.74969 * 17 15 13 35 35 H 1.08990 * 109.68790 * 49.81519 * 18 17 15 36 36 H 1.08997 * 109.68757 * 170.35139 * 18 17 15 37 37 H 1.09003 * 109.25727 * 171.08013 * 19 18 17 38 38 H 1.09000 * 109.25826 * 290.52290 * 19 18 17 39 39 H 1.07998 * 120.56588 * 359.77931 * 21 20 19 40 40 H 1.08011 * 120.57505 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.69627 * 180.10619 * 23 22 21 42 42 H 1.09002 * 109.60777 * 64.26963 * 26 12 11 43 43 H 1.09002 * 109.60820 * 184.77742 * 26 12 11 44 44 H 1.09000 * 109.60712 * 244.53530 * 27 9 7 45 45 H 1.08996 * 109.61118 * 5.04666 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4700 2.0624 -1.3997 5 1 1.4617 2.6445 0.7275 6 1 3.5612 1.4324 0.6722 7 6 2.0103 -1.2021 0.0005 8 1 1.4937 -2.1239 0.2234 9 7 3.3502 -1.2192 -0.2817 10 6 3.9293 -0.2480 -1.2205 11 6 4.6719 -1.0143 -2.3222 12 7 5.5567 -2.0038 -1.6913 13 6 6.8754 -2.0207 -1.9690 14 8 7.3584 -1.1571 -2.6706 15 6 7.7497 -3.1122 -1.4080 16 1 7.1426 -3.9976 -1.2189 17 6 8.8393 -3.4559 -2.4215 18 6 9.8390 -4.4080 -1.7544 19 6 10.6180 -3.6250 -0.6990 20 6 9.6763 -2.8831 0.2108 21 6 10.1703 -2.4249 1.4287 22 6 9.3214 -1.7365 2.2777 23 6 8.0122 -1.5274 1.8863 24 7 7.5797 -1.9761 0.7282 25 6 8.3607 -2.6423 -0.1127 26 6 4.9766 -2.9784 -0.7568 27 6 4.2349 -2.2088 0.3492 28 1 -0.4850 0.8400 -0.0004 29 1 4.6275 0.4006 -0.6916 30 1 3.1340 0.3510 -1.6641 31 1 5.2654 -0.3184 -2.9153 32 1 3.9538 -1.5230 -2.9652 33 1 8.3931 -3.9415 -3.2894 34 1 9.3509 -2.5453 -2.7332 35 1 9.3028 -5.2301 -1.2803 36 1 10.5269 -4.8014 -2.5028 37 1 11.2181 -4.3170 -0.1081 38 1 11.2765 -2.9113 -1.1941 39 1 11.1985 -2.6037 1.7064 40 1 9.6757 -1.3690 3.2296 41 1 7.3383 -0.9904 2.5375 42 1 4.2778 -3.6241 -1.2886 43 1 5.7714 -3.5802 -0.3158 44 1 4.9550 -1.6998 0.9899 45 1 3.6414 -2.9045 0.9423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192598591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:07 Heat of formation + Delta-G solvation = 8.931996 kcal Electronic energy + Delta-G solvation = -27560.298436 eV Core-core repulsion = 23963.370266 eV Total energy + Delta-G solvation = -3596.928170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09447 -40.64953 -38.74000 -37.25444 -35.71830 -34.39790 -33.45373 -32.33298 -31.42116 -30.89493 -28.83610 -25.96403 -25.33746 -24.78233 -24.21789 -23.74943 -22.31222 -20.88296 -20.07237 -18.92015 -18.13907 -17.72593 -17.49820 -17.07212 -16.78780 -16.38505 -16.00915 -15.89892 -15.51985 -15.20193 -14.88978 -14.82063 -14.59262 -14.51181 -14.24967 -14.04034 -13.80739 -13.63626 -13.51688 -13.28252 -13.04214 -12.74563 -12.47622 -12.27300 -12.14960 -11.96318 -11.86648 -11.72034 -11.60454 -11.48951 -11.01687 -10.80900 -10.54450 -10.25163 -9.85201 -9.68330 -8.79919 -8.19467 -5.58328 0.13669 0.37068 1.24849 1.35875 1.44739 1.57611 2.00469 2.36376 2.81453 3.06994 3.17037 3.26422 3.49129 3.65535 3.82385 3.89652 4.03275 4.08380 4.12048 4.17128 4.19956 4.25999 4.35807 4.39816 4.46642 4.55366 4.57383 4.60846 4.65602 4.70110 4.81243 4.84907 4.90688 4.92691 4.98785 5.11489 5.18641 5.25059 5.28644 5.38899 5.42280 5.52068 5.80915 5.85879 6.11219 6.47632 6.86143 7.05406 7.16048 7.55467 8.00427 9.00202 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.004368 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.661531 B = 6408.465105 C = 7017.696057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.025 4.025 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.308 1.308 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.061 0.939 9 N -0.617 5.617 10 C 0.118 3.882 11 C 0.104 3.896 12 N -0.592 5.592 13 C 0.529 3.471 14 O -0.592 6.592 15 C -0.051 4.051 16 H 0.122 0.878 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.077 4.077 20 C -0.121 4.121 21 C -0.079 4.079 22 C -0.164 4.164 23 C 0.080 3.920 24 N -0.508 5.508 25 C 0.114 3.886 26 C 0.110 3.890 27 C 0.138 3.862 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.980 -11.397 1.032 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.220 4.220 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.236 1.236 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.342 5.342 10 C -0.008 4.008 11 C -0.020 4.020 12 N -0.323 5.323 13 C 0.319 3.681 14 O -0.473 6.473 15 C -0.072 4.072 16 H 0.139 0.861 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.184 4.184 23 C -0.079 4.079 24 N -0.217 5.217 25 C -0.022 4.022 26 C -0.014 4.014 27 C 0.012 3.988 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.186 0.814 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.058 0.942 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.201 -10.727 0.456 27.393 hybrid contribution 0.062 1.400 0.448 1.472 sum 25.263 -9.327 0.904 26.945 Atomic orbital electron populations 1.69877 1.07068 1.27156 1.56079 1.25898 0.95757 1.00494 0.99838 0.85976 0.78253 0.80853 0.77500 1.20482 1.23639 1.19535 1.18882 0.83470 0.93093 1.42004 0.92131 1.44372 1.04503 1.37040 1.48292 1.21606 0.95660 0.92344 0.91186 1.21940 0.92701 0.92149 0.95239 1.47957 1.07103 1.33095 1.44113 1.20794 0.81915 0.86306 0.79106 1.90607 1.73869 1.40899 1.41920 1.20251 0.97128 0.97015 0.92836 0.86082 1.21509 0.95393 1.00671 0.96608 1.21579 0.97776 0.97212 0.98304 1.20552 0.96094 0.98802 0.95954 1.20756 0.94194 1.00067 0.97271 1.21982 1.01450 0.94855 0.92217 1.22430 0.94218 0.99580 1.02152 1.22897 0.95630 0.96890 0.92481 1.67505 1.39745 1.09761 1.04670 1.20581 0.91203 0.96359 0.94013 1.22311 0.97890 0.90488 0.90716 1.21486 0.92215 0.91391 0.93665 0.92840 0.96196 0.92031 0.90102 0.90787 0.89938 0.92090 0.90382 0.88340 0.87670 0.89784 0.81400 0.81990 0.82819 0.91149 0.87771 0.94196 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.23 13.97 21.65 0.30 -59.93 16 2 C -0.02 -1.45 5.32 84.86 0.45 -1.00 16 3 Si 0.94 48.58 24.31 68.60 1.67 50.25 16 4 H -0.28 -13.70 6.65 99.48 0.66 -13.04 16 5 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 6 H -0.27 -13.80 6.37 99.48 0.63 -13.17 16 7 C -0.24 -13.90 10.04 84.03 0.84 -13.05 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 9 N -0.62 -29.80 2.70 -697.35 -1.88 -31.69 16 10 C 0.12 5.46 4.31 86.42 0.37 5.83 16 11 C 0.10 4.16 6.60 86.42 0.57 4.73 16 12 N -0.59 -21.21 2.94 -817.15 -2.40 -23.61 16 13 C 0.53 18.25 6.11 87.66 0.54 18.78 16 14 O -0.59 -24.38 15.49 -3.07 -0.05 -24.43 16 15 C -0.05 -1.27 1.91 -12.37 -0.02 -1.29 16 16 H 0.12 2.57 6.15 -2.38 -0.01 2.56 16 17 C -0.10 -2.03 5.04 30.61 0.15 -1.87 16 18 C -0.11 -1.31 5.99 30.63 0.18 -1.13 16 19 C -0.08 -0.91 5.68 29.71 0.17 -0.74 16 20 C -0.12 -2.27 5.74 -19.85 -0.11 -2.39 16 21 C -0.08 -1.22 9.75 22.54 0.22 -1.00 16 22 C -0.16 -2.85 10.12 22.31 0.23 -2.63 16 23 C 0.08 1.97 11.19 84.74 0.95 2.92 16 24 N -0.51 -14.93 8.34 -184.00 -1.53 -16.47 16 25 C 0.11 2.90 6.11 42.29 0.26 3.16 16 26 C 0.11 3.52 5.97 86.56 0.52 4.03 16 27 C 0.14 5.41 6.69 86.56 0.58 5.99 16 28 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.02 0.97 6.92 -2.39 -0.02 0.96 16 30 H 0.06 3.04 4.52 -2.39 -0.01 3.03 16 31 H 0.08 3.23 6.99 -2.39 -0.02 3.22 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.47 7.51 -2.39 -0.02 1.45 16 35 H 0.08 0.81 8.10 -2.39 -0.02 0.79 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 0.70 8.13 -2.39 -0.02 0.68 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.10 2.77 5.12 -2.39 -0.01 2.76 16 44 H 0.04 1.61 7.72 -2.39 -0.02 1.59 16 45 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 Total: -1.00 -76.66 344.80 2.87 -73.79 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.88 Total: 11.74 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 5.89 Total: 20.35 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -5.52 Total: -131.70 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.67 Total: 50.25 kcal Total: -76.66 2.87 -73.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192598591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.720 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds