Wall clock time and date at job start Tue Mar 31 2020 11:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35700 * 116.99935 * 2 1 4 4 C 1.38588 * 120.16070 * 0.02562 * 3 2 1 5 5 C 1.38149 * 120.11033 * 179.97438 * 4 3 2 6 6 C 1.38575 * 120.43664 * 0.02562 * 5 4 3 7 7 C 1.37745 * 120.32645 * 359.68262 * 6 5 4 8 8 C 1.39954 * 119.87449 * 0.59209 * 7 6 5 9 9 C 1.46894 * 120.21317 * 179.69923 * 8 7 6 10 10 C 1.35155 * 119.99955 * 48.46781 * 9 8 7 11 11 C 1.41784 * 120.00208 * 9.25137 * 10 9 8 12 12 O 1.21786 * 119.99759 * 6.82152 * 11 10 9 13 13 N 1.34773 * 120.00189 * 186.81000 * 11 10 9 14 14 C 1.36742 * 120.00200 * 354.60533 * 13 11 10 15 15 H 1.07995 * 120.00426 * 128.68125 * 14 13 11 16 16 C 1.39096 * 120.00206 * 308.40609 * 14 13 11 17 17 N 1.31338 * 120.00750 * 165.21848 * 16 14 13 18 18 Si 1.86810 * 119.99622 * 345.21977 * 16 14 13 19 19 H 1.48501 * 109.46887 * 1.56133 * 18 16 14 20 20 H 1.48495 * 109.47065 * 121.56330 * 18 16 14 21 21 H 1.48499 * 109.46856 * 241.56635 * 18 16 14 22 22 C 1.46508 * 119.99889 * 174.60274 * 13 11 10 23 23 C 1.54263 * 110.03303 * 57.91136 * 22 13 11 24 24 C 1.54965 * 104.15957 * 217.13755 * 23 22 13 25 25 C 1.54891 * 102.77713 * 37.88394 * 24 23 22 26 26 C 1.53878 * 110.03099 * 300.68972 * 22 13 11 27 27 H 1.09005 * 109.46811 * 60.00313 * 1 2 3 28 28 H 1.08994 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47349 * 300.00770 * 1 2 3 30 30 H 1.07998 * 119.94726 * 359.95992 * 4 3 2 31 31 H 1.07995 * 119.78065 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.83011 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.06375 * 180.30047 * 7 6 5 34 34 H 1.08000 * 119.99784 * 228.45984 * 9 8 7 35 35 H 1.08001 * 120.00234 * 189.26558 * 10 9 8 36 36 H 0.97004 * 119.99420 * 359.97438 * 17 16 14 37 37 H 1.08997 * 110.01414 * 179.30290 * 22 13 11 38 38 H 1.08999 * 110.48554 * 335.77960 * 23 22 13 39 39 H 1.08992 * 110.48724 * 98.42304 * 23 22 13 40 40 H 1.09003 * 110.71857 * 279.57690 * 24 23 22 41 41 H 1.08991 * 110.92354 * 156.29392 * 24 23 22 42 42 H 1.09003 * 110.48657 * 203.40548 * 25 24 23 43 43 H 1.09006 * 110.59777 * 80.82219 * 25 24 23 44 44 H 1.08994 * 110.03039 * 238.56880 * 26 22 13 45 45 H 1.08994 * 110.03328 * 359.95437 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2935 2.3735 0.0005 5 6 1.9218 3.6039 0.0011 6 6 3.3051 3.6857 0.0005 7 6 4.0697 2.5400 0.0061 8 6 3.4472 1.2865 -0.0003 9 6 4.2553 0.0598 -0.0011 10 6 5.2718 -0.0803 0.8785 11 6 5.4375 0.8604 1.9262 12 8 4.5962 1.7217 2.1099 13 7 6.5258 0.8015 2.7190 14 6 7.4142 -0.2294 2.5852 15 1 8.4683 -0.0228 2.4731 16 6 6.9609 -1.5444 2.5991 17 7 7.7453 -2.5139 2.1869 18 14 5.2364 -1.9315 3.2040 19 1 4.5469 -0.6695 3.5743 20 1 4.4755 -2.6137 2.1267 21 1 5.3163 -2.8189 4.3920 22 6 6.7571 1.8419 3.7242 23 6 5.5579 1.9179 4.6917 24 6 5.4066 3.4311 4.9897 25 6 5.7228 4.0832 3.6208 26 6 6.8623 3.2181 3.0438 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 0.2149 2.3190 0.0003 31 1 1.3309 4.5078 0.0019 32 1 3.7861 4.6528 0.0005 33 1 5.1475 2.6087 0.0105 34 1 4.0370 -0.7301 -0.7046 35 1 5.9580 -0.9088 0.7832 36 1 8.6406 -2.3128 1.8724 37 1 7.6710 1.6286 4.2784 38 1 4.6575 1.5315 4.2142 39 1 5.7714 1.3673 5.6077 40 1 6.1258 3.7493 5.7444 41 1 4.3897 3.6661 5.3039 42 1 6.0561 5.1121 3.7562 43 1 4.8499 4.0486 2.9688 44 1 7.8269 3.6729 3.2686 45 1 6.7421 3.1117 1.9657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255552693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:09 Heat of formation + Delta-G solvation = -10.188487 kcal Electronic energy + Delta-G solvation = -28055.660759 eV Core-core repulsion = 24425.610712 eV Total energy + Delta-G solvation = -3630.050048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.05459 -39.34314 -37.18115 -36.33455 -34.45854 -33.06280 -31.72141 -29.74714 -29.40704 -28.05230 -27.30804 -26.84880 -24.22035 -23.28274 -21.63984 -21.33259 -20.16443 -19.36202 -18.64980 -17.93881 -17.05106 -16.01458 -15.70995 -15.52627 -15.37993 -15.07365 -14.48403 -14.36934 -13.97523 -13.75866 -13.44429 -13.36604 -13.06813 -12.74741 -12.58009 -12.18017 -12.09815 -11.89018 -11.69221 -11.11907 -11.04698 -11.00987 -10.86832 -10.66926 -10.53125 -10.46743 -10.43857 -10.15198 -9.92486 -9.86518 -9.70418 -9.16966 -8.90648 -8.45118 -7.95605 -7.58776 -7.28058 -6.74952 -4.24991 1.41506 1.96868 2.44886 3.34282 3.37578 3.55739 3.56131 4.21012 4.30636 4.44625 4.63981 4.96081 5.07015 5.21005 5.23559 5.28864 5.30202 5.34704 5.47197 5.52950 5.53582 5.74161 5.82766 5.95738 5.99870 6.11882 6.19485 6.21462 6.27899 6.29083 6.38487 6.42108 6.50394 6.58835 6.63216 6.69331 6.80021 6.91172 6.97278 6.98955 7.09605 7.11778 7.21246 7.32206 7.72693 7.78602 7.99093 8.58643 8.72841 9.44375 9.83604 10.52773 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.007109 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.758822 B = 3937.979797 C = 5370.437880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.129 3.871 4 C -0.221 4.221 5 C -0.084 4.084 6 C -0.167 4.167 7 C 0.004 3.996 8 C -0.062 4.062 9 C -0.064 4.064 10 C -0.182 4.182 11 C 0.507 3.493 12 O -0.572 6.572 13 N -0.452 5.452 14 C -0.418 4.418 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.873 5.873 18 Si 1.031 2.969 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.287 1.287 22 C 0.139 3.861 23 C -0.135 4.135 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.120 4.120 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.277 0.723 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 8.821 -2.916 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.084 3.916 4 C -0.240 4.240 5 C -0.103 4.103 6 C -0.186 4.186 7 C -0.014 4.014 8 C -0.063 4.063 9 C -0.085 4.085 10 C -0.202 4.202 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.172 5.172 14 C -0.546 4.546 15 H 0.098 0.902 16 C -0.175 4.175 17 N -0.505 5.505 18 Si 0.857 3.143 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.214 1.214 22 C 0.034 3.966 23 C -0.173 4.173 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.870 7.796 -2.537 13.615 hybrid contribution 1.155 1.033 0.012 1.550 sum -9.715 8.829 -2.525 13.368 Atomic orbital electron populations 1.22969 0.79269 1.03377 1.00902 1.86036 1.20572 1.27355 1.88792 1.19062 0.91412 0.83805 0.97278 1.20892 0.99038 0.92456 1.11633 1.20761 0.94596 0.96253 0.98654 1.20737 0.93617 0.97961 1.06242 1.20836 0.99090 0.90311 0.91198 1.18193 0.89124 0.94097 1.04863 1.22017 0.93556 0.94972 0.97957 1.22657 0.98955 1.02189 0.96376 1.17134 0.83705 0.85679 0.83388 1.90718 1.43315 1.39085 1.72699 1.43811 1.21883 1.22827 1.28647 1.20400 0.91615 0.85641 1.56966 0.90223 1.26642 1.05635 0.91291 0.93925 1.70770 1.09795 1.34245 1.35727 0.84024 0.75284 0.77220 0.77772 1.19001 1.20055 1.21378 1.21754 0.97322 0.88022 0.89461 1.22755 1.00884 0.95501 0.98159 1.22347 1.00016 0.96092 0.96881 1.22217 0.99286 0.96676 0.96753 1.22364 0.97265 0.95507 1.00729 0.93091 0.88692 0.93004 0.86438 0.86936 0.86841 0.86414 0.85842 0.83832 0.91217 0.90536 0.89274 0.93097 0.92747 0.92543 0.93518 0.90521 0.93141 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.31 9.95 -18.80 -0.19 -5.49 16 3 C 0.13 2.31 6.71 -38.63 -0.26 2.05 16 4 C -0.22 -3.40 9.03 -39.48 -0.36 -3.75 16 5 C -0.08 -1.24 10.03 -39.49 -0.40 -1.64 16 6 C -0.17 -2.66 10.02 -39.64 -0.40 -3.06 16 7 C 0.00 0.07 6.70 -39.12 -0.26 -0.19 16 8 C -0.06 -1.20 4.35 -104.93 -0.46 -1.66 16 9 C -0.06 -1.30 9.34 -37.18 -0.35 -1.65 16 10 C -0.18 -4.12 6.48 -39.32 -0.25 -4.37 16 11 C 0.51 11.82 3.22 -14.91 -0.05 11.77 16 12 O -0.57 -13.14 8.19 5.11 0.04 -13.09 16 13 N -0.45 -10.69 1.93 -109.70 -0.21 -10.90 16 14 C -0.42 -10.79 8.95 -15.04 -0.13 -10.93 16 15 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 16 C 0.03 0.93 3.83 -17.44 -0.07 0.86 16 17 N -0.87 -24.13 13.69 55.50 0.76 -23.37 16 18 Si 1.03 25.27 25.14 -169.99 -4.27 21.00 16 19 H -0.27 -6.61 5.67 56.52 0.32 -6.29 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.14 2.89 3.30 -66.81 -0.22 2.67 16 23 C -0.13 -2.67 6.07 -25.03 -0.15 -2.82 16 24 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 25 C -0.11 -1.87 6.40 -25.07 -0.16 -2.03 16 26 C -0.12 -2.21 5.82 -25.61 -0.15 -2.36 16 27 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 30 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 33 H 0.12 2.22 7.38 -52.49 -0.39 1.84 16 34 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.14 3.49 5.15 -52.49 -0.27 3.22 16 36 H 0.28 7.49 8.73 -40.82 -0.36 7.14 16 37 H 0.08 1.59 7.92 -51.93 -0.41 1.18 16 38 H 0.09 2.03 5.55 -51.93 -0.29 1.75 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.41 7.39 -51.93 -0.38 1.03 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.28 7.21 -51.93 -0.37 0.91 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -28.76 347.77 -8.17 -36.93 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.70 Total: 7.53 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.84 Total: -17.84 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.55 Total: -34.28 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.15 Total: -18.59 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -4.27 Total: 21.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.76 -8.17 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255552693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.742 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds