Wall clock time and date at job start Tue Mar 31 2020 11:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35700 * 116.99935 * 2 1 4 4 C 1.38588 * 120.16070 * 0.02562 * 3 2 1 5 5 C 1.38149 * 120.11033 * 179.97438 * 4 3 2 6 6 C 1.38575 * 120.43664 * 0.02562 * 5 4 3 7 7 C 1.37745 * 120.32645 * 359.68262 * 6 5 4 8 8 C 1.39954 * 119.87449 * 0.59209 * 7 6 5 9 9 C 1.46894 * 120.21317 * 179.69923 * 8 7 6 10 10 C 1.35155 * 119.99955 * 48.46781 * 9 8 7 11 11 C 1.41784 * 120.00208 * 9.25137 * 10 9 8 12 12 O 1.21786 * 119.99759 * 6.82152 * 11 10 9 13 13 N 1.34773 * 120.00189 * 186.81000 * 11 10 9 14 14 C 1.36742 * 120.00200 * 354.60533 * 13 11 10 15 15 H 1.07995 * 120.00426 * 128.68125 * 14 13 11 16 16 C 1.39096 * 120.00206 * 308.40609 * 14 13 11 17 17 N 1.31338 * 120.00750 * 165.21848 * 16 14 13 18 18 Si 1.86810 * 119.99622 * 345.21977 * 16 14 13 19 19 H 1.48501 * 109.46887 * 1.56133 * 18 16 14 20 20 H 1.48495 * 109.47065 * 121.56330 * 18 16 14 21 21 H 1.48499 * 109.46856 * 241.56635 * 18 16 14 22 22 C 1.46508 * 119.99889 * 174.60274 * 13 11 10 23 23 C 1.54263 * 110.03303 * 57.91136 * 22 13 11 24 24 C 1.54965 * 104.15957 * 217.13755 * 23 22 13 25 25 C 1.54891 * 102.77713 * 37.88394 * 24 23 22 26 26 C 1.53878 * 110.03099 * 300.68972 * 22 13 11 27 27 H 1.09005 * 109.46811 * 60.00313 * 1 2 3 28 28 H 1.08994 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47349 * 300.00770 * 1 2 3 30 30 H 1.07998 * 119.94726 * 359.95992 * 4 3 2 31 31 H 1.07995 * 119.78065 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.83011 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.06375 * 180.30047 * 7 6 5 34 34 H 1.08000 * 119.99784 * 228.45984 * 9 8 7 35 35 H 1.08001 * 120.00234 * 189.26558 * 10 9 8 36 36 H 0.97004 * 119.99420 * 359.97438 * 17 16 14 37 37 H 1.08997 * 110.01414 * 179.30290 * 22 13 11 38 38 H 1.08999 * 110.48554 * 335.77960 * 23 22 13 39 39 H 1.08992 * 110.48724 * 98.42304 * 23 22 13 40 40 H 1.09003 * 110.71857 * 279.57690 * 24 23 22 41 41 H 1.08991 * 110.92354 * 156.29392 * 24 23 22 42 42 H 1.09003 * 110.48657 * 203.40548 * 25 24 23 43 43 H 1.09006 * 110.59777 * 80.82219 * 25 24 23 44 44 H 1.08994 * 110.03039 * 238.56880 * 26 22 13 45 45 H 1.08994 * 110.03328 * 359.95437 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2935 2.3735 0.0005 5 6 1.9218 3.6039 0.0011 6 6 3.3051 3.6857 0.0005 7 6 4.0697 2.5400 0.0061 8 6 3.4472 1.2865 -0.0003 9 6 4.2553 0.0598 -0.0011 10 6 5.2718 -0.0803 0.8785 11 6 5.4375 0.8604 1.9262 12 8 4.5962 1.7217 2.1099 13 7 6.5258 0.8015 2.7190 14 6 7.4142 -0.2294 2.5852 15 1 8.4683 -0.0228 2.4731 16 6 6.9609 -1.5444 2.5991 17 7 7.7453 -2.5139 2.1869 18 14 5.2364 -1.9315 3.2040 19 1 4.5469 -0.6695 3.5743 20 1 4.4755 -2.6137 2.1267 21 1 5.3163 -2.8189 4.3920 22 6 6.7571 1.8419 3.7242 23 6 5.5579 1.9179 4.6917 24 6 5.4066 3.4311 4.9897 25 6 5.7228 4.0832 3.6208 26 6 6.8623 3.2181 3.0438 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 0.2149 2.3190 0.0003 31 1 1.3309 4.5078 0.0019 32 1 3.7861 4.6528 0.0005 33 1 5.1475 2.6087 0.0105 34 1 4.0370 -0.7301 -0.7046 35 1 5.9580 -0.9088 0.7832 36 1 8.6406 -2.3128 1.8724 37 1 7.6710 1.6286 4.2784 38 1 4.6575 1.5315 4.2142 39 1 5.7714 1.3673 5.6077 40 1 6.1258 3.7493 5.7444 41 1 4.3897 3.6661 5.3039 42 1 6.0561 5.1121 3.7562 43 1 4.8499 4.0486 2.9688 44 1 7.8269 3.6729 3.2686 45 1 6.7421 3.1117 1.9657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255552693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:01 Heat of formation + Delta-G solvation = -25.136588 kcal Electronic energy + Delta-G solvation = -28056.308958 eV Core-core repulsion = 24425.610712 eV Total energy + Delta-G solvation = -3630.698246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -41.62001 -40.75396 -38.54672 -37.76476 -36.31062 -34.61733 -33.65400 -31.03554 -30.77242 -29.52519 -28.76196 -27.97021 -26.08444 -24.89319 -22.97044 -22.76404 -21.59739 -20.90906 -20.56747 -19.34765 -18.56556 -17.60536 -17.32522 -16.89443 -16.58913 -16.46097 -16.26723 -15.79885 -15.52864 -15.22998 -15.07266 -14.94853 -14.44726 -14.38860 -14.09630 -13.75036 -13.54515 -13.36057 -12.87258 -12.66718 -12.60088 -12.48857 -12.34329 -12.06445 -11.92277 -11.89881 -11.81401 -11.77856 -11.68323 -11.55383 -11.32291 -10.94563 -10.63510 -10.19964 -9.64867 -9.14957 -8.79482 -8.73310 -6.31665 -0.08303 0.68715 0.96693 1.35851 1.37151 1.57986 2.21175 2.45044 2.59322 2.91275 2.98867 3.02674 3.82307 3.86613 3.88860 4.02677 4.08773 4.17955 4.32088 4.36571 4.42015 4.51879 4.56353 4.60966 4.66326 4.72510 4.73676 4.75722 4.78875 4.87686 4.91473 5.00001 5.13135 5.15423 5.22485 5.24576 5.36192 5.40308 5.46414 5.55324 5.62603 5.64574 5.69925 5.80873 5.99505 6.01267 6.57699 6.60373 6.74020 7.56298 7.95920 8.44400 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.007109 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.758822 B = 3937.979797 C = 5370.437880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.124 3.876 4 C -0.221 4.221 5 C -0.072 4.072 6 C -0.172 4.172 7 C -0.008 4.008 8 C -0.105 4.105 9 C -0.030 4.030 10 C -0.226 4.226 11 C 0.515 3.485 12 O -0.567 6.567 13 N -0.469 5.469 14 C -0.410 4.410 15 H 0.056 0.944 16 C 0.012 3.988 17 N -0.901 5.901 18 Si 1.063 2.937 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.281 1.281 22 C 0.129 3.871 23 C -0.134 4.134 24 C -0.105 4.105 25 C -0.103 4.103 26 C -0.115 4.115 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.270 0.730 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 11.389 -2.639 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.079 3.921 4 C -0.239 4.239 5 C -0.090 4.090 6 C -0.190 4.190 7 C -0.027 4.027 8 C -0.105 4.105 9 C -0.051 4.051 10 C -0.247 4.247 11 C 0.309 3.691 12 O -0.453 6.453 13 N -0.190 5.190 14 C -0.539 4.539 15 H 0.074 0.926 16 C -0.194 4.194 17 N -0.535 5.535 18 Si 0.888 3.112 19 H -0.199 1.199 20 H -0.197 1.197 21 H -0.208 1.208 22 C 0.025 3.975 23 C -0.173 4.173 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.153 4.153 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.781 10.375 -2.263 17.398 hybrid contribution 1.893 0.357 -0.218 1.939 sum -11.888 10.732 -2.482 16.207 Atomic orbital electron populations 1.23325 0.76513 1.05307 1.02291 1.85997 1.23497 1.27318 1.88627 1.19222 0.90997 0.85130 0.96787 1.21294 1.00668 0.91669 1.10296 1.21244 0.94246 0.97615 0.95900 1.21023 0.94467 0.97921 1.05592 1.20778 0.98475 0.91132 0.92276 1.18292 0.90317 0.93705 1.08233 1.22350 0.91552 0.95414 0.95759 1.22463 1.00900 1.02840 0.98473 1.17169 0.83268 0.85484 0.83168 1.90697 1.42959 1.38886 1.72746 1.43851 1.21817 1.23215 1.30121 1.20161 0.90936 0.86447 1.56307 0.92587 1.27195 1.06961 0.91449 0.93769 1.70808 1.09917 1.34786 1.37995 0.83573 0.73384 0.76654 0.77595 1.19869 1.19734 1.20773 1.21951 0.97681 0.88460 0.89424 1.22696 0.98701 0.98266 0.97604 1.22329 1.01525 0.93064 0.97359 1.22143 0.97664 0.97991 0.96235 1.22315 0.99264 0.94610 0.99147 0.90928 0.86756 0.92184 0.83161 0.83021 0.84760 0.88369 0.84447 0.86099 0.91928 0.91042 0.92461 0.92735 0.90201 0.91398 0.90332 0.92414 0.91156 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.34 -10.88 9.95 -90.20 -0.90 -11.78 16 3 C 0.12 4.19 6.71 22.89 0.15 4.35 16 4 C -0.22 -5.96 9.03 22.33 0.20 -5.76 16 5 C -0.07 -1.83 10.03 22.33 0.22 -1.61 16 6 C -0.17 -5.08 10.02 22.23 0.22 -4.85 16 7 C -0.01 -0.29 6.70 22.57 0.15 -0.14 16 8 C -0.10 -4.02 4.35 -20.06 -0.09 -4.11 16 9 C -0.03 -1.25 9.34 23.83 0.22 -1.03 16 10 C -0.23 -10.71 6.48 22.44 0.15 -10.56 16 11 C 0.52 24.78 3.22 85.12 0.27 25.05 16 12 O -0.57 -26.40 8.19 -4.62 -0.04 -26.44 16 13 N -0.47 -22.98 1.93 -619.16 -1.20 -24.18 16 14 C -0.41 -22.21 8.95 84.13 0.75 -21.46 16 15 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 16 C 0.01 0.65 3.83 84.97 0.33 0.98 16 17 N -0.90 -51.92 13.69 21.69 0.30 -51.63 16 18 Si 1.06 53.00 25.14 68.60 1.72 54.72 16 19 H -0.27 -13.89 5.67 99.48 0.56 -13.33 16 20 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 22 C 0.13 5.41 3.30 45.71 0.15 5.56 16 23 C -0.13 -5.25 6.07 31.69 0.19 -5.05 16 24 C -0.11 -3.18 6.91 31.91 0.22 -2.96 16 25 C -0.10 -3.18 6.40 31.67 0.20 -2.98 16 26 C -0.11 -4.15 5.82 31.32 0.18 -3.97 16 27 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.10 7.66 -2.38 -0.02 1.08 16 30 H 0.15 3.01 6.30 -2.91 -0.02 2.99 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 33 H 0.10 3.85 7.38 -2.91 -0.02 3.83 16 34 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 35 H 0.12 6.24 5.15 -2.91 -0.01 6.23 16 36 H 0.27 15.42 8.73 -92.71 -0.81 14.62 16 37 H 0.07 3.01 7.92 -2.39 -0.02 2.99 16 38 H 0.06 2.62 5.55 -2.39 -0.01 2.60 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.02 7.39 -2.38 -0.02 2.00 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.69 7.21 -2.39 -0.02 1.67 16 Total: -1.00 -65.11 347.77 5.34 -59.78 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.80 Total: 26.57 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.65 Total: -27.04 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -0.90 Total: -75.81 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.94 Total: -38.22 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.72 Total: 54.72 kcal Total: -65.11 5.34 -59.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255552693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.639 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds