Wall clock time and date at job start Tue Mar 31 2020 11:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00090 * 2 1 4 4 C 1.53000 * 109.46793 * 269.99621 * 3 2 1 5 5 C 1.53774 * 113.61466 * 274.13684 * 4 3 2 6 6 C 1.53962 * 87.01953 * 220.04834 * 5 4 3 7 7 C 1.53779 * 113.61175 * 176.52942 * 4 3 2 8 8 C 1.34779 * 119.99961 * 179.97438 * 2 1 3 9 9 O 1.21723 * 119.99946 * 179.97438 * 8 2 1 10 10 C 1.46257 * 120.00113 * 0.02562 * 8 2 1 11 11 C 1.35019 * 120.00268 * 173.04236 * 10 8 2 12 12 C 1.46962 * 119.99873 * 348.96957 * 11 10 8 13 13 C 1.40028 * 120.09635 * 311.71804 * 12 11 10 14 14 C 1.37600 * 119.89006 * 179.70043 * 13 12 11 15 15 C 1.39172 * 120.10722 * 0.59657 * 14 13 12 16 16 O 1.35572 * 119.90329 * 179.69730 * 15 14 13 17 17 C 1.34782 * 116.99884 * 185.58490 * 16 15 14 18 18 H 1.07995 * 120.00581 * 354.91243 * 17 16 15 19 19 C 1.38722 * 119.99625 * 174.91348 * 17 16 15 20 20 N 1.31510 * 120.00256 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47032 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47651 * 119.99466 * 21 19 17 24 24 H 1.48500 * 109.47031 * 239.99871 * 21 19 17 25 25 C 1.39177 * 120.19883 * 359.67527 * 15 14 13 26 26 C 1.37593 * 120.10503 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47445 * 270.00413 * 1 2 3 28 28 H 1.08996 * 109.47158 * 30.00262 * 1 2 3 29 29 H 1.09005 * 109.47200 * 150.00242 * 1 2 3 30 30 H 1.08999 * 109.46901 * 29.99791 * 3 2 1 31 31 H 1.08996 * 109.47060 * 149.99972 * 3 2 1 32 32 H 1.09005 * 112.84897 * 45.33723 * 4 3 2 33 33 H 1.09003 * 113.61634 * 334.56847 * 5 4 3 34 34 H 1.09003 * 113.61561 * 105.47718 * 5 4 3 35 35 H 1.08998 * 113.53642 * 270.81262 * 6 5 4 36 36 H 1.09002 * 113.66331 * 139.92782 * 6 5 4 37 37 H 1.09003 * 113.61711 * 254.53058 * 7 4 3 38 38 H 1.08998 * 113.61355 * 25.34634 * 7 4 3 39 39 H 1.08002 * 119.99574 * 353.04886 * 10 8 2 40 40 H 1.07992 * 120.00079 * 169.24170 * 11 10 8 41 41 H 1.07997 * 120.05561 * 359.97438 * 13 12 11 42 42 H 1.08011 * 119.94893 * 180.27332 * 14 13 12 43 43 H 0.96999 * 120.00305 * 179.97438 * 20 19 17 44 44 H 1.08001 * 119.94612 * 179.97438 * 25 15 14 45 45 H 1.07995 * 120.05389 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.7243 1.1024 -2.0571 6 6 3.9736 2.4782 -2.7017 7 6 3.1444 3.0791 -1.5545 8 6 2.1388 -1.1672 0.0005 9 8 3.3561 -1.1672 0.0001 10 6 1.4076 -2.4339 0.0005 11 6 2.0752 -3.5989 -0.1406 12 6 3.4910 -3.5914 -0.5345 13 6 3.9135 -2.8154 -1.6209 14 6 5.2412 -2.8067 -1.9822 15 6 6.1615 -3.5771 -1.2776 16 8 7.4676 -3.5702 -1.6410 17 6 8.2870 -4.4235 -0.9951 18 1 7.9122 -5.0130 -0.1716 19 6 9.6118 -4.5443 -1.3883 20 7 10.0682 -3.8268 -2.3914 21 14 10.7473 -5.7274 -0.4937 22 1 9.9957 -6.4116 0.5891 23 1 11.2647 -6.7371 -1.4518 24 1 11.8842 -4.9738 0.0934 25 6 5.7452 -4.3543 -0.2008 26 6 4.4206 -4.3646 0.1717 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 1.5715 1.6131 -2.0770 33 1 4.4760 0.8236 -1.3185 34 1 3.5249 0.3106 -2.7792 35 1 3.5093 2.5903 -3.6814 36 1 5.0200 2.7834 -2.6904 37 1 2.4774 3.8809 -1.8714 38 1 3.7359 3.3424 -0.6777 39 1 0.3335 -2.4372 0.1133 40 1 1.5677 -4.5364 0.0317 41 1 3.1992 -2.2213 -2.1715 42 1 5.5689 -2.2050 -2.8172 43 1 10.9946 -3.9110 -2.6661 44 1 6.4627 -4.9509 0.3429 45 1 4.0985 -4.9676 1.0077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255615414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:47 Heat of formation + Delta-G solvation = -5.924072 kcal Electronic energy + Delta-G solvation = -26240.987352 eV Core-core repulsion = 22611.122224 eV Total energy + Delta-G solvation = -3629.865129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22249 -40.55963 -39.42377 -38.17657 -36.18062 -34.61326 -33.92389 -31.82607 -30.49639 -29.21021 -27.49423 -27.21082 -26.43150 -24.97537 -23.60886 -23.25217 -21.82761 -20.30907 -19.94390 -19.40593 -18.71558 -18.21055 -17.07886 -16.59271 -16.44137 -16.23501 -16.17899 -15.68952 -15.51701 -15.34220 -14.86323 -14.52126 -14.49869 -14.27919 -13.87779 -13.69228 -13.68536 -13.57441 -13.35182 -13.14521 -12.95917 -12.82551 -12.61357 -12.36438 -12.33533 -12.15545 -12.10058 -11.60485 -11.30970 -11.22277 -11.08812 -10.91368 -10.51423 -10.36322 -9.72348 -9.34785 -8.57136 -8.48619 -6.15878 0.05942 0.71233 1.09162 1.32850 1.43630 1.52230 2.16724 2.25159 2.53117 2.86144 3.22375 3.50637 3.62782 3.79561 3.82365 3.92702 4.00275 4.03756 4.13306 4.16408 4.41849 4.45618 4.49935 4.54568 4.59488 4.63318 4.76182 4.81761 4.85425 4.90937 5.00304 5.01731 5.04478 5.07193 5.10047 5.11376 5.25133 5.28103 5.35239 5.45037 5.59089 5.67049 5.72371 5.77251 5.85870 6.02491 6.25384 6.61064 6.95381 7.47709 7.78215 8.74942 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003519 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.448945 B = 7954.194705 C = 9338.613130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.617 5.617 3 C 0.126 3.874 4 C -0.112 4.112 5 C -0.136 4.136 6 C -0.146 4.146 7 C -0.119 4.119 8 C 0.521 3.479 9 O -0.559 6.559 10 C -0.228 4.228 11 C -0.001 4.001 12 C -0.148 4.148 13 C 0.008 3.992 14 C -0.212 4.212 15 C 0.124 3.876 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.022 2.978 22 H -0.251 1.251 23 H -0.265 1.265 24 H -0.268 1.268 25 C -0.254 4.254 26 C -0.052 4.052 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.751 8.312 5.490 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.003 3.997 4 C -0.131 4.131 5 C -0.174 4.174 6 C -0.184 4.184 7 C -0.157 4.157 8 C 0.313 3.687 9 O -0.438 6.438 10 C -0.249 4.249 11 C -0.020 4.020 12 C -0.149 4.149 13 C -0.011 4.011 14 C -0.232 4.232 15 C 0.073 3.927 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.841 3.159 22 H -0.174 1.174 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.273 4.273 26 C -0.070 4.070 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.835 8.506 5.224 25.841 hybrid contribution 1.332 -0.289 -0.015 1.364 sum -22.503 8.217 5.209 24.516 Atomic orbital electron populations 1.22058 0.77208 1.04636 1.02990 1.47924 1.08310 1.05237 1.73562 1.21445 0.97033 0.85101 0.96098 1.22882 0.97085 0.96477 0.96656 1.22842 0.98572 0.96551 0.99406 1.22912 1.00369 0.96048 0.99048 1.22791 0.98627 0.95986 0.98257 1.19102 0.87417 0.85710 0.76477 1.90992 1.15327 1.87489 1.50037 1.23219 1.01451 0.90758 1.09446 1.22579 0.90646 0.99221 0.89559 1.18847 0.94891 1.02093 0.99086 1.20569 0.92711 0.92994 0.94791 1.20126 0.93427 1.05942 1.03689 1.19987 0.84572 0.94503 0.93591 1.83877 1.14863 1.56460 1.58706 1.21918 0.91602 1.20128 1.15456 0.88108 1.26666 0.98069 0.99926 0.97470 1.70184 1.16756 1.41046 1.27956 0.84496 0.76938 0.76618 0.77896 1.17407 1.19007 1.19294 1.21074 0.98052 1.06876 1.01336 1.21134 0.91166 0.96593 0.98100 0.91399 0.89559 0.89514 0.87936 0.93100 0.88086 0.93036 0.94121 0.89232 0.92524 0.89121 0.90304 0.81100 0.81526 0.86594 0.88425 0.91789 0.86393 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.10 127.77 1.29 1.99 16 2 N -0.62 -12.27 2.87 -852.00 -2.45 -14.71 16 3 C 0.13 2.57 5.23 86.38 0.45 3.02 16 4 C -0.11 -2.25 3.96 -10.27 -0.04 -2.29 16 5 C -0.14 -3.92 7.02 31.18 0.22 -3.71 16 6 C -0.15 -3.34 8.09 31.18 0.25 -3.09 16 7 C -0.12 -2.11 7.65 31.12 0.24 -1.87 16 8 C 0.52 14.21 6.81 86.33 0.59 14.80 16 9 O -0.56 -21.35 11.14 -4.42 -0.05 -21.40 16 10 C -0.23 -4.68 9.05 23.61 0.21 -4.46 16 11 C 0.00 -0.02 9.77 23.82 0.23 0.21 16 12 C -0.15 -5.26 4.34 -20.12 -0.09 -5.34 16 13 C 0.01 0.31 6.77 22.55 0.15 0.46 16 14 C -0.21 -10.55 9.97 22.34 0.22 -10.33 16 15 C 0.12 6.88 6.66 22.72 0.15 7.04 16 16 O -0.23 -15.15 9.74 -20.30 -0.20 -15.35 16 17 C -0.42 -25.69 9.48 67.94 0.64 -25.05 16 18 H 0.10 5.76 5.18 -2.91 -0.02 5.75 16 19 C -0.02 -1.44 5.49 84.86 0.47 -0.97 16 20 N -0.92 -59.04 13.67 21.62 0.30 -58.75 16 21 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C -0.25 -12.26 9.14 22.34 0.20 -12.06 16 26 C -0.05 -2.00 9.78 22.55 0.22 -1.78 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.54 8.07 -2.39 -0.02 0.52 16 29 H 0.09 0.61 6.19 -2.38 -0.01 0.59 16 30 H 0.10 1.42 8.07 -2.39 -0.02 1.40 16 31 H 0.05 1.41 7.15 -2.39 -0.02 1.39 16 32 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.05 1.89 7.64 -2.39 -0.02 1.87 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.44 8.10 -2.39 -0.02 1.43 16 39 H 0.17 1.87 6.34 -2.91 -0.02 1.85 16 40 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.12 4.23 7.46 -2.91 -0.02 4.21 16 42 H 0.10 4.94 8.06 -2.90 -0.02 4.92 16 43 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 44 H 0.12 5.71 5.62 -2.91 -0.02 5.70 16 45 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -83.83 368.78 6.03 -77.80 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.98 Total: 29.03 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 5.42 Total: -43.43 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -2.15 Total: -73.46 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.25 Total: -36.75 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -83.83 6.03 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255615414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.874 kcal (2) G-P(sol) polarization free energy of solvation -83.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds