Wall clock time and date at job start Tue Mar 31 2020 10:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33410 * 119.99979 * 2 1 4 4 C 1.46336 * 119.99884 * 179.97438 * 3 2 1 5 5 C 1.35193 * 120.00027 * 185.65509 * 4 3 2 6 6 C 1.46225 * 119.99816 * 354.46493 * 5 4 3 7 7 O 1.21735 * 120.00029 * 5.94026 * 6 5 4 8 8 N 1.34774 * 119.99729 * 185.93651 * 6 5 4 9 9 C 1.46505 * 120.00342 * 5.42786 * 8 6 5 10 10 C 1.50692 * 109.46879 * 269.99896 * 9 8 6 11 11 H 1.07998 * 120.00404 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00021 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99861 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00275 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46724 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47328 * 119.99540 * 14 12 10 17 17 H 1.48501 * 109.47096 * 239.99908 * 14 12 10 18 18 C 1.40005 * 119.99901 * 185.42244 * 8 6 5 19 19 C 1.38870 * 120.01332 * 55.83896 * 18 8 6 20 20 C 1.38088 * 119.98183 * 180.22871 * 19 18 8 21 21 C 1.38725 * 120.01358 * 359.51906 * 20 19 18 22 22 O 1.35977 * 119.98008 * 180.20619 * 21 20 19 23 23 C 1.42899 * 117.00020 * 0.25482 * 22 21 20 24 24 C 1.53006 * 109.46626 * 179.97438 * 23 22 21 25 25 C 1.38727 * 120.03581 * 0.45800 * 21 20 19 26 26 C 1.38081 * 120.01835 * 359.79621 * 25 21 20 27 27 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47401 * 300.00410 * 1 2 3 29 29 H 1.09001 * 109.46968 * 60.00545 * 1 2 3 30 30 H 1.07999 * 119.99763 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00257 * 359.97438 * 3 2 1 32 32 H 1.08005 * 119.99871 * 5.65851 * 4 3 2 33 33 H 1.08002 * 119.99840 * 174.47336 * 5 4 3 34 34 H 1.08994 * 109.46797 * 29.99599 * 9 8 6 35 35 H 1.08997 * 109.47052 * 149.99862 * 9 8 6 36 36 H 0.96995 * 120.00284 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.01521 * 359.95563 * 19 18 8 38 38 H 1.07996 * 119.99276 * 179.72402 * 20 19 18 39 39 H 1.08991 * 109.46802 * 299.99710 * 23 22 21 40 40 H 1.08997 * 109.47086 * 60.00189 * 23 22 21 41 41 H 1.08997 * 109.47025 * 60.00407 * 24 23 22 42 42 H 1.09005 * 109.46428 * 180.02562 * 24 23 22 43 43 H 1.08993 * 109.46992 * 299.99576 * 24 23 22 44 44 H 1.08001 * 119.99150 * 179.76678 * 25 21 20 45 45 H 1.07998 * 120.00415 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6374 1.1553 0.0006 5 6 4.3133 2.3205 0.1159 6 6 3.5873 3.5897 0.1183 7 8 2.3700 3.5946 0.1255 8 7 4.2659 4.7542 0.1126 9 6 5.7253 4.7510 -0.0160 10 6 6.3500 4.6844 1.3537 11 1 5.7229 4.6476 2.2321 12 6 7.7225 4.6693 1.4854 13 7 8.4863 4.7125 0.4157 14 14 8.4970 4.5859 3.1833 15 1 7.4281 4.5462 4.2134 16 1 9.3312 3.3619 3.2873 17 1 9.3472 5.7842 3.3988 18 6 3.5762 5.9669 0.2294 19 6 2.7364 6.1868 1.3133 20 6 2.0528 7.3813 1.4255 21 6 2.2124 8.3654 0.4608 22 8 1.5421 9.5431 0.5741 23 6 0.6954 9.7005 1.7144 24 6 0.0312 11.0782 1.6700 25 6 3.0515 8.1467 -0.6220 26 6 3.7318 6.9507 -0.7383 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.0469 -0.9353 0.0004 31 1 1.6341 2.0907 -0.0004 32 1 4.1774 0.2245 -0.0912 33 1 5.3895 2.3137 0.2062 34 1 6.0366 3.8848 -0.5999 35 1 6.0477 5.6629 -0.5185 36 1 9.4517 4.7015 0.5083 37 1 2.6145 5.4221 2.0662 38 1 1.3962 7.5507 2.2660 39 1 -0.0718 8.9264 1.7068 40 1 1.2904 9.6136 2.6235 41 1 -0.5637 11.1655 0.7609 42 1 -0.6143 11.1984 2.5401 43 1 0.7988 11.8519 1.6778 44 1 3.1724 8.9118 -1.3746 45 1 4.3846 6.7805 -1.5816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255756353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:18 Heat of formation + Delta-G solvation = -6.159838 kcal Electronic energy + Delta-G solvation = -25656.892916 eV Core-core repulsion = 22027.017564 eV Total energy + Delta-G solvation = -3629.875352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19625 -39.29290 -37.27223 -35.32270 -34.67291 -32.67209 -32.00690 -31.65385 -30.60804 -28.78862 -27.27969 -26.52130 -24.04321 -23.41374 -22.76788 -21.69708 -20.61026 -19.62174 -18.30210 -18.04728 -16.88642 -16.68385 -16.03630 -15.88458 -15.52438 -14.62574 -14.31909 -14.23472 -14.00036 -13.80464 -13.32418 -13.24420 -13.16753 -13.09429 -12.78470 -12.61908 -12.45563 -12.38998 -12.02723 -11.83345 -11.63418 -11.59392 -11.19682 -11.16159 -11.01601 -10.77624 -10.67139 -10.53590 -10.32531 -10.20689 -9.84330 -8.81877 -8.60542 -8.57678 -8.47720 -7.94417 -7.23766 -6.22359 -4.29972 1.18303 1.72153 1.82657 3.05827 3.19890 3.28663 3.32473 3.33531 3.80150 3.95110 4.19486 4.33294 4.84565 4.89120 5.10576 5.11920 5.13273 5.20477 5.23637 5.31888 5.36057 5.41157 5.67290 5.69467 5.72569 5.74541 5.76371 5.87007 5.90032 5.95213 5.98031 6.16394 6.26685 6.36289 6.46630 6.66029 6.74886 6.85509 6.90649 7.01974 7.05907 7.12666 7.27251 7.53433 7.69597 7.77312 7.98019 8.20059 8.73784 8.94312 9.37605 10.84039 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.007058 B = 0.004972 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.165373 B = 5629.769728 C = 8711.491713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.166 4.166 3 C -0.159 4.159 4 C -0.064 4.064 5 C -0.180 4.180 6 C 0.550 3.450 7 O -0.556 6.556 8 N -0.547 5.547 9 C 0.235 3.765 10 C -0.536 4.536 11 H 0.062 0.938 12 C 0.066 3.934 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.144 3.856 19 C -0.071 4.071 20 C -0.195 4.195 21 C 0.107 3.893 22 O -0.320 6.320 23 C 0.054 3.946 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.090 4.090 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.173 0.827 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.266 0.734 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.129 0.871 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 2.148 -0.009 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.184 4.184 3 C -0.176 4.176 4 C -0.084 4.084 5 C -0.200 4.200 6 C 0.344 3.656 7 O -0.439 6.439 8 N -0.272 5.272 9 C 0.117 3.883 10 C -0.575 4.575 11 H 0.081 0.919 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.052 3.948 19 C -0.091 4.091 20 C -0.214 4.214 21 C 0.062 3.938 22 O -0.235 6.235 23 C -0.021 4.021 24 C -0.208 4.208 25 C -0.158 4.158 26 C -0.110 4.110 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.147 0.853 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.308 2.309 -0.198 13.508 hybrid contribution 0.920 -0.301 1.238 1.572 sum -12.388 2.008 1.040 12.593 Atomic orbital electron populations 1.20776 0.93324 1.01509 1.02016 1.23543 0.95991 0.97462 1.01408 1.23564 0.94142 1.01478 0.98382 1.22515 0.94003 0.97074 0.94834 1.23322 1.01858 0.91523 1.03338 1.18479 0.86622 0.84664 0.75826 1.90402 1.14044 1.86803 1.52623 1.45893 1.09868 1.02647 1.68745 1.19654 0.71396 0.99194 0.98063 1.21476 0.91574 1.51929 0.92479 0.91938 1.24918 0.96969 0.94645 0.97150 1.69923 1.05008 1.49594 1.28329 0.86448 0.79313 0.77797 0.84016 1.19641 1.20754 1.20792 1.17514 0.95786 0.87475 0.94074 1.20895 0.95891 0.96131 0.96198 1.20976 1.04987 0.94825 1.00628 1.18852 0.94224 0.85118 0.95560 1.86030 1.57963 1.34202 1.45291 1.22705 0.92901 0.98515 0.87976 1.21762 1.00781 0.95458 1.02777 1.20140 0.99300 0.98218 0.98129 1.20933 0.99228 0.92811 0.98007 0.92605 0.91767 0.91776 0.88246 0.81068 0.86240 0.83500 0.93714 0.94047 0.92477 0.85981 0.85845 0.92242 0.92183 0.91667 0.90652 0.91616 0.85336 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 10.19 36.00 0.37 -1.00 16 2 C -0.17 -2.24 9.98 -36.00 -0.36 -2.60 16 3 C -0.16 -2.59 8.80 -38.01 -0.33 -2.93 16 4 C -0.06 -1.05 9.89 -37.41 -0.37 -1.42 16 5 C -0.18 -3.41 9.14 -37.46 -0.34 -3.75 16 6 C 0.55 11.54 7.33 -13.05 -0.10 11.45 16 7 O -0.56 -11.99 12.27 5.16 0.06 -11.93 16 8 N -0.55 -11.79 2.57 -116.32 -0.30 -12.09 16 9 C 0.24 5.55 4.68 -5.19 -0.02 5.52 16 10 C -0.54 -13.83 9.20 -34.44 -0.32 -14.15 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -24.14 13.29 55.43 0.74 -23.41 16 14 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.14 2.93 5.20 -83.66 -0.43 2.49 16 19 C -0.07 -1.36 8.90 -39.40 -0.35 -1.71 16 20 C -0.19 -3.20 9.03 -39.46 -0.36 -3.56 16 21 C 0.11 1.75 6.69 -39.22 -0.26 1.49 16 22 O -0.32 -4.66 10.14 -19.67 -0.20 -4.86 16 23 C 0.05 0.59 5.46 37.16 0.20 0.80 16 24 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 25 C -0.14 -2.29 9.98 -39.46 -0.39 -2.68 16 26 C -0.09 -1.65 9.30 -39.41 -0.37 -2.01 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.19 8.05 -52.49 -0.42 0.76 16 31 H 0.17 3.22 4.58 -55.15 -0.25 2.96 16 32 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.15 2.88 6.35 -52.49 -0.33 2.55 16 34 H 0.04 1.07 6.44 -51.93 -0.33 0.73 16 35 H 0.04 1.02 7.28 -51.93 -0.38 0.65 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.12 2.36 8.01 -52.48 -0.42 1.94 16 38 H 0.12 1.69 6.29 -52.49 -0.33 1.36 16 39 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 40 H 0.06 0.62 7.67 -51.93 -0.40 0.23 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.13 2.26 7.77 -52.49 -0.41 1.85 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -28.87 379.81 -8.75 -37.62 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.60 Total: 6.79 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.15 Total: -13.30 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.44 Total: -35.49 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.14 Total: -16.79 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.87 -8.75 -37.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255756353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.460 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds