Wall clock time and date at job start Tue Mar 31 2020 10:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33410 * 119.99979 * 2 1 4 4 C 1.46336 * 119.99884 * 179.97438 * 3 2 1 5 5 C 1.35193 * 120.00027 * 185.65509 * 4 3 2 6 6 C 1.46225 * 119.99816 * 354.46493 * 5 4 3 7 7 O 1.21735 * 120.00029 * 5.94026 * 6 5 4 8 8 N 1.34774 * 119.99729 * 185.93651 * 6 5 4 9 9 C 1.46505 * 120.00342 * 5.42786 * 8 6 5 10 10 C 1.50692 * 109.46879 * 269.99896 * 9 8 6 11 11 H 1.07998 * 120.00404 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00021 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99861 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00275 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46724 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47328 * 119.99540 * 14 12 10 17 17 H 1.48501 * 109.47096 * 239.99908 * 14 12 10 18 18 C 1.40005 * 119.99901 * 185.42244 * 8 6 5 19 19 C 1.38870 * 120.01332 * 55.83896 * 18 8 6 20 20 C 1.38088 * 119.98183 * 180.22871 * 19 18 8 21 21 C 1.38725 * 120.01358 * 359.51906 * 20 19 18 22 22 O 1.35977 * 119.98008 * 180.20619 * 21 20 19 23 23 C 1.42899 * 117.00020 * 0.25482 * 22 21 20 24 24 C 1.53006 * 109.46626 * 179.97438 * 23 22 21 25 25 C 1.38727 * 120.03581 * 0.45800 * 21 20 19 26 26 C 1.38081 * 120.01835 * 359.79621 * 25 21 20 27 27 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47401 * 300.00410 * 1 2 3 29 29 H 1.09001 * 109.46968 * 60.00545 * 1 2 3 30 30 H 1.07999 * 119.99763 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00257 * 359.97438 * 3 2 1 32 32 H 1.08005 * 119.99871 * 5.65851 * 4 3 2 33 33 H 1.08002 * 119.99840 * 174.47336 * 5 4 3 34 34 H 1.08994 * 109.46797 * 29.99599 * 9 8 6 35 35 H 1.08997 * 109.47052 * 149.99862 * 9 8 6 36 36 H 0.96995 * 120.00284 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.01521 * 359.95563 * 19 18 8 38 38 H 1.07996 * 119.99276 * 179.72402 * 20 19 18 39 39 H 1.08991 * 109.46802 * 299.99710 * 23 22 21 40 40 H 1.08997 * 109.47086 * 60.00189 * 23 22 21 41 41 H 1.08997 * 109.47025 * 60.00407 * 24 23 22 42 42 H 1.09005 * 109.46428 * 180.02562 * 24 23 22 43 43 H 1.08993 * 109.46992 * 299.99576 * 24 23 22 44 44 H 1.08001 * 119.99150 * 179.76678 * 25 21 20 45 45 H 1.07998 * 120.00415 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6374 1.1553 0.0006 5 6 4.3133 2.3205 0.1159 6 6 3.5873 3.5897 0.1183 7 8 2.3700 3.5946 0.1255 8 7 4.2659 4.7542 0.1126 9 6 5.7253 4.7510 -0.0160 10 6 6.3500 4.6844 1.3537 11 1 5.7229 4.6476 2.2321 12 6 7.7225 4.6693 1.4854 13 7 8.4863 4.7125 0.4157 14 14 8.4970 4.5859 3.1833 15 1 7.4281 4.5462 4.2134 16 1 9.3312 3.3619 3.2873 17 1 9.3472 5.7842 3.3988 18 6 3.5762 5.9669 0.2294 19 6 2.7364 6.1868 1.3133 20 6 2.0528 7.3813 1.4255 21 6 2.2124 8.3654 0.4608 22 8 1.5421 9.5431 0.5741 23 6 0.6954 9.7005 1.7144 24 6 0.0312 11.0782 1.6700 25 6 3.0515 8.1467 -0.6220 26 6 3.7318 6.9507 -0.7383 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.0469 -0.9353 0.0004 31 1 1.6341 2.0907 -0.0004 32 1 4.1774 0.2245 -0.0912 33 1 5.3895 2.3137 0.2062 34 1 6.0366 3.8848 -0.5999 35 1 6.0477 5.6629 -0.5185 36 1 9.4517 4.7015 0.5083 37 1 2.6145 5.4221 2.0662 38 1 1.3962 7.5507 2.2660 39 1 -0.0718 8.9264 1.7068 40 1 1.2904 9.6136 2.6235 41 1 -0.5637 11.1655 0.7609 42 1 -0.6143 11.1984 2.5401 43 1 0.7988 11.8519 1.6778 44 1 3.1724 8.9118 -1.3746 45 1 4.3846 6.7805 -1.5816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255756353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:17 Heat of formation + Delta-G solvation = -19.715309 kcal Electronic energy + Delta-G solvation = -25657.480726 eV Core-core repulsion = 22027.017564 eV Total energy + Delta-G solvation = -3630.463162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63286 -40.62513 -38.60741 -36.71442 -36.15940 -34.54183 -33.24338 -32.65716 -31.91857 -30.24210 -28.96553 -27.79545 -25.36901 -24.84791 -24.29271 -22.93048 -21.91570 -20.82305 -19.81258 -19.27357 -18.66202 -18.35965 -17.46509 -17.01138 -16.88393 -16.36238 -15.72270 -15.68617 -15.30527 -15.19786 -14.57836 -14.38371 -14.35728 -14.23460 -14.13325 -14.04449 -13.76265 -13.71359 -13.28923 -13.18729 -12.94088 -12.89324 -12.65613 -12.62252 -12.40309 -12.26057 -12.07244 -11.94959 -11.68878 -11.60147 -11.57746 -10.66342 -10.25567 -10.04903 -9.99308 -9.21806 -8.72582 -8.20522 -6.37049 -0.15362 0.33759 0.42666 1.38354 1.41161 1.51970 1.72514 2.18305 2.30022 2.41371 2.52075 2.79069 3.07699 3.78620 3.86345 3.91032 4.01344 4.08140 4.18163 4.28870 4.30271 4.37714 4.39973 4.54679 4.55667 4.64954 4.72323 4.81895 4.82415 4.89770 4.97086 5.00285 5.04856 5.08096 5.14585 5.20950 5.27650 5.32941 5.44962 5.57309 5.60434 5.67542 5.82231 5.98777 6.01433 6.09011 6.45669 6.55006 6.75970 7.29159 7.39886 8.83270 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.007058 B = 0.004972 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.165373 B = 5629.769728 C = 8711.491713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.025 4.025 5 C -0.228 4.228 6 C 0.544 3.456 7 O -0.570 6.570 8 N -0.553 5.553 9 C 0.253 3.747 10 C -0.543 4.543 11 H 0.048 0.952 12 C 0.025 3.975 13 N -0.918 5.918 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.278 1.278 18 C 0.108 3.892 19 C -0.087 4.087 20 C -0.189 4.189 21 C 0.113 3.887 22 O -0.325 6.325 23 C 0.041 3.959 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.100 4.100 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.132 0.868 34 H 0.037 0.963 35 H 0.024 0.976 36 H 0.269 0.731 37 H 0.109 0.891 38 H 0.152 0.848 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.153 0.847 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.515 1.512 0.852 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C -0.225 4.225 4 C -0.044 4.044 5 C -0.248 4.248 6 C 0.340 3.660 7 O -0.455 6.455 8 N -0.278 5.278 9 C 0.134 3.866 10 C -0.581 4.581 11 H 0.067 0.933 12 C -0.176 4.176 13 N -0.557 5.557 14 Si 0.782 3.218 15 H -0.198 1.198 16 H -0.198 1.198 17 H -0.204 1.204 18 C 0.016 3.984 19 C -0.107 4.107 20 C -0.208 4.208 21 C 0.068 3.932 22 O -0.240 6.240 23 C -0.033 4.033 24 C -0.203 4.203 25 C -0.157 4.157 26 C -0.120 4.120 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.170 0.830 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.171 0.829 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.900 1.686 0.665 15.010 hybrid contribution 1.155 -0.186 0.955 1.511 sum -13.745 1.500 1.621 13.921 Atomic orbital electron populations 1.20918 0.91816 1.03465 1.02130 1.23998 0.97260 0.97322 0.95165 1.23326 0.94114 1.01634 1.03392 1.22877 0.94277 0.97287 0.89985 1.23072 1.01106 0.91741 1.08913 1.18853 0.86697 0.85118 0.75364 1.90408 1.14375 1.87106 1.53576 1.45815 1.08951 1.03608 1.69377 1.19246 0.72926 0.97697 0.96763 1.21593 0.91858 1.51845 0.92853 0.93343 1.25608 0.97305 0.94273 1.00417 1.70006 1.05336 1.50316 1.30028 0.85525 0.78313 0.78082 0.79889 1.19845 1.19774 1.20366 1.17875 0.97209 0.87771 0.95561 1.20910 0.96837 0.97069 0.95894 1.21204 1.04516 0.93658 1.01463 1.18933 0.93696 0.85616 0.95002 1.86049 1.58078 1.32924 1.46955 1.23091 0.92801 1.00465 0.86990 1.21792 1.00862 0.93616 1.04016 1.20399 0.98579 0.97892 0.98807 1.21039 0.99821 0.93284 0.97870 0.89735 0.91713 0.91517 0.85479 0.83813 0.82799 0.84996 0.94548 0.95832 0.92175 0.87241 0.83046 0.91330 0.91516 0.91604 0.88145 0.91760 0.82943 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 10.19 71.24 0.73 -1.79 16 2 C -0.12 -2.86 9.98 24.59 0.25 -2.62 16 3 C -0.21 -6.63 8.80 23.28 0.20 -6.42 16 4 C -0.02 -0.80 9.89 23.68 0.23 -0.57 16 5 C -0.23 -9.06 9.14 23.64 0.22 -8.84 16 6 C 0.54 24.33 7.33 86.32 0.63 24.96 16 7 O -0.57 -26.06 12.27 -4.46 -0.05 -26.11 16 8 N -0.55 -25.49 2.57 -640.13 -1.64 -27.14 16 9 C 0.25 12.72 4.68 85.63 0.40 13.12 16 10 C -0.54 -29.27 9.20 25.60 0.24 -29.04 16 11 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 12 C 0.02 1.31 5.46 84.66 0.46 1.77 16 13 N -0.92 -50.93 13.29 21.45 0.28 -50.65 16 14 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 C 0.11 4.63 5.20 38.14 0.20 4.83 16 19 C -0.09 -3.47 8.90 22.39 0.20 -3.27 16 20 C -0.19 -6.19 9.03 22.35 0.20 -5.99 16 21 C 0.11 3.61 6.69 22.50 0.15 3.76 16 22 O -0.33 -8.94 10.14 -93.29 -0.95 -9.89 16 23 C 0.04 0.81 5.46 71.98 0.39 1.20 16 24 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 25 C -0.14 -4.54 9.98 22.35 0.22 -4.32 16 26 C -0.10 -3.84 9.30 22.38 0.21 -3.63 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.13 2.41 8.05 -2.91 -0.02 2.38 16 31 H 0.15 5.56 4.58 -45.05 -0.21 5.35 16 32 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.13 5.55 6.35 -2.91 -0.02 5.53 16 34 H 0.04 1.87 6.44 -2.39 -0.02 1.85 16 35 H 0.02 1.25 7.28 -2.39 -0.02 1.23 16 36 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 37 H 0.11 4.52 8.01 -2.91 -0.02 4.49 16 38 H 0.15 3.94 6.29 -2.91 -0.02 3.92 16 39 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 40 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 45 H 0.13 4.85 7.77 -2.91 -0.02 4.82 16 Total: -1.00 -64.81 379.81 6.12 -58.69 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.78 Total: 28.68 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 5.67 Total: -18.18 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.36 Total: -77.78 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.00 Total: -36.00 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.81 6.12 -58.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255756353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds