Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35741 * 117.00123 * 2 1 4 4 C 1.39026 * 119.88364 * 179.97438 * 3 2 1 5 5 C 1.37659 * 120.10921 * 179.97438 * 4 3 2 6 6 C 1.39969 * 119.88807 * 359.97438 * 5 4 3 7 7 C 1.46999 * 120.11166 * 179.97438 * 6 5 4 8 8 C 1.34979 * 119.99879 * 179.97438 * 7 6 5 9 9 C 1.46252 * 120.00286 * 179.97438 * 8 7 6 10 10 O 1.21723 * 119.99859 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00325 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99998 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46760 * 269.99260 * 12 11 9 14 14 H 1.08002 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47181 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46950 * 120.00201 * 17 15 13 20 20 H 1.48495 * 109.47228 * 239.99829 * 17 15 13 21 21 C 1.46497 * 119.99987 * 359.97438 * 11 9 8 22 22 C 1.53003 * 109.47329 * 270.00533 * 21 11 9 23 23 C 1.53001 * 117.51964 * 116.28255 * 22 21 11 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 21 25 25 C 1.39973 * 119.77218 * 0.26708 * 6 5 4 26 26 C 1.37659 * 119.88545 * 359.47363 * 25 6 5 27 27 H 1.09005 * 109.47054 * 60.00095 * 1 2 3 28 28 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47176 * 300.00147 * 1 2 3 30 30 H 1.08001 * 119.94368 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.05403 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.00438 * 359.97438 * 7 6 5 33 33 H 1.08006 * 120.00300 * 0.02562 * 8 7 6 34 34 H 1.08998 * 109.47531 * 29.99334 * 12 11 9 35 35 H 1.09000 * 109.47050 * 150.00101 * 12 11 9 36 36 H 0.97000 * 120.00206 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47381 * 150.00018 * 21 11 9 38 38 H 1.09005 * 109.46933 * 30.00197 * 21 11 9 39 39 H 1.09002 * 115.54973 * 330.58039 * 22 21 11 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 21 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 44 44 H 1.08000 * 120.05648 * 179.70502 * 25 6 5 45 45 H 1.07994 * 119.94367 * 180.23342 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4337 1.2794 0.0005 5 6 4.0635 2.5034 0.0000 6 6 3.3036 3.6788 -0.0016 7 6 3.9710 4.9886 -0.0016 8 6 3.2359 6.1206 -0.0037 9 6 3.8998 7.4238 -0.0032 10 8 5.1154 7.4875 -0.0003 11 7 3.1658 8.5541 -0.0047 12 6 3.8310 9.8595 -0.0047 13 6 4.0572 10.3079 1.4162 14 1 3.7378 9.6829 2.2370 15 6 4.6718 11.5161 1.6682 16 7 5.0602 12.2774 0.6686 17 14 4.9528 12.0716 3.4294 18 1 4.4287 11.0423 4.3627 19 1 6.4075 12.2571 3.6638 20 1 4.2463 13.3569 3.6617 21 6 1.7029 8.4775 -0.0076 22 6 1.1963 8.4505 -1.4510 23 6 0.4598 7.1935 -1.9184 24 6 -0.3176 8.4875 -1.6693 25 6 1.9059 3.6028 0.0030 26 6 1.2858 2.3738 -0.0019 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0192 0.3718 0.0014 31 1 5.1423 2.5567 0.0000 32 1 5.0495 5.0451 0.0001 33 1 2.1573 6.0642 -0.0050 34 1 4.7896 9.7788 -0.5172 35 1 3.2036 10.5869 -0.5197 36 1 5.4930 13.1272 0.8459 37 1 1.2924 9.3473 0.5054 38 1 1.3856 7.5698 0.5058 39 1 1.8225 8.9668 -2.1787 40 1 0.6015 6.8828 -2.9535 41 1 0.3364 6.3853 -1.1976 42 1 -0.9527 8.5307 -0.7844 43 1 -0.6874 9.0282 -2.5406 44 1 1.3150 4.5069 0.0065 45 1 0.2075 2.3141 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264009337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = -3.416203 kcal Electronic energy + Delta-G solvation = -25371.595225 eV Core-core repulsion = 21741.838846 eV Total energy + Delta-G solvation = -3629.756379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35249 -39.20485 -37.84067 -37.14759 -34.46018 -33.42408 -32.47305 -31.33022 -29.52987 -27.97920 -27.31865 -26.11765 -24.15646 -23.00719 -22.30782 -22.16334 -20.75763 -20.17771 -18.50184 -18.05002 -17.18450 -16.42940 -16.16072 -16.05086 -15.66475 -15.11210 -14.89593 -14.63900 -14.48161 -14.22153 -13.98976 -13.54450 -13.47453 -13.05836 -12.86132 -12.49722 -12.28660 -12.20594 -12.09721 -11.63544 -11.55977 -11.42494 -11.35588 -11.19779 -10.89929 -10.82900 -10.60073 -10.33229 -10.08936 -9.84119 -9.76267 -9.56513 -9.25507 -8.93001 -8.41538 -7.91605 -7.59124 -6.02079 -4.06502 0.65502 1.16096 2.16274 2.96470 3.31270 3.38859 3.43047 3.63057 3.81751 4.04787 4.10597 4.46978 4.48030 4.61358 4.72953 4.76063 4.79648 4.92900 5.03221 5.08041 5.10996 5.13256 5.18940 5.27082 5.32024 5.38016 5.55290 5.60725 5.68055 5.80607 5.85882 5.96591 6.00161 6.09097 6.11508 6.15550 6.18164 6.45960 6.49638 6.54585 6.72216 7.09981 7.13723 7.47737 7.57981 7.94843 8.26015 8.45485 8.93156 9.13328 9.58519 11.05989 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002956 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.484469 B = 9470.712684 C =10480.179116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.153 4.153 5 C -0.061 4.061 6 C -0.095 4.095 7 C -0.047 4.047 8 C -0.191 4.191 9 C 0.536 3.464 10 O -0.544 6.544 11 N -0.588 5.588 12 C 0.245 3.755 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.142 3.858 22 C -0.163 4.163 23 C -0.183 4.183 24 C -0.177 4.177 25 C -0.066 4.066 26 C -0.208 4.208 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.044 0.956 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.956 -21.035 -3.823 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.171 4.171 5 C -0.079 4.079 6 C -0.095 4.095 7 C -0.067 4.067 8 C -0.211 4.211 9 C 0.325 3.675 10 O -0.424 6.424 11 N -0.318 5.318 12 C 0.126 3.874 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.018 3.982 22 C -0.183 4.183 23 C -0.220 4.220 24 C -0.215 4.215 25 C -0.084 4.084 26 C -0.227 4.227 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.150 -20.967 -3.853 24.537 hybrid contribution -0.284 0.615 0.895 1.123 sum -12.434 -20.351 -2.957 24.032 Atomic orbital electron populations 1.23071 0.78323 1.03935 1.01525 1.86024 1.21470 1.27132 1.88510 1.19219 0.92395 0.84071 0.96138 1.20350 0.91222 0.98697 1.06870 1.21210 1.00105 0.90600 0.95992 1.19028 0.92985 0.93226 1.04291 1.22217 1.00349 0.89914 0.94190 1.23289 1.00196 0.93219 1.04441 1.18108 0.87103 0.84398 0.77875 1.90780 1.13631 1.87456 1.50560 1.48084 1.05150 1.08080 1.70509 1.19301 0.93627 0.76967 0.97506 1.21474 1.38929 1.03567 0.92303 0.92408 1.24934 0.95343 0.96475 0.97388 1.69942 1.40622 1.12212 1.30629 0.86452 0.78010 0.78347 0.84672 1.19794 1.20890 1.20995 1.21037 0.81686 1.02487 0.93028 1.22949 0.94354 1.01448 0.99541 1.23008 1.05380 0.91599 1.02024 1.22907 0.94363 1.01006 1.03185 1.21218 0.93875 0.97220 0.96060 1.21146 1.00040 0.92172 1.09324 0.92534 0.88262 0.92525 0.85006 0.84652 0.84774 0.85895 0.93807 0.94905 0.92806 0.89452 0.91457 0.87361 0.89146 0.89251 0.88781 0.88993 0.85301 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.05 10.49 -18.93 -0.20 -3.25 16 3 C 0.13 1.32 6.70 -39.00 -0.26 1.06 16 4 C -0.15 -1.57 9.97 -39.50 -0.39 -1.97 16 5 C -0.06 -0.66 9.79 -39.14 -0.38 -1.04 16 6 C -0.09 -1.16 5.87 -105.05 -0.62 -1.78 16 7 C -0.05 -0.69 9.45 -37.19 -0.35 -1.04 16 8 C -0.19 -3.07 8.60 -37.52 -0.32 -3.40 16 9 C 0.54 11.54 7.60 -13.04 -0.10 11.44 16 10 O -0.54 -14.07 15.81 5.17 0.08 -13.99 16 11 N -0.59 -12.63 2.46 -176.76 -0.43 -13.06 16 12 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 13 C -0.52 -14.97 9.39 -34.44 -0.32 -15.30 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.14 2.33 5.40 -4.04 -0.02 2.31 16 22 C -0.16 -2.30 6.01 -90.61 -0.54 -2.85 16 23 C -0.18 -2.03 9.89 -26.73 -0.26 -2.30 16 24 C -0.18 -1.97 10.25 -26.73 -0.27 -2.24 16 25 C -0.07 -0.72 9.40 -39.14 -0.37 -1.08 16 26 C -0.21 -2.03 9.01 -39.50 -0.36 -2.38 16 27 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.13 2.08 7.52 -52.49 -0.39 1.69 16 33 H 0.12 1.63 3.23 -52.48 -0.17 1.46 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 38 H 0.07 0.94 5.83 -51.93 -0.30 0.64 16 39 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.87 7.36 -51.93 -0.38 0.49 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.13 1.24 6.16 -52.49 -0.32 0.92 16 45 H 0.13 0.95 6.27 -52.49 -0.33 0.62 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -34.17 378.82 -9.26 -43.43 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.42 Total: 1.51 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.71 Total: -11.35 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.30 Total: -39.09 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.12 Total: -17.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.17 -9.26 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264009337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.017 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds