Wall clock time and date at job start Tue Mar 31 2020 11:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35741 * 117.00123 * 2 1 4 4 C 1.39026 * 119.88364 * 179.97438 * 3 2 1 5 5 C 1.37659 * 120.10921 * 179.97438 * 4 3 2 6 6 C 1.39969 * 119.88807 * 359.97438 * 5 4 3 7 7 C 1.46999 * 120.11166 * 179.97438 * 6 5 4 8 8 C 1.34979 * 119.99879 * 179.97438 * 7 6 5 9 9 C 1.46252 * 120.00286 * 179.97438 * 8 7 6 10 10 O 1.21723 * 119.99859 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00325 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99998 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46760 * 269.99260 * 12 11 9 14 14 H 1.08002 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47181 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46950 * 120.00201 * 17 15 13 20 20 H 1.48495 * 109.47228 * 239.99829 * 17 15 13 21 21 C 1.46497 * 119.99987 * 359.97438 * 11 9 8 22 22 C 1.53003 * 109.47329 * 270.00533 * 21 11 9 23 23 C 1.53001 * 117.51964 * 116.28255 * 22 21 11 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 21 25 25 C 1.39973 * 119.77218 * 0.26708 * 6 5 4 26 26 C 1.37659 * 119.88545 * 359.47363 * 25 6 5 27 27 H 1.09005 * 109.47054 * 60.00095 * 1 2 3 28 28 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47176 * 300.00147 * 1 2 3 30 30 H 1.08001 * 119.94368 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.05403 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.00438 * 359.97438 * 7 6 5 33 33 H 1.08006 * 120.00300 * 0.02562 * 8 7 6 34 34 H 1.08998 * 109.47531 * 29.99334 * 12 11 9 35 35 H 1.09000 * 109.47050 * 150.00101 * 12 11 9 36 36 H 0.97000 * 120.00206 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47381 * 150.00018 * 21 11 9 38 38 H 1.09005 * 109.46933 * 30.00197 * 21 11 9 39 39 H 1.09002 * 115.54973 * 330.58039 * 22 21 11 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 21 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 44 44 H 1.08000 * 120.05648 * 179.70502 * 25 6 5 45 45 H 1.07994 * 119.94367 * 180.23342 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4337 1.2794 0.0005 5 6 4.0635 2.5034 0.0000 6 6 3.3036 3.6788 -0.0016 7 6 3.9710 4.9886 -0.0016 8 6 3.2359 6.1206 -0.0037 9 6 3.8998 7.4238 -0.0032 10 8 5.1154 7.4875 -0.0003 11 7 3.1658 8.5541 -0.0047 12 6 3.8310 9.8595 -0.0047 13 6 4.0572 10.3079 1.4162 14 1 3.7378 9.6829 2.2370 15 6 4.6718 11.5161 1.6682 16 7 5.0602 12.2774 0.6686 17 14 4.9528 12.0716 3.4294 18 1 4.4287 11.0423 4.3627 19 1 6.4075 12.2571 3.6638 20 1 4.2463 13.3569 3.6617 21 6 1.7029 8.4775 -0.0076 22 6 1.1963 8.4505 -1.4510 23 6 0.4598 7.1935 -1.9184 24 6 -0.3176 8.4875 -1.6693 25 6 1.9059 3.6028 0.0030 26 6 1.2858 2.3738 -0.0019 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0192 0.3718 0.0014 31 1 5.1423 2.5567 0.0000 32 1 5.0495 5.0451 0.0001 33 1 2.1573 6.0642 -0.0050 34 1 4.7896 9.7788 -0.5172 35 1 3.2036 10.5869 -0.5197 36 1 5.4930 13.1272 0.8459 37 1 1.2924 9.3473 0.5054 38 1 1.3856 7.5698 0.5058 39 1 1.8225 8.9668 -2.1787 40 1 0.6015 6.8828 -2.9535 41 1 0.3364 6.3853 -1.1976 42 1 -0.9527 8.5307 -0.7844 43 1 -0.6874 9.0282 -2.5406 44 1 1.3150 4.5069 0.0065 45 1 0.2075 2.3141 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264009337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:58 Heat of formation + Delta-G solvation = -22.979010 kcal Electronic energy + Delta-G solvation = -25372.443532 eV Core-core repulsion = 21741.838846 eV Total energy + Delta-G solvation = -3630.604686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14554 -40.72498 -38.66043 -38.34531 -36.17269 -34.70295 -34.41485 -32.10537 -30.68710 -29.54525 -28.10973 -27.56091 -25.70392 -24.21804 -23.26824 -23.14384 -21.93896 -21.36988 -19.48099 -19.22899 -18.61968 -18.44111 -17.32403 -16.90160 -16.63738 -16.37822 -16.20494 -15.92825 -15.83617 -15.45383 -14.82306 -14.78707 -14.55070 -14.31951 -14.11397 -13.79862 -13.77885 -13.47331 -13.03672 -12.96119 -12.85386 -12.62624 -12.57215 -12.42181 -12.29333 -12.25375 -12.23314 -11.72300 -11.65861 -11.24604 -10.96628 -10.80631 -10.65554 -10.56278 -10.03005 -9.46942 -8.77394 -8.22514 -6.37942 -0.37058 0.39486 1.06203 1.35546 1.38248 1.50416 2.27369 2.36297 2.41581 2.47279 2.91697 2.98726 3.06286 3.60689 3.69644 3.90024 3.91968 4.04377 4.09249 4.13444 4.24881 4.26830 4.36482 4.41245 4.43968 4.49124 4.68075 4.74914 4.78293 4.82817 4.85254 4.96256 5.02130 5.07269 5.10711 5.18030 5.23292 5.30566 5.33729 5.34758 5.49277 5.57384 5.69402 5.72562 5.86000 6.05604 6.41913 6.69737 6.79708 7.27365 7.47788 8.84568 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002956 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.484469 B = 9470.712684 C =10480.179116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.130 3.870 4 C -0.165 4.165 5 C -0.059 4.059 6 C -0.123 4.123 7 C -0.016 4.016 8 C -0.211 4.211 9 C 0.527 3.473 10 O -0.607 6.607 11 N -0.594 5.594 12 C 0.262 3.738 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.142 3.858 22 C -0.195 4.195 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.061 4.061 26 C -0.209 4.209 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.157 0.843 34 H -0.005 1.005 35 H 0.022 0.978 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.145 0.855 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 -23.573 -2.856 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.084 3.916 4 C -0.183 4.183 5 C -0.077 4.077 6 C -0.123 4.123 7 C -0.036 4.036 8 C -0.231 4.231 9 C 0.319 3.681 10 O -0.491 6.491 11 N -0.322 5.322 12 C 0.141 3.859 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.192 1.192 21 C 0.020 3.980 22 C -0.215 4.215 23 C -0.199 4.199 24 C -0.196 4.196 25 C -0.078 4.078 26 C -0.227 4.227 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.135 0.865 33 H 0.174 0.826 34 H 0.013 0.987 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.163 0.837 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.320 -23.525 -2.896 28.223 hybrid contribution 0.646 1.189 0.527 1.452 sum -14.675 -22.336 -2.369 26.830 Atomic orbital electron populations 1.23395 0.76237 1.05708 1.02531 1.86023 1.23670 1.26754 1.88052 1.19458 0.92640 0.84806 0.94712 1.20556 0.91810 0.98913 1.07018 1.21375 1.00777 0.90522 0.95062 1.18932 0.93982 0.91964 1.07455 1.22305 0.99670 0.91070 0.90582 1.22951 1.01404 0.90170 1.08579 1.19001 0.86605 0.86112 0.76358 1.90730 1.16333 1.88443 1.53632 1.48052 1.07452 1.06372 1.70357 1.18718 0.91673 0.79440 0.96070 1.21717 1.39400 1.03941 0.92886 0.92905 1.25888 0.94758 0.96473 1.02129 1.70065 1.41082 1.12696 1.33038 0.85339 0.77901 0.78435 0.78959 1.19075 1.20725 1.19233 1.21261 0.78290 1.03420 0.95072 1.22651 0.96336 1.05170 0.97336 1.23146 1.02571 0.91311 1.02913 1.23029 0.91804 1.00691 1.04085 1.21423 0.93175 0.98429 0.94821 1.21414 1.01475 0.91293 1.08525 0.91411 0.86348 0.91510 0.83680 0.83721 0.86549 0.82591 0.98668 0.96020 0.92384 0.90715 0.88275 0.90445 0.88473 0.86930 0.87082 0.88223 0.83734 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.30 10.49 -90.65 -0.95 -6.25 16 3 C 0.13 2.30 6.70 22.65 0.15 2.46 16 4 C -0.16 -3.02 9.97 22.32 0.22 -2.80 16 5 C -0.06 -1.19 9.79 22.55 0.22 -0.97 16 6 C -0.12 -2.80 5.87 -20.14 -0.12 -2.92 16 7 C -0.02 -0.47 9.45 23.82 0.23 -0.25 16 8 C -0.21 -6.74 8.60 23.60 0.20 -6.54 16 9 C 0.53 23.85 7.60 86.32 0.66 24.51 16 10 O -0.61 -33.75 15.81 -4.42 -0.07 -33.82 16 11 N -0.59 -26.84 2.46 -831.35 -2.04 -28.88 16 12 C 0.26 14.85 5.16 85.63 0.44 15.30 16 13 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 14 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 17 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C 0.14 4.67 5.40 86.38 0.47 5.13 16 22 C -0.20 -5.44 6.01 -10.79 -0.06 -5.50 16 23 C -0.16 -3.12 9.89 30.59 0.30 -2.82 16 24 C -0.16 -3.12 10.25 30.60 0.31 -2.81 16 25 C -0.06 -1.12 9.40 22.55 0.21 -0.90 16 26 C -0.21 -3.25 9.01 22.32 0.20 -3.05 16 27 H 0.07 0.39 7.65 -2.38 -0.02 0.37 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.12 3.79 7.52 -2.91 -0.02 3.76 16 33 H 0.16 3.76 3.23 -2.91 -0.01 3.75 16 34 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 35 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 38 H 0.10 2.57 5.83 -2.38 -0.01 2.55 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.11 1.65 7.36 -2.39 -0.02 1.63 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.15 2.13 6.16 -2.91 -0.02 2.11 16 45 H 0.16 1.51 6.27 -2.91 -0.02 1.50 16 Total: -1.00 -79.82 378.82 5.49 -74.33 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.99 Total: 15.10 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.25 Total: -11.16 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.76 Total: -86.20 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.02 Total: -40.07 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -79.82 5.49 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264009337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.349 kcal (2) G-P(sol) polarization free energy of solvation -79.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds