Wall clock time and date at job start Tue Mar 31 2020 11:19:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35913 * 116.99987 * 2 1
4 4 C 1.38907 * 119.96792 * 0.02562 * 3 2 1
5 5 C 1.38285 * 120.28963 * 180.02562 * 4 3 2
6 6 C 1.37947 * 120.23119 * 359.97438 * 5 4 3
7 7 C 1.39830 * 119.93499 * 359.97438 * 6 5 4
8 8 C 1.47219 * 120.14117 * 180.02562 * 7 6 5
9 9 C 1.34813 * 119.99833 * 359.72266 * 8 7 6
10 10 C 1.46437 * 119.99658 * 180.27348 * 9 8 7
11 11 O 1.21693 * 120.00250 * 0.02562 * 10 9 8
12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 8
13 13 C 1.46490 * 120.00008 * 179.97438 * 12 10 9
14 14 C 1.50709 * 109.47144 * 90.00465 * 13 12 10
15 15 H 1.08002 * 119.99297 * 359.97438 * 14 13 12
16 16 C 1.37871 * 119.99935 * 180.02562 * 14 13 12
17 17 N 1.31520 * 119.99835 * 180.02562 * 16 14 13
18 18 Si 1.86797 * 120.00385 * 359.97438 * 16 14 13
19 19 H 1.48497 * 109.47231 * 90.00031 * 18 16 14
20 20 H 1.48502 * 109.46995 * 210.00421 * 18 16 14
21 21 H 1.48505 * 109.46935 * 330.00258 * 18 16 14
22 22 C 1.46506 * 119.99873 * 0.02562 * 12 10 9
23 23 C 1.52998 * 109.47316 * 89.99489 * 22 12 10
24 24 C 1.52998 * 117.49912 * 243.74549 * 23 22 12
25 25 C 1.52993 * 117.49859 * 175.08460 * 23 22 12
26 26 C 1.38377 * 119.97561 * 180.25767 * 3 2 1
27 27 H 1.09000 * 109.47469 * 299.99287 * 1 2 3
28 28 H 1.09004 * 109.47617 * 59.99243 * 1 2 3
29 29 H 1.09002 * 109.46937 * 179.97438 * 1 2 3
30 30 H 1.07993 * 119.85544 * 359.97438 * 4 3 2
31 31 H 1.07994 * 119.88696 * 179.97438 * 5 4 3
32 32 H 1.08001 * 120.03031 * 179.97438 * 6 5 4
33 33 H 1.08002 * 120.00317 * 180.02562 * 8 7 6
34 34 H 1.07992 * 119.99787 * 0.27520 * 9 8 7
35 35 H 1.09001 * 109.47399 * 210.00022 * 13 12 10
36 36 H 1.09005 * 109.47240 * 330.00526 * 13 12 10
37 37 H 0.96996 * 120.00256 * 179.97438 * 17 16 14
38 38 H 1.08999 * 109.46568 * 210.00089 * 22 12 10
39 39 H 1.09001 * 109.46919 * 329.99475 * 22 12 10
40 40 H 1.09006 * 115.54879 * 29.42000 * 23 22 12
41 41 H 1.08997 * 117.49902 * 359.97438 * 24 23 22
42 42 H 1.09002 * 117.49768 * 145.02316 * 24 23 22
43 43 H 1.09005 * 117.49852 * 214.98410 * 25 23 22
44 44 H 1.09005 * 117.50309 * 0.02562 * 25 23 22
45 45 H 1.08000 * 120.11580 * 0.02646 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 1.2888 2.3755 0.0005
5 6 1.9096 3.6112 0.0000
6 6 3.2865 3.6967 -0.0005
7 6 4.0580 2.5305 0.0000
8 6 5.5277 2.6164 0.0000
9 6 6.1324 3.8213 -0.0062
10 6 7.5943 3.9067 -0.0122
11 8 8.2632 2.8902 -0.0121
12 7 8.1988 5.1113 -0.0189
13 6 9.6612 5.1968 -0.0244
14 6 10.1577 5.2209 -1.4471
15 1 9.4541 5.1764 -2.2653
16 6 11.5100 5.2985 -1.7041
17 7 11.9432 5.3201 -2.9457
18 14 12.7269 5.3747 -0.2889
19 1 13.1307 3.9972 0.0914
20 1 13.9259 6.1441 -0.7080
21 1 12.0914 6.0433 0.8749
22 6 7.3934 6.3351 -0.0195
23 6 7.1192 6.7660 1.4227
24 6 5.6639 6.7680 1.8948
25 6 6.3870 8.0922 1.6366
26 6 3.4279 1.2828 -0.0054
27 1 -0.3634 0.5137 0.8900
28 1 -0.3634 0.5140 -0.8899
29 1 -0.3633 -1.0277 -0.0005
30 1 0.2105 2.3157 0.0005
31 1 1.3146 4.5124 0.0000
32 1 3.7680 4.6634 -0.0014
33 1 6.1214 1.7143 0.0000
34 1 5.5387 4.7234 -0.0066
35 1 9.9738 6.1084 0.4849
36 1 10.0778 4.3314 0.4912
37 1 12.8946 5.3751 -3.1266
38 1 7.9350 7.1260 -0.5384
39 1 6.4481 6.1476 -0.5287
40 1 7.8837 6.4902 2.1492
41 1 4.9018 6.4627 1.1778
42 1 5.4709 6.4939 2.9320
43 1 6.6695 8.6888 2.5041
44 1 6.1003 8.6576 0.7499
45 1 4.0175 0.3780 -0.0100
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000264020163.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:03
Heat of formation + Delta-G solvation = 1.961600 kcal
Electronic energy + Delta-G solvation = -25368.473439 eV
Core-core repulsion = 21738.950258 eV
Total energy + Delta-G solvation = -3629.523180 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.32755 -39.33244 -37.82108 -37.23114 -34.59894 -33.63901 -32.44238 -31.10440
-29.57013 -28.30589 -27.61960 -26.35893 -24.17966 -22.80782 -22.34081 -22.16132
-20.82973 -20.18566 -18.32016 -17.86653 -17.00395 -16.87516 -16.51073 -16.01334
-15.95340 -15.35418 -15.06634 -14.71562 -14.32581 -14.11533 -13.87832 -13.56322
-13.48441 -13.07930 -12.96511 -12.71630 -12.45340 -12.29972 -11.88308 -11.73226
-11.57811 -11.48783 -11.47469 -11.39386 -11.01714 -10.87391 -10.56073 -10.34908
-10.19491 -10.09098 -9.90572 -9.51242 -9.07507 -8.62293 -8.56723 -8.24107
-7.70010 -6.06526 -4.05205 0.53947 1.25136 2.10416 2.97599 3.30919
3.36792 3.38820 3.60887 3.70778 3.94383 4.01028 4.41586 4.52110
4.56303 4.75188 4.80924 4.81617 4.82305 4.96641 4.99697 5.05922
5.12589 5.16678 5.24835 5.29122 5.31198 5.47852 5.57943 5.63934
5.73206 5.79621 5.92330 6.01644 6.03677 6.07617 6.13198 6.21581
6.35080 6.39891 6.53256 6.65764 6.76495 6.97774 7.13653 7.35415
7.62873 8.25304 8.48788 8.94121 8.99838 9.53668 11.06878
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.016527 B = 0.002980 C = 0.002645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1693.817125 B = 9393.884519 C =10582.720082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.318 6.318
3 C 0.124 3.876
4 C -0.207 4.207
5 C -0.080 4.080
6 C -0.143 4.143
7 C -0.017 4.017
8 C -0.055 4.055
9 C -0.176 4.176
10 C 0.538 3.462
11 O -0.541 6.541
12 N -0.583 5.583
13 C 0.215 3.785
14 C -0.527 4.527
15 H 0.075 0.925
16 C 0.072 3.928
17 N -0.898 5.898
18 Si 0.876 3.124
19 H -0.274 1.274
20 H -0.285 1.285
21 H -0.266 1.266
22 C 0.141 3.859
23 C -0.167 4.167
24 C -0.182 4.182
25 C -0.176 4.176
26 C -0.134 4.134
27 H 0.055 0.945
28 H 0.055 0.945
29 H 0.099 0.901
30 H 0.127 0.873
31 H 0.127 0.873
32 H 0.128 0.872
33 H 0.137 0.863
34 H 0.128 0.872
35 H 0.031 0.969
36 H 0.037 0.963
37 H 0.264 0.736
38 H 0.090 0.910
39 H 0.071 0.929
40 H 0.107 0.893
41 H 0.091 0.909
42 H 0.091 0.909
43 H 0.092 0.908
44 H 0.095 0.905
45 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.410 -1.043 9.048 26.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.231 6.231
3 C 0.079 3.921
4 C -0.226 4.226
5 C -0.098 4.098
6 C -0.161 4.161
7 C -0.018 4.018
8 C -0.074 4.074
9 C -0.196 4.196
10 C 0.327 3.673
11 O -0.420 6.420
12 N -0.313 5.313
13 C 0.095 3.905
14 C -0.566 4.566
15 H 0.093 0.907
16 C -0.130 4.130
17 N -0.536 5.536
18 Si 0.703 3.297
19 H -0.199 1.199
20 H -0.211 1.211
21 H -0.190 1.190
22 C 0.017 3.983
23 C -0.186 4.186
24 C -0.219 4.219
25 C -0.214 4.214
26 C -0.153 4.153
27 H 0.073 0.927
28 H 0.073 0.927
29 H 0.117 0.883
30 H 0.144 0.856
31 H 0.145 0.855
32 H 0.146 0.854
33 H 0.155 0.845
34 H 0.145 0.855
35 H 0.049 0.951
36 H 0.055 0.945
37 H 0.074 0.926
38 H 0.109 0.891
39 H 0.090 0.910
40 H 0.125 0.875
41 H 0.110 0.890
42 H 0.109 0.891
43 H 0.110 0.890
44 H 0.114 0.886
45 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -23.759 -1.742 8.924 25.440
hybrid contribution 0.406 0.342 0.586 0.791
sum -23.354 -1.400 9.510 25.255
Atomic orbital electron populations
1.23046 0.78460 1.03917 1.01300 1.86087 1.21318 1.26899 1.88844
1.18882 0.92150 0.84200 0.96848 1.21302 0.99932 0.92412 1.08977
1.20845 0.94448 0.96962 0.97586 1.21342 0.93653 0.98134 1.03004
1.18838 0.92856 0.92338 0.97738 1.22260 0.91388 0.98971 0.94814
1.23326 0.95000 0.98441 1.02870 1.18141 0.87618 0.83822 0.77731
1.90781 1.66388 1.34599 1.50221 1.47758 1.08394 1.04256 1.70847
1.19685 0.75140 0.97279 0.98418 1.21324 0.93033 1.51039 0.91195
0.90719 1.24851 0.98110 0.94504 0.95538 1.69898 1.14757 1.50466
1.18492 0.86856 0.81147 0.78781 0.82944 1.19912 1.21096 1.19046
1.21087 0.95823 0.88287 0.93126 1.22940 0.95340 1.00947 0.99395
1.23037 0.95203 1.01597 1.02076 1.22925 1.04537 0.90643 1.03258
1.20608 0.91392 0.98085 1.05208 0.92686 0.92655 0.88265 0.85564
0.85548 0.85386 0.84504 0.85475 0.95098 0.94496 0.92580 0.89147
0.91036 0.87496 0.89036 0.89099 0.88986 0.88628 0.84627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.17 9.81 101.05 0.99 1.16 16
2 O -0.32 -3.29 10.49 -19.47 -0.20 -3.49 16
3 C 0.12 1.37 6.68 -39.28 -0.26 1.11 16
4 C -0.21 -1.93 9.04 -39.32 -0.36 -2.29 16
5 C -0.08 -0.74 10.02 -39.67 -0.40 -1.14 16
6 C -0.14 -1.54 9.41 -39.09 -0.37 -1.91 16
7 C -0.02 -0.22 5.87 -105.08 -0.62 -0.84 16
8 C -0.05 -0.80 9.46 -37.15 -0.35 -1.15 16
9 C -0.18 -2.76 8.61 -37.50 -0.32 -3.09 16
10 C 0.54 11.26 7.61 -12.96 -0.10 11.17 16
11 O -0.54 -13.59 15.81 5.20 0.08 -13.51 16
12 N -0.58 -12.07 2.46 -176.70 -0.43 -12.51 16
13 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16
14 C -0.53 -15.23 9.94 -34.44 -0.34 -15.58 16
15 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16
16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
17 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16
18 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16
19 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16
20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
21 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16
22 C 0.14 2.22 5.40 -4.04 -0.02 2.20 16
23 C -0.17 -2.20 6.01 -90.63 -0.54 -2.75 16
24 C -0.18 -1.90 9.89 -26.70 -0.26 -2.17 16
25 C -0.18 -1.84 10.25 -26.70 -0.27 -2.11 16
26 C -0.13 -1.62 9.73 -38.96 -0.38 -2.00 16
27 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16
28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16
29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.13 0.86 6.28 -52.49 -0.33 0.53 16
31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16
32 H 0.13 1.20 6.16 -52.49 -0.32 0.88 16
33 H 0.14 2.13 7.52 -52.49 -0.39 1.73 16
34 H 0.13 1.62 3.23 -52.49 -0.17 1.45 16
35 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16
36 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16
37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
38 H 0.09 1.49 8.07 -51.93 -0.42 1.08 16
39 H 0.07 0.97 5.83 -51.93 -0.30 0.67 16
40 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16
41 H 0.09 0.84 7.35 -51.93 -0.38 0.46 16
42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16
44 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16
45 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16
LS Contribution 375.27 15.07 5.66 5.66
Total: -1.00 -34.96 375.27 -8.91 -43.87
By element:
Atomic # 1 Polarization: 8.49 SS G_CDS: -6.39 Total: 2.10 kcal
Atomic # 6 Polarization: -8.35 SS G_CDS: -3.73 Total: -12.08 kcal
Atomic # 7 Polarization: -39.92 SS G_CDS: 0.34 Total: -39.58 kcal
Atomic # 8 Polarization: -16.88 SS G_CDS: -0.12 Total: -17.00 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -34.96 -8.91 -43.87 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264020163.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.830 kcal
(2) G-P(sol) polarization free energy of solvation -34.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.874 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds