Wall clock time and date at job start Tue Mar 31 2020 11:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35913 * 116.99987 * 2 1 4 4 C 1.38907 * 119.96792 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.28963 * 180.02562 * 4 3 2 6 6 C 1.37947 * 120.23119 * 359.97438 * 5 4 3 7 7 C 1.39830 * 119.93499 * 359.97438 * 6 5 4 8 8 C 1.47219 * 120.14117 * 180.02562 * 7 6 5 9 9 C 1.34813 * 119.99833 * 359.72266 * 8 7 6 10 10 C 1.46437 * 119.99658 * 180.27348 * 9 8 7 11 11 O 1.21693 * 120.00250 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.46490 * 120.00008 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47144 * 90.00465 * 13 12 10 15 15 H 1.08002 * 119.99297 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99935 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99835 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00385 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47231 * 90.00031 * 18 16 14 20 20 H 1.48502 * 109.46995 * 210.00421 * 18 16 14 21 21 H 1.48505 * 109.46935 * 330.00258 * 18 16 14 22 22 C 1.46506 * 119.99873 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.47316 * 89.99489 * 22 12 10 24 24 C 1.52998 * 117.49912 * 243.74549 * 23 22 12 25 25 C 1.52993 * 117.49859 * 175.08460 * 23 22 12 26 26 C 1.38377 * 119.97561 * 180.25767 * 3 2 1 27 27 H 1.09000 * 109.47469 * 299.99287 * 1 2 3 28 28 H 1.09004 * 109.47617 * 59.99243 * 1 2 3 29 29 H 1.09002 * 109.46937 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.85544 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.88696 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.03031 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.00317 * 180.02562 * 8 7 6 34 34 H 1.07992 * 119.99787 * 0.27520 * 9 8 7 35 35 H 1.09001 * 109.47399 * 210.00022 * 13 12 10 36 36 H 1.09005 * 109.47240 * 330.00526 * 13 12 10 37 37 H 0.96996 * 120.00256 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46568 * 210.00089 * 22 12 10 39 39 H 1.09001 * 109.46919 * 329.99475 * 22 12 10 40 40 H 1.09006 * 115.54879 * 29.42000 * 23 22 12 41 41 H 1.08997 * 117.49902 * 359.97438 * 24 23 22 42 42 H 1.09002 * 117.49768 * 145.02316 * 24 23 22 43 43 H 1.09005 * 117.49852 * 214.98410 * 25 23 22 44 44 H 1.09005 * 117.50309 * 0.02562 * 25 23 22 45 45 H 1.08000 * 120.11580 * 0.02646 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2888 2.3755 0.0005 5 6 1.9096 3.6112 0.0000 6 6 3.2865 3.6967 -0.0005 7 6 4.0580 2.5305 0.0000 8 6 5.5277 2.6164 0.0000 9 6 6.1324 3.8213 -0.0062 10 6 7.5943 3.9067 -0.0122 11 8 8.2632 2.8902 -0.0121 12 7 8.1988 5.1113 -0.0189 13 6 9.6612 5.1968 -0.0244 14 6 10.1577 5.2209 -1.4471 15 1 9.4541 5.1764 -2.2653 16 6 11.5100 5.2985 -1.7041 17 7 11.9432 5.3201 -2.9457 18 14 12.7269 5.3747 -0.2889 19 1 13.1307 3.9972 0.0914 20 1 13.9259 6.1441 -0.7080 21 1 12.0914 6.0433 0.8749 22 6 7.3934 6.3351 -0.0195 23 6 7.1192 6.7660 1.4227 24 6 5.6639 6.7680 1.8948 25 6 6.3870 8.0922 1.6366 26 6 3.4279 1.2828 -0.0054 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2105 2.3157 0.0005 31 1 1.3146 4.5124 0.0000 32 1 3.7680 4.6634 -0.0014 33 1 6.1214 1.7143 0.0000 34 1 5.5387 4.7234 -0.0066 35 1 9.9738 6.1084 0.4849 36 1 10.0778 4.3314 0.4912 37 1 12.8946 5.3751 -3.1266 38 1 7.9350 7.1260 -0.5384 39 1 6.4481 6.1476 -0.5287 40 1 7.8837 6.4902 2.1492 41 1 4.9018 6.4627 1.1778 42 1 5.4709 6.4939 2.9320 43 1 6.6695 8.6888 2.5041 44 1 6.1003 8.6576 0.7499 45 1 4.0175 0.3780 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264020163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:03 Heat of formation + Delta-G solvation = 1.961600 kcal Electronic energy + Delta-G solvation = -25368.473439 eV Core-core repulsion = 21738.950258 eV Total energy + Delta-G solvation = -3629.523180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.32755 -39.33244 -37.82108 -37.23114 -34.59894 -33.63901 -32.44238 -31.10440 -29.57013 -28.30589 -27.61960 -26.35893 -24.17966 -22.80782 -22.34081 -22.16132 -20.82973 -20.18566 -18.32016 -17.86653 -17.00395 -16.87516 -16.51073 -16.01334 -15.95340 -15.35418 -15.06634 -14.71562 -14.32581 -14.11533 -13.87832 -13.56322 -13.48441 -13.07930 -12.96511 -12.71630 -12.45340 -12.29972 -11.88308 -11.73226 -11.57811 -11.48783 -11.47469 -11.39386 -11.01714 -10.87391 -10.56073 -10.34908 -10.19491 -10.09098 -9.90572 -9.51242 -9.07507 -8.62293 -8.56723 -8.24107 -7.70010 -6.06526 -4.05205 0.53947 1.25136 2.10416 2.97599 3.30919 3.36792 3.38820 3.60887 3.70778 3.94383 4.01028 4.41586 4.52110 4.56303 4.75188 4.80924 4.81617 4.82305 4.96641 4.99697 5.05922 5.12589 5.16678 5.24835 5.29122 5.31198 5.47852 5.57943 5.63934 5.73206 5.79621 5.92330 6.01644 6.03677 6.07617 6.13198 6.21581 6.35080 6.39891 6.53256 6.65764 6.76495 6.97774 7.13653 7.35415 7.62873 8.25304 8.48788 8.94121 8.99838 9.53668 11.06878 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.002980 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.817125 B = 9393.884519 C =10582.720082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.207 4.207 5 C -0.080 4.080 6 C -0.143 4.143 7 C -0.017 4.017 8 C -0.055 4.055 9 C -0.176 4.176 10 C 0.538 3.462 11 O -0.541 6.541 12 N -0.583 5.583 13 C 0.215 3.785 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.141 3.859 23 C -0.167 4.167 24 C -0.182 4.182 25 C -0.176 4.176 26 C -0.134 4.134 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.410 -1.043 9.048 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.226 4.226 5 C -0.098 4.098 6 C -0.161 4.161 7 C -0.018 4.018 8 C -0.074 4.074 9 C -0.196 4.196 10 C 0.327 3.673 11 O -0.420 6.420 12 N -0.313 5.313 13 C 0.095 3.905 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.017 3.983 23 C -0.186 4.186 24 C -0.219 4.219 25 C -0.214 4.214 26 C -0.153 4.153 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.759 -1.742 8.924 25.440 hybrid contribution 0.406 0.342 0.586 0.791 sum -23.354 -1.400 9.510 25.255 Atomic orbital electron populations 1.23046 0.78460 1.03917 1.01300 1.86087 1.21318 1.26899 1.88844 1.18882 0.92150 0.84200 0.96848 1.21302 0.99932 0.92412 1.08977 1.20845 0.94448 0.96962 0.97586 1.21342 0.93653 0.98134 1.03004 1.18838 0.92856 0.92338 0.97738 1.22260 0.91388 0.98971 0.94814 1.23326 0.95000 0.98441 1.02870 1.18141 0.87618 0.83822 0.77731 1.90781 1.66388 1.34599 1.50221 1.47758 1.08394 1.04256 1.70847 1.19685 0.75140 0.97279 0.98418 1.21324 0.93033 1.51039 0.91195 0.90719 1.24851 0.98110 0.94504 0.95538 1.69898 1.14757 1.50466 1.18492 0.86856 0.81147 0.78781 0.82944 1.19912 1.21096 1.19046 1.21087 0.95823 0.88287 0.93126 1.22940 0.95340 1.00947 0.99395 1.23037 0.95203 1.01597 1.02076 1.22925 1.04537 0.90643 1.03258 1.20608 0.91392 0.98085 1.05208 0.92686 0.92655 0.88265 0.85564 0.85548 0.85386 0.84504 0.85475 0.95098 0.94496 0.92580 0.89147 0.91036 0.87496 0.89036 0.89099 0.88986 0.88628 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.29 10.49 -19.47 -0.20 -3.49 16 3 C 0.12 1.37 6.68 -39.28 -0.26 1.11 16 4 C -0.21 -1.93 9.04 -39.32 -0.36 -2.29 16 5 C -0.08 -0.74 10.02 -39.67 -0.40 -1.14 16 6 C -0.14 -1.54 9.41 -39.09 -0.37 -1.91 16 7 C -0.02 -0.22 5.87 -105.08 -0.62 -0.84 16 8 C -0.05 -0.80 9.46 -37.15 -0.35 -1.15 16 9 C -0.18 -2.76 8.61 -37.50 -0.32 -3.09 16 10 C 0.54 11.26 7.61 -12.96 -0.10 11.17 16 11 O -0.54 -13.59 15.81 5.20 0.08 -13.51 16 12 N -0.58 -12.07 2.46 -176.70 -0.43 -12.51 16 13 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 14 C -0.53 -15.23 9.94 -34.44 -0.34 -15.58 16 15 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 19 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 22 C 0.14 2.22 5.40 -4.04 -0.02 2.20 16 23 C -0.17 -2.20 6.01 -90.63 -0.54 -2.75 16 24 C -0.18 -1.90 9.89 -26.70 -0.26 -2.17 16 25 C -0.18 -1.84 10.25 -26.70 -0.27 -2.11 16 26 C -0.13 -1.62 9.73 -38.96 -0.38 -2.00 16 27 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 0.86 6.28 -52.49 -0.33 0.53 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.20 6.16 -52.49 -0.32 0.88 16 33 H 0.14 2.13 7.52 -52.49 -0.39 1.73 16 34 H 0.13 1.62 3.23 -52.49 -0.17 1.45 16 35 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 36 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.09 1.49 8.07 -51.93 -0.42 1.08 16 39 H 0.07 0.97 5.83 -51.93 -0.30 0.67 16 40 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 0.84 7.35 -51.93 -0.38 0.46 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -34.96 375.27 -8.91 -43.87 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.39 Total: 2.10 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.73 Total: -12.08 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.34 Total: -39.58 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.12 Total: -17.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.96 -8.91 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264020163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.830 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds