Wall clock time and date at job start Tue Mar 31 2020 11:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35913 * 116.99987 * 2 1 4 4 C 1.38907 * 119.96792 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.28963 * 180.02562 * 4 3 2 6 6 C 1.37947 * 120.23119 * 359.97438 * 5 4 3 7 7 C 1.39830 * 119.93499 * 359.97438 * 6 5 4 8 8 C 1.47219 * 120.14117 * 180.02562 * 7 6 5 9 9 C 1.34813 * 119.99833 * 359.72266 * 8 7 6 10 10 C 1.46437 * 119.99658 * 180.27348 * 9 8 7 11 11 O 1.21693 * 120.00250 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.46490 * 120.00008 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47144 * 90.00465 * 13 12 10 15 15 H 1.08002 * 119.99297 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99935 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99835 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00385 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47231 * 90.00031 * 18 16 14 20 20 H 1.48502 * 109.46995 * 210.00421 * 18 16 14 21 21 H 1.48505 * 109.46935 * 330.00258 * 18 16 14 22 22 C 1.46506 * 119.99873 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.47316 * 89.99489 * 22 12 10 24 24 C 1.52998 * 117.49912 * 243.74549 * 23 22 12 25 25 C 1.52993 * 117.49859 * 175.08460 * 23 22 12 26 26 C 1.38377 * 119.97561 * 180.25767 * 3 2 1 27 27 H 1.09000 * 109.47469 * 299.99287 * 1 2 3 28 28 H 1.09004 * 109.47617 * 59.99243 * 1 2 3 29 29 H 1.09002 * 109.46937 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.85544 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.88696 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.03031 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.00317 * 180.02562 * 8 7 6 34 34 H 1.07992 * 119.99787 * 0.27520 * 9 8 7 35 35 H 1.09001 * 109.47399 * 210.00022 * 13 12 10 36 36 H 1.09005 * 109.47240 * 330.00526 * 13 12 10 37 37 H 0.96996 * 120.00256 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46568 * 210.00089 * 22 12 10 39 39 H 1.09001 * 109.46919 * 329.99475 * 22 12 10 40 40 H 1.09006 * 115.54879 * 29.42000 * 23 22 12 41 41 H 1.08997 * 117.49902 * 359.97438 * 24 23 22 42 42 H 1.09002 * 117.49768 * 145.02316 * 24 23 22 43 43 H 1.09005 * 117.49852 * 214.98410 * 25 23 22 44 44 H 1.09005 * 117.50309 * 0.02562 * 25 23 22 45 45 H 1.08000 * 120.11580 * 0.02646 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2888 2.3755 0.0005 5 6 1.9096 3.6112 0.0000 6 6 3.2865 3.6967 -0.0005 7 6 4.0580 2.5305 0.0000 8 6 5.5277 2.6164 0.0000 9 6 6.1324 3.8213 -0.0062 10 6 7.5943 3.9067 -0.0122 11 8 8.2632 2.8902 -0.0121 12 7 8.1988 5.1113 -0.0189 13 6 9.6612 5.1968 -0.0244 14 6 10.1577 5.2209 -1.4471 15 1 9.4541 5.1764 -2.2653 16 6 11.5100 5.2985 -1.7041 17 7 11.9432 5.3201 -2.9457 18 14 12.7269 5.3747 -0.2889 19 1 13.1307 3.9972 0.0914 20 1 13.9259 6.1441 -0.7080 21 1 12.0914 6.0433 0.8749 22 6 7.3934 6.3351 -0.0195 23 6 7.1192 6.7660 1.4227 24 6 5.6639 6.7680 1.8948 25 6 6.3870 8.0922 1.6366 26 6 3.4279 1.2828 -0.0054 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2105 2.3157 0.0005 31 1 1.3146 4.5124 0.0000 32 1 3.7680 4.6634 -0.0014 33 1 6.1214 1.7143 0.0000 34 1 5.5387 4.7234 -0.0066 35 1 9.9738 6.1084 0.4849 36 1 10.0778 4.3314 0.4912 37 1 12.8946 5.3751 -3.1266 38 1 7.9350 7.1260 -0.5384 39 1 6.4481 6.1476 -0.5287 40 1 7.8837 6.4902 2.1492 41 1 4.9018 6.4627 1.1778 42 1 5.4709 6.4939 2.9320 43 1 6.6695 8.6888 2.5041 44 1 6.1003 8.6576 0.7499 45 1 4.0175 0.3780 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264020163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:02 Heat of formation + Delta-G solvation = -19.169249 kcal Electronic energy + Delta-G solvation = -25369.389741 eV Core-core repulsion = 21738.950258 eV Total energy + Delta-G solvation = -3630.439483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16123 -40.78723 -38.64043 -38.36052 -36.21731 -34.80736 -34.52458 -31.94423 -30.92145 -29.79888 -28.18644 -27.73434 -25.67142 -23.74859 -23.55503 -23.11899 -21.94891 -21.31060 -19.62256 -19.08830 -18.90962 -18.20133 -17.34537 -17.15786 -16.63768 -16.62518 -16.32680 -16.01782 -15.78827 -15.28718 -14.93365 -14.80750 -14.58033 -14.45665 -14.15961 -13.90583 -13.81427 -13.61276 -13.23556 -13.01771 -12.77969 -12.54880 -12.46854 -12.36811 -12.22989 -12.20866 -12.03655 -11.78544 -11.76229 -11.23248 -11.16697 -11.00104 -10.83784 -10.61888 -9.60852 -9.38460 -9.07060 -8.34787 -6.39815 -0.48181 0.46653 1.01304 1.31232 1.35615 1.44003 2.19756 2.30084 2.36559 2.40020 2.89724 2.98757 3.00252 3.52482 3.77495 3.87547 3.96435 4.00810 4.05284 4.16988 4.20837 4.28402 4.35034 4.38456 4.42601 4.52814 4.56104 4.71017 4.73835 4.76034 4.82821 4.87941 4.93563 4.93833 5.08962 5.12030 5.24007 5.32413 5.34959 5.37069 5.44410 5.45538 5.62091 5.64713 5.76697 6.23122 6.44285 6.61007 6.67033 7.19778 7.37443 8.82228 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.002980 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.817125 B = 9393.884519 C =10582.720082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.113 3.887 4 C -0.196 4.196 5 C -0.076 4.076 6 C -0.142 4.142 7 C -0.040 4.040 8 C -0.031 4.031 9 C -0.190 4.190 10 C 0.528 3.472 11 O -0.601 6.601 12 N -0.589 5.589 13 C 0.225 3.775 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.947 3.053 19 H -0.277 1.277 20 H -0.272 1.272 21 H -0.239 1.239 22 C 0.139 3.861 23 C -0.193 4.193 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.162 0.838 35 H 0.050 0.950 36 H 0.017 0.983 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.889 0.724 10.943 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.067 3.933 4 C -0.215 4.215 5 C -0.094 4.094 6 C -0.160 4.160 7 C -0.040 4.040 8 C -0.052 4.052 9 C -0.210 4.210 10 C 0.320 3.680 11 O -0.485 6.485 12 N -0.317 5.317 13 C 0.103 3.897 14 C -0.574 4.574 15 H 0.047 0.953 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.770 3.230 19 H -0.203 1.203 20 H -0.197 1.197 21 H -0.162 1.162 22 C 0.016 3.984 23 C -0.212 4.212 24 C -0.202 4.202 25 C -0.197 4.197 26 C -0.171 4.171 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.134 0.866 34 H 0.179 0.821 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -27.294 0.070 10.831 29.364 hybrid contribution 1.263 -0.325 -0.088 1.307 sum -26.030 -0.255 10.742 28.161 Atomic orbital electron populations 1.23364 0.76216 1.05565 1.02502 1.86064 1.23702 1.26869 1.88796 1.19004 0.91881 0.85300 0.97072 1.21709 1.01443 0.91725 1.06609 1.21261 0.93946 0.98237 0.95961 1.21594 0.94511 0.97873 1.02015 1.18706 0.91285 0.93551 1.00470 1.22322 0.92996 0.97889 0.91944 1.23055 0.91665 1.00120 1.06160 1.18996 0.89770 0.82951 0.76321 1.90733 1.68105 1.36437 1.53185 1.47823 1.07270 1.06176 1.70476 1.19322 0.77992 0.96970 0.95408 1.21533 0.92728 1.50862 0.92237 0.95293 1.25838 1.00320 0.93893 0.98589 1.70047 1.15534 1.51801 1.21059 0.85726 0.78519 0.78887 0.79896 1.20254 1.19745 1.16222 1.21317 0.95812 0.85741 0.95480 1.22655 0.97158 1.04394 0.97009 1.23177 0.93222 1.00833 1.02960 1.23039 1.02543 0.90054 1.04063 1.20684 0.92512 0.97861 1.06027 0.91289 0.91457 0.86664 0.82584 0.81993 0.83749 0.86641 0.82059 0.93238 0.96482 0.92222 0.90523 0.88561 0.89418 0.87135 0.88251 0.87966 0.87420 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.54 10.49 -92.57 -0.97 -7.51 16 3 C 0.11 2.29 6.68 22.46 0.15 2.44 16 4 C -0.20 -2.91 9.04 22.44 0.20 -2.71 16 5 C -0.08 -1.06 10.02 22.21 0.22 -0.84 16 6 C -0.14 -2.59 9.41 22.59 0.21 -2.38 16 7 C -0.04 -0.96 5.87 -20.16 -0.12 -1.08 16 8 C -0.03 -0.94 9.46 23.84 0.23 -0.72 16 9 C -0.19 -5.98 8.61 23.62 0.20 -5.78 16 10 C 0.53 23.09 7.61 86.38 0.66 23.75 16 11 O -0.60 -32.28 15.81 -4.33 -0.07 -32.35 16 12 N -0.59 -25.17 2.46 -831.16 -2.04 -27.21 16 13 C 0.23 11.44 4.23 85.64 0.36 11.80 16 14 C -0.54 -32.42 9.94 25.60 0.25 -32.17 16 15 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 16 C 0.01 0.70 5.47 84.65 0.46 1.17 16 17 N -0.94 -60.80 13.96 21.45 0.30 -60.50 16 18 Si 0.95 45.59 27.47 68.60 1.88 47.47 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 22 C 0.14 4.32 5.40 86.38 0.47 4.78 16 23 C -0.19 -4.77 6.01 -10.80 -0.06 -4.84 16 24 C -0.17 -2.85 9.89 30.62 0.30 -2.55 16 25 C -0.16 -2.81 10.25 30.62 0.31 -2.50 16 26 C -0.15 -3.65 9.73 22.67 0.22 -3.43 16 27 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.07 0.46 7.66 -2.38 -0.02 0.45 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.16 1.34 6.28 -2.91 -0.02 1.32 16 31 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.14 2.08 6.16 -2.91 -0.02 2.07 16 33 H 0.12 3.91 7.52 -2.91 -0.02 3.89 16 34 H 0.16 3.77 3.23 -2.91 -0.01 3.76 16 35 H 0.05 2.31 7.13 -2.39 -0.02 2.30 16 36 H 0.02 0.93 6.85 -2.38 -0.02 0.92 16 37 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 38 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 39 H 0.10 2.44 5.83 -2.39 -0.01 2.43 16 40 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 41 H 0.11 1.49 7.35 -2.39 -0.02 1.47 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -82.43 375.27 5.23 -77.20 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.94 Total: 16.68 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.19 Total: -13.77 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.74 Total: -87.72 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.04 Total: -39.86 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -82.43 5.23 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264020163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.032 kcal (2) G-P(sol) polarization free energy of solvation -82.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds