Wall clock time and date at job start Tue Mar 31 2020 10:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21249 * 120.00220 * 2 1 4 4 C 1.47171 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39850 * 120.17258 * 179.97438 * 4 2 1 6 6 C 1.37881 * 119.82840 * 180.02562 * 5 4 2 7 7 C 1.38409 * 120.17187 * 0.02562 * 6 5 4 8 8 C 1.50690 * 119.82715 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47185 * 90.00122 * 8 7 6 10 10 O 1.21281 * 119.99699 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46877 * 269.72057 * 12 11 9 14 14 H 1.08005 * 119.99817 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99848 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00321 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46855 * 90.00279 * 17 15 13 19 19 H 1.48499 * 109.47326 * 210.00609 * 17 15 13 20 20 H 1.48497 * 109.46885 * 330.00481 * 17 15 13 21 21 C 1.46499 * 120.00036 * 359.72107 * 11 9 8 22 22 C 1.53001 * 109.47147 * 270.27655 * 21 11 9 23 23 C 1.53001 * 117.50182 * 243.62132 * 22 21 11 24 24 C 1.52999 * 60.00014 * 252.51157 * 23 22 21 25 25 C 1.38400 * 120.34541 * 0.23252 * 7 6 5 26 26 C 1.37891 * 120.17408 * 359.49052 * 25 7 6 27 27 H 1.08999 * 109.46790 * 239.99884 * 1 2 3 28 28 H 1.09000 * 109.46655 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47588 * 119.99166 * 1 2 3 30 30 H 1.08008 * 120.08300 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.91842 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47343 * 330.00389 * 8 7 6 33 33 H 1.08998 * 109.47656 * 210.00246 * 8 7 6 34 34 H 1.09000 * 109.46803 * 29.71536 * 12 11 9 35 35 H 1.09000 * 109.47214 * 149.72329 * 12 11 9 36 36 H 0.96998 * 119.99944 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.47173 * 30.28203 * 21 11 9 38 38 H 1.09005 * 109.47077 * 150.28374 * 21 11 9 39 39 H 1.08993 * 115.54979 * 29.33116 * 22 21 11 40 40 H 1.09004 * 117.49483 * 0.02562 * 23 22 21 41 41 H 1.08994 * 117.50176 * 145.01848 * 23 22 21 42 42 H 1.08995 * 117.49628 * 252.50731 * 24 23 22 43 43 H 1.08999 * 117.49412 * 107.49208 * 24 23 22 44 44 H 1.07999 * 119.91473 * 179.72376 * 25 7 6 45 45 H 1.08002 * 120.08775 * 180.23111 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2746 -0.0006 5 6 3.6413 -1.2789 -0.0011 6 6 4.3234 -2.4771 -0.0022 7 6 3.6277 -3.6736 -0.0032 8 6 4.3811 -4.9787 -0.0050 9 6 4.6328 -5.4154 1.4153 10 8 4.2395 -4.7336 2.3380 11 7 5.2958 -6.5629 1.6600 12 6 5.5400 -6.9877 3.0407 13 6 6.8571 -6.4280 3.5130 14 1 7.4525 -5.8166 2.8510 15 6 7.3015 -6.6954 4.7904 16 7 6.5762 -7.4395 5.5967 17 14 8.9345 -6.0023 5.3756 18 1 8.7130 -4.6725 5.9982 19 1 9.5336 -6.9232 6.3747 20 1 9.8549 -5.8602 4.2189 21 6 5.7665 -7.3889 0.5454 22 6 4.6781 -8.3925 0.1592 23 6 4.9927 -9.8793 0.3371 24 6 4.9316 -9.2728 -1.0662 25 6 2.2438 -3.6777 -0.0081 26 6 1.5471 -2.4878 -0.0013 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 4.1855 -0.3459 -0.0015 31 1 5.4034 -2.4821 -0.0030 32 1 5.3334 -4.8478 -0.5190 33 1 3.7919 -5.7378 -0.5195 34 1 4.7383 -6.6198 3.6811 35 1 5.5707 -8.0763 3.0859 36 1 6.8890 -7.6280 6.4953 37 1 5.9927 -6.7513 -0.3091 38 1 6.6660 -7.9263 0.8460 39 1 3.6537 -8.0690 0.3433 40 1 5.9750 -10.1423 0.7298 41 1 4.1752 -10.5341 0.6385 42 1 4.0739 -9.5288 -1.6881 43 1 5.8738 -9.1371 -1.5972 44 1 1.7079 -4.6154 -0.0134 45 1 0.4671 -2.4926 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264061077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:11 Heat of formation + Delta-G solvation = -28.799022 kcal Electronic energy + Delta-G solvation = -25559.446883 eV Core-core repulsion = 21928.589823 eV Total energy + Delta-G solvation = -3630.857061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.16289 -39.30841 -38.11551 -37.11954 -34.43376 -33.11037 -32.49091 -31.30037 -30.16285 -28.43620 -27.21704 -25.88741 -23.44119 -22.58181 -22.24535 -22.05827 -20.73587 -19.84205 -18.50168 -17.06703 -16.54441 -16.42863 -15.93953 -15.83215 -15.10051 -15.05945 -14.90730 -14.66563 -14.31280 -14.23017 -13.81251 -13.62867 -13.43098 -12.88806 -12.47295 -12.45071 -12.40441 -12.36366 -12.07291 -11.78650 -11.60501 -11.40516 -11.38827 -11.22282 -11.00047 -10.90348 -10.64471 -10.32504 -10.14844 -9.86613 -9.75983 -9.63749 -9.11732 -8.95779 -8.62572 -8.44153 -7.71166 -6.05518 -4.10239 0.62980 1.42472 2.33911 3.30245 3.33810 3.36800 3.40106 3.66037 3.85937 3.95785 4.08574 4.44047 4.69086 4.74401 4.85414 4.91638 4.93863 5.02517 5.05496 5.14218 5.18003 5.28390 5.33433 5.34127 5.38930 5.56625 5.58054 5.60496 5.69711 5.71263 5.77891 5.91784 5.97705 6.01999 6.03743 6.22753 6.24635 6.38681 6.41821 6.58251 6.88791 7.06390 7.41109 7.43090 7.51944 7.90835 8.22152 8.37752 8.88193 9.05586 9.54933 11.02530 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.003577 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.666423 B = 7826.436534 C = 9686.275414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.465 6.465 4 C -0.184 4.184 5 C -0.058 4.058 6 C -0.118 4.118 7 C -0.017 4.017 8 C -0.113 4.113 9 C 0.508 3.492 10 O -0.532 6.532 11 N -0.594 5.594 12 C 0.248 3.752 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.141 3.859 22 C -0.167 4.167 23 C -0.174 4.174 24 C -0.181 4.181 25 C -0.121 4.121 26 C -0.070 4.070 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 2.668 -16.946 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.276 3.724 3 O -0.341 6.341 4 C -0.185 4.185 5 C -0.076 4.076 6 C -0.136 4.136 7 C -0.018 4.018 8 C -0.153 4.153 9 C 0.294 3.706 10 O -0.409 6.409 11 N -0.325 5.325 12 C 0.129 3.871 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.016 3.984 22 C -0.187 4.187 23 C -0.211 4.211 24 C -0.219 4.219 25 C -0.139 4.139 26 C -0.089 4.089 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.489 3.495 -16.228 19.121 hybrid contribution 0.917 0.007 0.501 1.045 sum -8.573 3.502 -15.728 18.251 Atomic orbital electron populations 1.22245 0.93950 1.04926 1.04565 1.22513 0.91602 0.87681 0.70604 1.90521 1.72264 1.34424 1.36933 1.20411 0.94640 0.94545 1.08938 1.21331 0.93126 0.98471 0.94646 1.21015 1.00330 0.91585 1.00718 1.19702 0.93705 0.94242 0.94123 1.20907 1.01713 0.95335 0.97313 1.20087 0.79068 0.81656 0.89814 1.90711 1.51129 1.53048 1.45969 1.48198 1.54466 1.20890 1.08925 1.19267 0.97107 0.95268 0.75417 1.21428 1.04595 1.31951 0.98566 0.92530 1.24924 0.97575 0.95121 0.96423 1.69934 1.37929 1.37846 1.07590 0.86525 0.83509 0.78999 0.78544 1.20550 1.21146 1.19936 1.21043 0.95536 0.92338 0.89447 1.22896 1.00822 0.92937 1.02036 1.22998 1.03290 0.95829 0.98977 1.22925 1.02925 1.05026 0.91008 1.20949 0.93548 0.98199 1.01239 1.21316 0.99717 0.91391 0.96442 0.88749 0.89896 0.88895 0.85146 0.85445 0.88233 0.88211 0.93999 0.94886 0.92737 0.91166 0.89737 0.88000 0.88428 0.89163 0.89164 0.88824 0.85564 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 8.93 36.01 0.32 -1.19 16 2 C 0.40 4.74 7.23 -30.68 -0.22 4.52 16 3 O -0.46 -7.09 17.08 5.58 0.10 -6.99 16 4 C -0.18 -2.34 5.87 -105.06 -0.62 -2.96 16 5 C -0.06 -0.79 9.60 -39.11 -0.38 -1.17 16 6 C -0.12 -1.67 9.68 -39.65 -0.38 -2.05 16 7 C -0.02 -0.24 4.38 -104.50 -0.46 -0.70 16 8 C -0.11 -1.54 4.37 -29.04 -0.13 -1.67 16 9 C 0.51 9.97 7.67 -10.98 -0.08 9.89 16 10 O -0.53 -13.05 15.61 5.56 0.09 -12.96 16 11 N -0.59 -11.89 2.46 -175.05 -0.43 -12.32 16 12 C 0.25 6.34 5.17 -5.19 -0.03 6.31 16 13 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.14 2.13 5.49 -4.04 -0.02 2.10 16 22 C -0.17 -2.16 5.92 -90.62 -0.54 -2.70 16 23 C -0.17 -2.13 10.18 -26.73 -0.27 -2.40 16 24 C -0.18 -1.84 10.25 -26.73 -0.27 -2.11 16 25 C -0.12 -1.51 9.67 -39.65 -0.38 -1.90 16 26 C -0.07 -0.79 9.47 -39.11 -0.37 -1.16 16 27 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.13 1.73 7.65 -52.48 -0.40 1.32 16 31 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.10 1.17 7.35 -51.93 -0.38 0.79 16 33 H 0.10 1.10 7.95 -51.93 -0.41 0.69 16 34 H 0.04 1.22 7.41 -51.93 -0.38 0.84 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 0.86 6.45 -51.93 -0.33 0.53 16 38 H 0.08 1.37 7.81 -51.93 -0.41 0.96 16 39 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.10 1.25 8.03 -51.93 -0.42 0.83 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.13 1.00 7.05 -52.49 -0.37 0.63 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -34.84 384.89 -9.85 -44.69 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.87 Total: 1.24 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -4.25 Total: -10.56 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.31 Total: -37.99 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.18 Total: -19.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.84 -9.85 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264061077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.896 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds