Wall clock time and date at job start Tue Mar 31 2020 10:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21249 * 120.00220 * 2 1 4 4 C 1.47171 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39850 * 120.17258 * 179.97438 * 4 2 1 6 6 C 1.37881 * 119.82840 * 180.02562 * 5 4 2 7 7 C 1.38409 * 120.17187 * 0.02562 * 6 5 4 8 8 C 1.50690 * 119.82715 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47185 * 90.00122 * 8 7 6 10 10 O 1.21281 * 119.99699 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46877 * 269.72057 * 12 11 9 14 14 H 1.08005 * 119.99817 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99848 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00321 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46855 * 90.00279 * 17 15 13 19 19 H 1.48499 * 109.47326 * 210.00609 * 17 15 13 20 20 H 1.48497 * 109.46885 * 330.00481 * 17 15 13 21 21 C 1.46499 * 120.00036 * 359.72107 * 11 9 8 22 22 C 1.53001 * 109.47147 * 270.27655 * 21 11 9 23 23 C 1.53001 * 117.50182 * 243.62132 * 22 21 11 24 24 C 1.52999 * 60.00014 * 252.51157 * 23 22 21 25 25 C 1.38400 * 120.34541 * 0.23252 * 7 6 5 26 26 C 1.37891 * 120.17408 * 359.49052 * 25 7 6 27 27 H 1.08999 * 109.46790 * 239.99884 * 1 2 3 28 28 H 1.09000 * 109.46655 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47588 * 119.99166 * 1 2 3 30 30 H 1.08008 * 120.08300 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.91842 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47343 * 330.00389 * 8 7 6 33 33 H 1.08998 * 109.47656 * 210.00246 * 8 7 6 34 34 H 1.09000 * 109.46803 * 29.71536 * 12 11 9 35 35 H 1.09000 * 109.47214 * 149.72329 * 12 11 9 36 36 H 0.96998 * 119.99944 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.47173 * 30.28203 * 21 11 9 38 38 H 1.09005 * 109.47077 * 150.28374 * 21 11 9 39 39 H 1.08993 * 115.54979 * 29.33116 * 22 21 11 40 40 H 1.09004 * 117.49483 * 0.02562 * 23 22 21 41 41 H 1.08994 * 117.50176 * 145.01848 * 23 22 21 42 42 H 1.08995 * 117.49628 * 252.50731 * 24 23 22 43 43 H 1.08999 * 117.49412 * 107.49208 * 24 23 22 44 44 H 1.07999 * 119.91473 * 179.72376 * 25 7 6 45 45 H 1.08002 * 120.08775 * 180.23111 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2746 -0.0006 5 6 3.6413 -1.2789 -0.0011 6 6 4.3234 -2.4771 -0.0022 7 6 3.6277 -3.6736 -0.0032 8 6 4.3811 -4.9787 -0.0050 9 6 4.6328 -5.4154 1.4153 10 8 4.2395 -4.7336 2.3380 11 7 5.2958 -6.5629 1.6600 12 6 5.5400 -6.9877 3.0407 13 6 6.8571 -6.4280 3.5130 14 1 7.4525 -5.8166 2.8510 15 6 7.3015 -6.6954 4.7904 16 7 6.5762 -7.4395 5.5967 17 14 8.9345 -6.0023 5.3756 18 1 8.7130 -4.6725 5.9982 19 1 9.5336 -6.9232 6.3747 20 1 9.8549 -5.8602 4.2189 21 6 5.7665 -7.3889 0.5454 22 6 4.6781 -8.3925 0.1592 23 6 4.9927 -9.8793 0.3371 24 6 4.9316 -9.2728 -1.0662 25 6 2.2438 -3.6777 -0.0081 26 6 1.5471 -2.4878 -0.0013 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 4.1855 -0.3459 -0.0015 31 1 5.4034 -2.4821 -0.0030 32 1 5.3334 -4.8478 -0.5190 33 1 3.7919 -5.7378 -0.5195 34 1 4.7383 -6.6198 3.6811 35 1 5.5707 -8.0763 3.0859 36 1 6.8890 -7.6280 6.4953 37 1 5.9927 -6.7513 -0.3091 38 1 6.6660 -7.9263 0.8460 39 1 3.6537 -8.0690 0.3433 40 1 5.9750 -10.1423 0.7298 41 1 4.1752 -10.5341 0.6385 42 1 4.0739 -9.5288 -1.6881 43 1 5.8738 -9.1371 -1.5972 44 1 1.7079 -4.6154 -0.0134 45 1 0.4671 -2.4926 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264061077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:10 Heat of formation + Delta-G solvation = -48.393459 kcal Electronic energy + Delta-G solvation = -25560.296562 eV Core-core repulsion = 21928.589823 eV Total energy + Delta-G solvation = -3631.706739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26803 -40.61227 -39.17937 -38.27355 -36.08832 -34.66777 -34.03780 -32.26046 -31.11274 -29.99088 -28.42908 -27.41626 -25.07269 -23.59423 -23.38460 -23.11959 -21.82681 -20.79631 -19.95338 -18.62830 -18.04754 -17.87693 -17.34065 -16.90389 -16.42694 -16.15188 -16.02592 -15.98987 -15.66319 -15.27342 -14.91411 -14.75215 -14.48060 -14.37635 -14.24715 -13.58570 -13.43696 -13.33614 -13.07625 -13.04327 -12.97142 -12.78889 -12.70171 -12.53375 -12.49766 -12.25361 -12.21301 -11.95383 -11.70377 -11.23448 -10.83235 -10.78879 -10.65295 -10.61537 -9.93123 -9.73780 -9.42339 -8.22760 -6.37118 -0.35474 0.44762 1.34709 1.37706 1.38748 1.47021 1.85520 2.28450 2.43276 2.84231 3.02240 3.07119 3.11753 3.66180 3.76788 3.80930 3.99467 4.02014 4.08827 4.15434 4.23505 4.29788 4.40941 4.49131 4.55015 4.60572 4.65039 4.68240 4.69240 4.85260 4.89141 4.92137 5.05314 5.06763 5.11847 5.13262 5.25090 5.29300 5.33370 5.37639 5.44522 5.57078 5.58641 5.86602 5.93374 6.07153 6.51826 6.70604 6.81722 7.28754 7.50862 8.84118 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.003577 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.666423 B = 7826.436534 C = 9686.275414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.396 3.604 3 O -0.509 6.509 4 C -0.197 4.197 5 C -0.079 4.079 6 C -0.135 4.135 7 C -0.037 4.037 8 C -0.095 4.095 9 C 0.501 3.499 10 O -0.592 6.592 11 N -0.598 5.598 12 C 0.267 3.733 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.963 3.037 18 H -0.283 1.283 19 H -0.275 1.275 20 H -0.261 1.261 21 C 0.138 3.862 22 C -0.182 4.182 23 C -0.194 4.194 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.060 4.060 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.135 0.865 34 H -0.006 1.006 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.148 0.852 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 2.168 -19.473 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.278 3.722 3 O -0.389 6.389 4 C -0.197 4.197 5 C -0.097 4.097 6 C -0.153 4.153 7 C -0.037 4.037 8 C -0.134 4.134 9 C 0.290 3.710 10 O -0.472 6.472 11 N -0.328 5.328 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.788 3.212 18 H -0.209 1.209 19 H -0.200 1.200 20 H -0.185 1.185 21 C 0.016 3.984 22 C -0.201 4.201 23 C -0.232 4.232 24 C -0.179 4.179 25 C -0.146 4.146 26 C -0.077 4.077 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.012 0.988 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.166 0.834 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.331 2.958 -18.815 21.667 hybrid contribution 1.134 0.134 1.295 1.726 sum -9.197 3.092 -17.520 20.027 Atomic orbital electron populations 1.22283 0.89993 1.05965 1.06712 1.23157 0.93682 0.86570 0.68832 1.90509 1.73531 1.35628 1.39197 1.20731 0.94363 0.95927 1.08728 1.21441 0.94264 0.98230 0.95744 1.21132 1.00601 0.92063 1.01459 1.19866 0.94712 0.94021 0.95113 1.20854 1.03629 0.96044 0.92888 1.21134 0.77497 0.80452 0.91940 1.90676 1.53419 1.54668 1.48471 1.48169 1.54697 1.21971 1.08003 1.18636 0.94562 0.93975 0.78263 1.21730 1.05419 1.31878 0.98969 0.92866 1.25823 1.01292 0.95364 0.96598 1.70052 1.39750 1.38953 1.07990 0.85482 0.79297 0.77974 0.78478 1.20899 1.19972 1.18483 1.21299 0.95678 0.92816 0.88630 1.22725 0.99723 0.92547 1.05089 1.23059 1.02817 0.95590 1.01688 1.23030 1.04462 1.00778 0.89653 1.21323 0.93156 0.99692 1.00469 1.21729 1.01671 0.90071 0.94275 0.86916 0.89626 0.85919 0.85894 0.85470 0.85872 0.84700 0.98783 0.96161 0.92488 0.87544 0.91302 0.88307 0.89679 0.88925 0.86888 0.87246 0.83433 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 8.93 71.24 0.64 -1.71 16 2 C 0.40 9.06 7.23 28.03 0.20 9.27 16 3 O -0.51 -15.77 17.08 -2.93 -0.05 -15.82 16 4 C -0.20 -4.81 5.87 -20.15 -0.12 -4.93 16 5 C -0.08 -2.22 9.60 22.58 0.22 -2.00 16 6 C -0.13 -3.82 9.68 22.23 0.22 -3.60 16 7 C -0.04 -0.98 4.38 -19.79 -0.09 -1.07 16 8 C -0.09 -2.40 4.37 29.10 0.13 -2.27 16 9 C 0.50 19.76 7.67 87.66 0.67 20.43 16 10 O -0.59 -30.11 15.61 -3.03 -0.05 -30.16 16 11 N -0.60 -24.31 2.46 -826.13 -2.03 -26.34 16 12 C 0.27 14.30 5.17 85.63 0.44 14.74 16 13 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 14 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.47 5.46 84.65 0.46 0.94 16 16 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 17 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 18 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.14 4.01 5.49 86.38 0.47 4.48 16 22 C -0.18 -4.34 5.92 -10.79 -0.06 -4.40 16 23 C -0.19 -4.54 10.18 30.59 0.31 -4.23 16 24 C -0.14 -2.36 10.25 30.59 0.31 -2.04 16 25 C -0.13 -2.91 9.67 22.23 0.22 -2.70 16 26 C -0.06 -1.18 9.47 22.58 0.21 -0.96 16 27 H 0.11 1.02 8.09 -2.39 -0.02 1.00 16 28 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 29 H 0.12 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.12 3.50 7.65 -2.91 -0.02 3.48 16 31 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.12 2.53 7.35 -2.39 -0.02 2.51 16 33 H 0.14 2.46 7.95 -2.39 -0.02 2.44 16 34 H -0.01 -0.37 7.41 -2.39 -0.02 -0.39 16 35 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.11 2.29 6.45 -2.39 -0.02 2.27 16 38 H 0.07 2.21 7.81 -2.38 -0.02 2.19 16 39 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.08 2.18 8.03 -2.38 -0.02 2.16 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 45 H 0.17 1.86 7.05 -2.91 -0.02 1.84 16 Total: -1.00 -81.74 384.89 5.63 -76.10 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.98 Total: 16.08 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 4.47 Total: -11.00 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.74 Total: -82.50 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.10 Total: -45.98 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -81.74 5.63 -76.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264061077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.710 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds