Wall clock time and date at job start Tue Mar 31 2020 12:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48504 * 109.46885 * 269.99764 * 3 2 1 5 5 H 1.48498 * 109.46819 * 29.99636 * 3 2 1 6 6 H 1.48493 * 109.47111 * 149.99804 * 3 2 1 7 7 C 1.37874 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00296 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99839 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00058 * 66.04364 * 10 9 7 12 12 C 1.52998 * 109.47214 * 56.53557 * 11 10 9 13 13 O 1.42907 * 109.47173 * 68.23072 * 12 11 10 14 14 C 1.46900 * 110.99943 * 189.99998 * 10 9 7 15 15 C 1.50695 * 109.47162 * 174.38788 * 14 10 9 16 16 C 1.39870 * 126.04018 * 95.92682 * 15 14 10 17 17 N 1.30843 * 108.20362 * 179.97438 * 16 15 14 18 18 N 1.40086 * 108.20356 * 359.97438 * 17 16 15 19 19 C 1.46497 * 126.03663 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46900 * 305.00631 * 19 18 17 21 21 C 1.38232 * 119.99850 * 269.72302 * 20 19 18 22 22 C 1.38236 * 119.99920 * 179.76995 * 21 20 19 23 23 C 1.38231 * 119.99916 * 0.51105 * 22 21 20 24 24 C 1.38230 * 120.00290 * 359.74050 * 23 22 21 25 25 C 1.38231 * 120.00123 * 90.00402 * 20 19 18 26 26 C 1.34946 * 107.92360 * 0.02562 * 18 17 16 27 27 H 0.96998 * 119.99960 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46851 * 59.99732 * 9 7 2 29 29 H 1.08995 * 109.46692 * 299.99967 * 9 7 2 30 30 H 1.09005 * 109.46641 * 176.53216 * 11 10 9 31 31 H 1.08997 * 109.46913 * 296.53035 * 11 10 9 32 32 H 1.08995 * 109.47242 * 188.22949 * 12 11 10 33 33 H 1.09004 * 109.47029 * 308.23817 * 12 11 10 34 34 H 0.96694 * 113.99693 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.47017 * 54.38735 * 14 10 9 36 36 H 1.09001 * 109.46914 * 294.38759 * 14 10 9 37 37 H 1.08001 * 125.89965 * 359.71978 * 16 15 14 38 38 H 1.08994 * 109.46925 * 65.00321 * 19 18 17 39 39 H 1.08997 * 109.47279 * 185.00298 * 19 18 17 40 40 H 1.08002 * 119.99958 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.99820 * 180.22714 * 22 21 20 42 42 H 1.08005 * 119.99841 * 179.73106 * 23 22 21 43 43 H 1.07998 * 120.00589 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00102 * 359.97438 * 25 20 19 45 45 H 1.08004 * 126.12354 * 180.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 3.6523 -3.2606 -1.2526 12 6 4.2115 -2.4690 -2.4364 13 8 5.6387 -2.5431 -2.4275 14 6 5.4501 -2.6250 0.2397 15 6 5.8923 -4.0598 0.3698 16 6 6.4252 -4.8525 -0.6519 17 7 6.6880 -6.0349 -0.1570 18 7 6.3306 -6.0316 1.1975 19 6 6.4600 -7.1576 2.1258 20 6 5.7423 -8.3574 1.5632 21 6 4.4098 -8.5695 1.8640 22 6 3.7502 -9.6674 1.3441 23 6 4.4258 -10.5590 0.5321 24 6 5.7596 -10.3498 0.2355 25 6 6.4179 -9.2490 0.7512 26 6 5.8449 -4.8085 1.4960 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 4.0795 -4.2635 -1.2518 31 1 2.5679 -3.3276 -1.3400 32 1 3.8317 -2.8903 -3.3671 33 1 3.9014 -1.4271 -2.3558 34 1 6.0619 -2.0629 -3.1522 35 1 5.6841 -2.0879 1.1588 36 1 5.9711 -2.1587 -0.5965 37 1 6.5875 -4.5435 -1.6739 38 1 7.5147 -7.3963 2.2625 39 1 6.0208 -6.8889 3.0864 40 1 3.8833 -7.8755 2.5025 41 1 2.7082 -9.8311 1.5761 42 1 3.9116 -11.4192 0.1294 43 1 6.2876 -11.0466 -0.3986 44 1 7.4600 -9.0855 0.5195 45 1 5.4838 -4.4848 2.4610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264620398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:10 Heat of formation + Delta-G solvation = 73.561789 kcal Electronic energy + Delta-G solvation = -26037.375116 eV Core-core repulsion = 22443.249504 eV Total energy + Delta-G solvation = -3594.125612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92799 -39.26932 -37.84587 -35.17489 -34.07251 -32.46665 -31.05422 -30.70533 -30.50323 -28.60012 -27.48399 -26.03896 -23.74272 -22.75296 -22.62895 -21.93510 -20.43086 -19.96424 -19.02231 -17.17431 -16.98150 -16.71681 -16.42233 -15.72776 -15.55612 -15.32228 -14.73313 -14.39356 -14.09438 -13.91918 -13.57112 -13.35284 -13.17248 -12.90673 -12.77651 -12.59365 -12.36710 -12.33698 -12.00587 -11.55378 -11.44999 -11.24360 -11.21106 -11.16237 -10.78434 -10.70085 -10.24330 -10.00292 -9.78539 -9.43524 -9.10735 -9.07633 -9.02936 -8.98641 -8.55055 -7.98577 -7.07745 -6.03419 -3.99910 1.07360 1.27302 2.25452 2.82210 3.24867 3.27634 3.36579 3.39268 3.71052 4.37940 4.43089 4.56878 4.67959 4.83906 4.88934 4.96899 5.14233 5.16789 5.23733 5.30662 5.34776 5.42696 5.51457 5.78073 5.80604 5.82545 5.88264 5.95063 6.00246 6.05019 6.24559 6.29377 6.35458 6.41105 6.43542 6.51891 6.79607 6.80406 6.82611 7.02160 7.06928 7.10220 7.35396 7.67707 7.96123 8.06741 8.08399 8.20669 8.73006 9.06315 9.59250 11.09861 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.003160 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.067513 B = 8858.952895 C = 9396.377957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.873 3.127 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.157 3.843 10 N -0.519 5.519 11 C 0.071 3.929 12 C 0.034 3.966 13 O -0.565 6.565 14 C 0.115 3.885 15 C -0.204 4.204 16 C 0.063 3.937 17 N -0.306 5.306 18 N -0.379 5.379 19 C 0.180 3.820 20 C -0.106 4.106 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.085 4.085 26 C 0.059 3.941 27 H 0.262 0.738 28 H 0.026 0.974 29 H -0.011 1.011 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.361 0.639 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.183 0.817 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.928 -16.228 1.281 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.701 3.299 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.242 5.242 11 C -0.058 4.058 12 C -0.044 4.044 13 O -0.370 6.370 14 C -0.013 4.013 15 C -0.216 4.216 16 C -0.124 4.124 17 N -0.127 5.127 18 N -0.162 5.162 19 C 0.059 3.941 20 C -0.106 4.106 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.103 4.103 26 C -0.086 4.086 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.007 0.993 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.208 0.792 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.200 0.800 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.883 -17.978 2.104 22.812 hybrid contribution 0.258 2.587 -1.054 2.806 sum 14.141 -15.391 1.050 20.927 Atomic orbital electron populations 1.69898 1.06121 1.26721 1.51420 1.24902 0.94687 0.98763 0.95035 0.86892 0.80468 0.84186 0.78379 1.20499 1.21275 1.19083 1.21072 0.88915 0.94547 1.49829 0.90291 1.20245 0.96733 0.84886 0.95097 1.62158 1.11145 1.18277 1.32577 1.22096 1.00735 0.96722 0.86225 1.23137 0.79977 1.01851 0.99483 1.86586 1.20272 1.77236 1.52925 1.20623 0.89497 0.90368 1.00828 1.20037 1.10217 0.98859 0.92444 1.23966 0.97920 0.90281 1.00235 1.77266 1.24264 1.21679 0.89449 1.48449 1.50352 1.09329 1.08102 1.20430 1.00952 0.82559 0.90207 1.19842 0.94701 0.96063 1.00031 1.21098 0.93698 0.97332 0.99510 1.21144 0.99968 0.94965 0.98095 1.21196 0.94728 0.99291 0.97978 1.21133 0.94953 0.98038 1.00308 1.21012 1.00083 0.93650 0.95574 1.22317 1.00018 0.85496 1.00808 0.92763 0.95636 0.99311 0.91664 0.89153 0.94598 0.92102 0.79246 0.92263 0.91408 0.80035 0.89554 0.88116 0.85926 0.85895 0.86133 0.86069 0.85981 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -14.08 9.11 -34.44 -0.31 -14.39 16 8 H 0.08 2.41 7.34 -52.49 -0.39 2.03 16 9 C 0.16 3.72 3.50 -4.97 -0.02 3.71 16 10 N -0.52 -10.84 4.73 -237.52 -1.12 -11.97 16 11 C 0.07 1.39 5.45 -3.82 -0.02 1.37 16 12 C 0.03 0.58 6.85 37.16 0.25 0.84 16 13 O -0.57 -8.17 8.61 -35.23 -0.30 -8.48 16 14 C 0.12 2.07 4.99 -4.98 -0.02 2.05 16 15 C -0.20 -3.36 4.63 -105.06 -0.49 -3.85 16 16 C 0.06 1.01 10.34 -17.36 -0.18 0.83 16 17 N -0.31 -4.90 12.41 30.63 0.38 -4.52 16 18 N -0.38 -5.30 3.67 -62.55 -0.23 -5.53 16 19 C 0.18 1.86 6.64 -5.19 -0.03 1.82 16 20 C -0.11 -1.18 5.31 -104.62 -0.56 -1.74 16 21 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.11 -1.11 10.05 -39.59 -0.40 -1.51 16 24 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 25 C -0.08 -0.91 9.70 -39.58 -0.38 -1.30 16 26 C 0.06 0.87 11.36 -17.22 -0.20 0.67 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.03 0.63 7.05 -51.93 -0.37 0.26 16 29 H -0.01 -0.25 5.17 -51.93 -0.27 -0.52 16 30 H 0.06 1.25 6.02 -51.93 -0.31 0.93 16 31 H 0.09 1.95 6.96 -51.93 -0.36 1.59 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.16 5.79 -51.93 -0.30 0.86 16 34 H 0.36 3.69 9.12 45.56 0.42 4.10 16 35 H 0.06 1.05 8.02 -51.93 -0.42 0.64 16 36 H 0.07 1.22 5.20 -51.93 -0.27 0.95 16 37 H 0.18 2.78 6.63 -52.49 -0.35 2.43 16 38 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.10 0.80 8.01 -51.93 -0.42 0.38 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.17 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -33.07 363.01 -8.91 -41.98 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.58 Total: 7.56 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.63 Total: -14.49 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.20 Total: -48.63 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.30 Total: -8.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.07 -8.91 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264620398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.546 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds