Wall clock time and date at job start Tue Mar 31 2020 10:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21256 * 120.00061 * 2 1 4 4 C 1.47168 * 119.99982 * 179.97438 * 2 1 3 5 5 C 1.39851 * 120.16979 * 179.97438 * 4 2 1 6 6 C 1.37891 * 119.82397 * 180.02562 * 5 4 2 7 7 C 1.38407 * 120.16835 * 0.02730 * 6 5 4 8 8 C 1.50701 * 119.82061 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46995 * 90.00112 * 8 7 6 10 10 O 1.21294 * 120.00103 * 6.14304 * 9 8 7 11 11 N 1.34777 * 120.00094 * 186.14275 * 9 8 7 12 12 C 1.37097 * 119.99805 * 354.20978 * 11 9 8 13 13 H 1.08008 * 119.99838 * 130.09502 * 12 11 9 14 14 C 1.38946 * 120.00263 * 310.09699 * 12 11 9 15 15 N 1.31412 * 120.00148 * 340.87284 * 14 12 11 16 16 Si 1.86804 * 120.00267 * 160.87903 * 14 12 11 17 17 H 1.48503 * 109.47412 * 89.99633 * 16 14 12 18 18 H 1.48501 * 109.47038 * 209.99952 * 16 14 12 19 19 H 1.48506 * 109.46970 * 329.99613 * 16 14 12 20 20 C 1.46495 * 120.00341 * 174.21480 * 11 9 8 21 21 C 1.54260 * 110.03689 * 122.09099 * 20 11 9 22 22 C 1.54966 * 104.16129 * 95.75386 * 21 20 11 23 23 C 1.54886 * 102.77722 * 37.89166 * 22 21 20 24 24 C 1.53876 * 110.03353 * 239.31267 * 20 11 9 25 25 C 1.38394 * 120.35126 * 0.23016 * 7 6 5 26 26 C 1.37894 * 120.17536 * 359.48814 * 25 7 6 27 27 H 1.09001 * 109.47124 * 239.99998 * 1 2 3 28 28 H 1.09003 * 109.47246 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47454 * 119.99715 * 1 2 3 30 30 H 1.07997 * 120.09225 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.91460 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.47711 * 330.00357 * 8 7 6 33 33 H 1.09005 * 109.47097 * 209.99728 * 8 7 6 34 34 H 0.96999 * 120.00294 * 185.05692 * 15 14 12 35 35 H 1.09003 * 110.01554 * 0.69596 * 20 11 9 36 36 H 1.08999 * 110.49103 * 214.40477 * 21 20 11 37 37 H 1.09005 * 110.48592 * 337.04455 * 21 20 11 38 38 H 1.08997 * 110.72203 * 279.57285 * 22 21 20 39 39 H 1.09007 * 110.92036 * 156.29697 * 22 21 20 40 40 H 1.08996 * 110.49082 * 203.40585 * 23 22 21 41 41 H 1.09002 * 110.60131 * 80.81523 * 23 22 21 42 42 H 1.08996 * 110.02941 * 359.94212 * 24 20 11 43 43 H 1.09000 * 110.03534 * 121.37740 * 24 20 11 44 44 H 1.08001 * 119.91609 * 179.71954 * 25 7 6 45 45 H 1.07991 * 120.09233 * 180.23261 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6413 -1.2787 0.0000 6 6 4.3235 -2.4770 0.0000 7 6 3.6278 -3.6735 0.0000 8 6 4.3813 -4.9785 -0.0006 9 6 4.6330 -5.4139 1.4201 10 8 4.1447 -4.7927 2.3403 11 7 5.4006 -6.4936 1.6681 12 6 5.8547 -7.2650 0.6297 13 1 6.9014 -7.5236 0.5665 14 6 4.9682 -7.7141 -0.3415 15 7 3.6779 -7.7363 -0.0936 16 14 5.6107 -8.2866 -1.9995 17 1 5.8986 -9.7423 -1.9432 18 1 4.5882 -8.0242 -3.0440 19 1 6.8561 -7.5481 -2.3296 20 6 5.7498 -6.8429 3.0473 21 6 5.2692 -8.2732 3.3681 22 6 6.5166 -9.1577 3.1165 23 6 7.6750 -8.2732 3.6406 24 6 7.2789 -6.8427 3.2201 25 6 2.2439 -3.6777 -0.0048 26 6 1.5471 -2.4877 0.0010 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 4.1856 -0.3459 -0.0004 31 1 5.4035 -2.4819 0.0000 32 1 5.3336 -4.8482 -0.5146 33 1 3.7920 -5.7381 -0.5144 34 1 3.0659 -8.1176 -0.7424 35 1 5.2960 -6.1326 3.7384 36 1 4.9542 -8.3454 4.4091 37 1 4.4559 -8.5608 2.7017 38 1 6.6368 -9.3612 2.0525 39 1 6.4546 -10.0877 3.6816 40 1 8.6166 -8.5612 3.1732 41 1 7.7514 -8.3444 4.7256 42 1 7.7611 -6.5836 2.2776 43 1 7.5670 -6.1323 3.9950 44 1 1.7081 -4.6154 -0.0094 45 1 0.4672 -2.4926 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265568456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:14 Heat of formation + Delta-G solvation = -57.017421 kcal Electronic energy + Delta-G solvation = -26520.900123 eV Core-core repulsion = 22888.819420 eV Total energy + Delta-G solvation = -3632.080702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.81565 -39.07177 -37.95297 -36.51586 -34.09628 -32.53404 -31.44347 -30.87023 -29.77363 -27.95002 -27.68378 -26.49082 -24.64212 -22.54146 -22.13646 -20.17774 -19.79592 -19.33571 -19.25628 -16.81331 -16.49432 -15.75530 -15.54252 -15.24306 -14.89335 -14.84273 -14.55261 -14.29629 -14.11856 -13.80416 -13.51292 -13.33802 -13.12330 -12.68174 -12.54160 -12.28116 -12.21820 -11.83217 -11.58349 -11.56032 -11.26734 -11.01331 -10.81976 -10.78938 -10.64059 -10.51558 -10.47610 -10.37932 -10.27749 -9.88488 -9.79675 -9.62835 -8.91852 -8.62407 -8.58419 -8.07242 -7.35561 -6.50861 -4.25620 0.96597 1.78817 2.64294 3.03366 3.14648 3.16696 3.95209 4.13679 4.14638 4.20564 4.77987 4.82912 4.99906 5.15956 5.28000 5.34440 5.35023 5.37892 5.43046 5.48194 5.61116 5.74037 5.80879 5.94791 6.12712 6.19993 6.22159 6.25334 6.29853 6.32201 6.40392 6.45840 6.51450 6.55211 6.57893 6.62522 6.72353 6.75323 6.89234 7.03541 7.06820 7.17746 7.20008 7.30711 7.40976 7.63270 7.92457 8.59792 8.84528 9.55730 9.99257 10.54701 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.003829 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.378874 B = 7311.526419 C = 8218.752098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.472 6.472 4 C -0.197 4.197 5 C -0.060 4.060 6 C -0.131 4.131 7 C -0.001 4.001 8 C -0.109 4.109 9 C 0.521 3.479 10 O -0.607 6.607 11 N -0.448 5.448 12 C -0.324 4.324 13 H 0.083 0.917 14 C 0.047 3.953 15 N -0.858 5.858 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.133 3.867 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.118 4.118 26 C -0.072 4.072 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.272 0.728 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.128 0.872 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 3.198 -1.034 3.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.350 6.350 4 C -0.198 4.198 5 C -0.079 4.079 6 C -0.149 4.149 7 C -0.001 4.001 8 C -0.148 4.148 9 C 0.312 3.688 10 O -0.493 6.493 11 N -0.169 5.169 12 C -0.452 4.452 13 H 0.100 0.900 14 C -0.159 4.159 15 N -0.495 5.495 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.191 1.191 20 C 0.029 3.971 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.166 4.166 25 C -0.136 4.136 26 C -0.090 4.090 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.146 0.854 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.526 4.043 -0.677 4.374 hybrid contribution 0.199 -0.769 -0.842 1.158 sum -1.327 3.274 -1.519 3.846 Atomic orbital electron populations 1.22238 0.94246 1.04613 1.04551 1.22496 0.91468 0.87779 0.70360 1.90495 1.72312 1.34513 1.37636 1.20290 0.94605 0.94272 1.10590 1.21257 0.93086 0.98190 0.95329 1.21038 1.00073 0.91749 1.02012 1.20160 0.93922 0.95186 0.90871 1.21035 1.01386 0.94399 0.98008 1.19893 0.79886 0.79731 0.89297 1.90526 1.54252 1.57721 1.46791 1.43373 1.47206 1.22324 1.03957 1.19166 0.93876 1.31478 1.00724 0.89966 1.25528 0.95078 0.95229 1.00027 1.69923 1.02374 1.41551 1.35649 0.86307 0.79221 0.79342 0.82312 1.20142 1.20487 1.19087 1.21521 0.93186 0.95855 0.86523 1.22517 0.98572 0.95177 0.99479 1.22456 0.94687 0.96543 1.01667 1.22284 0.98230 0.95817 0.99324 1.22459 0.97034 0.96103 1.01050 1.21056 0.93988 0.98045 1.00545 1.21311 0.99426 0.91531 0.96748 0.88857 0.90118 0.88958 0.85648 0.85871 0.89586 0.85386 0.91760 0.90479 0.93334 0.90004 0.90336 0.93396 0.92651 0.92820 0.91011 0.92979 0.85394 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 8.93 36.00 0.32 -1.62 16 2 C 0.40 5.68 7.23 -30.69 -0.22 5.46 16 3 O -0.47 -8.09 17.08 5.58 0.10 -7.99 16 4 C -0.20 -3.09 5.87 -105.07 -0.62 -3.70 16 5 C -0.06 -1.01 9.60 -39.11 -0.38 -1.38 16 6 C -0.13 -2.33 9.68 -39.65 -0.38 -2.71 16 7 C 0.00 -0.01 4.39 -104.50 -0.46 -0.47 16 8 C -0.11 -2.33 4.18 -29.03 -0.12 -2.45 16 9 C 0.52 12.63 6.96 -10.98 -0.08 12.56 16 10 O -0.61 -16.18 15.41 5.55 0.09 -16.09 16 11 N -0.45 -10.40 2.33 -106.55 -0.25 -10.65 16 12 C -0.32 -7.39 6.34 -14.94 -0.09 -7.49 16 13 H 0.08 1.85 7.18 -52.48 -0.38 1.47 16 14 C 0.05 1.07 3.68 -17.47 -0.06 1.00 16 15 N -0.86 -20.54 11.13 55.50 0.62 -19.92 16 16 Si 0.90 17.83 29.60 -169.99 -5.03 12.80 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 C 0.13 2.82 3.35 -66.82 -0.22 2.59 16 21 C -0.12 -2.35 6.10 -25.03 -0.15 -2.50 16 22 C -0.12 -2.00 6.56 -24.70 -0.16 -2.16 16 23 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 24 C -0.13 -2.30 6.24 -25.61 -0.16 -2.46 16 25 C -0.12 -2.12 9.67 -39.65 -0.38 -2.50 16 26 C -0.07 -1.08 9.47 -39.10 -0.37 -1.45 16 27 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.13 1.95 7.65 -52.49 -0.40 1.55 16 31 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.09 1.74 7.96 -51.93 -0.41 1.33 16 33 H 0.13 2.88 5.02 -51.93 -0.26 2.62 16 34 H 0.27 6.20 8.32 -40.82 -0.34 5.86 16 35 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.87 7.98 -51.93 -0.41 1.46 16 38 H 0.08 1.48 7.24 -51.93 -0.38 1.10 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.35 6.93 -51.93 -0.36 0.99 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 45 H 0.13 1.43 7.05 -52.49 -0.37 1.06 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -28.18 365.36 -9.38 -37.56 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.69 Total: 10.10 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.71 Total: -11.31 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.37 Total: -30.57 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.18 Total: -24.09 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.18 -9.38 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265568456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.456 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds