Wall clock time and date at job start Tue Mar 31 2020 10:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21256 * 120.00061 * 2 1 4 4 C 1.47168 * 119.99982 * 179.97438 * 2 1 3 5 5 C 1.39851 * 120.16979 * 179.97438 * 4 2 1 6 6 C 1.37891 * 119.82397 * 180.02562 * 5 4 2 7 7 C 1.38407 * 120.16835 * 0.02730 * 6 5 4 8 8 C 1.50701 * 119.82061 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46995 * 90.00112 * 8 7 6 10 10 O 1.21294 * 120.00103 * 6.14304 * 9 8 7 11 11 N 1.34777 * 120.00094 * 186.14275 * 9 8 7 12 12 C 1.37097 * 119.99805 * 354.20978 * 11 9 8 13 13 H 1.08008 * 119.99838 * 130.09502 * 12 11 9 14 14 C 1.38946 * 120.00263 * 310.09699 * 12 11 9 15 15 N 1.31412 * 120.00148 * 340.87284 * 14 12 11 16 16 Si 1.86804 * 120.00267 * 160.87903 * 14 12 11 17 17 H 1.48503 * 109.47412 * 89.99633 * 16 14 12 18 18 H 1.48501 * 109.47038 * 209.99952 * 16 14 12 19 19 H 1.48506 * 109.46970 * 329.99613 * 16 14 12 20 20 C 1.46495 * 120.00341 * 174.21480 * 11 9 8 21 21 C 1.54260 * 110.03689 * 122.09099 * 20 11 9 22 22 C 1.54966 * 104.16129 * 95.75386 * 21 20 11 23 23 C 1.54886 * 102.77722 * 37.89166 * 22 21 20 24 24 C 1.53876 * 110.03353 * 239.31267 * 20 11 9 25 25 C 1.38394 * 120.35126 * 0.23016 * 7 6 5 26 26 C 1.37894 * 120.17536 * 359.48814 * 25 7 6 27 27 H 1.09001 * 109.47124 * 239.99998 * 1 2 3 28 28 H 1.09003 * 109.47246 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47454 * 119.99715 * 1 2 3 30 30 H 1.07997 * 120.09225 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.91460 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.47711 * 330.00357 * 8 7 6 33 33 H 1.09005 * 109.47097 * 209.99728 * 8 7 6 34 34 H 0.96999 * 120.00294 * 185.05692 * 15 14 12 35 35 H 1.09003 * 110.01554 * 0.69596 * 20 11 9 36 36 H 1.08999 * 110.49103 * 214.40477 * 21 20 11 37 37 H 1.09005 * 110.48592 * 337.04455 * 21 20 11 38 38 H 1.08997 * 110.72203 * 279.57285 * 22 21 20 39 39 H 1.09007 * 110.92036 * 156.29697 * 22 21 20 40 40 H 1.08996 * 110.49082 * 203.40585 * 23 22 21 41 41 H 1.09002 * 110.60131 * 80.81523 * 23 22 21 42 42 H 1.08996 * 110.02941 * 359.94212 * 24 20 11 43 43 H 1.09000 * 110.03534 * 121.37740 * 24 20 11 44 44 H 1.08001 * 119.91609 * 179.71954 * 25 7 6 45 45 H 1.07991 * 120.09233 * 180.23261 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6413 -1.2787 0.0000 6 6 4.3235 -2.4770 0.0000 7 6 3.6278 -3.6735 0.0000 8 6 4.3813 -4.9785 -0.0006 9 6 4.6330 -5.4139 1.4201 10 8 4.1447 -4.7927 2.3403 11 7 5.4006 -6.4936 1.6681 12 6 5.8547 -7.2650 0.6297 13 1 6.9014 -7.5236 0.5665 14 6 4.9682 -7.7141 -0.3415 15 7 3.6779 -7.7363 -0.0936 16 14 5.6107 -8.2866 -1.9995 17 1 5.8986 -9.7423 -1.9432 18 1 4.5882 -8.0242 -3.0440 19 1 6.8561 -7.5481 -2.3296 20 6 5.7498 -6.8429 3.0473 21 6 5.2692 -8.2732 3.3681 22 6 6.5166 -9.1577 3.1165 23 6 7.6750 -8.2732 3.6406 24 6 7.2789 -6.8427 3.2201 25 6 2.2439 -3.6777 -0.0048 26 6 1.5471 -2.4877 0.0010 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 4.1856 -0.3459 -0.0004 31 1 5.4035 -2.4819 0.0000 32 1 5.3336 -4.8482 -0.5146 33 1 3.7920 -5.7381 -0.5144 34 1 3.0659 -8.1176 -0.7424 35 1 5.2960 -6.1326 3.7384 36 1 4.9542 -8.3454 4.4091 37 1 4.4559 -8.5608 2.7017 38 1 6.6368 -9.3612 2.0525 39 1 6.4546 -10.0877 3.6816 40 1 8.6166 -8.5612 3.1732 41 1 7.7514 -8.3444 4.7256 42 1 7.7611 -6.5836 2.2776 43 1 7.5670 -6.1323 3.9950 44 1 1.7081 -4.6154 -0.0094 45 1 0.4672 -2.4926 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265568456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:13 Heat of formation + Delta-G solvation = -69.775122 kcal Electronic energy + Delta-G solvation = -26521.453338 eV Core-core repulsion = 22888.819420 eV Total energy + Delta-G solvation = -3632.633918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19756 -40.64897 -39.30403 -38.14311 -35.88667 -33.92479 -33.17598 -32.18059 -30.90402 -29.43477 -29.15646 -28.01142 -26.38325 -23.90037 -23.46456 -21.72117 -21.19556 -20.98147 -20.66618 -18.38305 -17.96183 -17.39389 -17.12175 -16.72185 -16.28794 -16.11479 -15.96747 -15.78080 -15.55003 -15.24578 -15.04335 -14.73925 -14.44738 -14.30249 -14.11902 -13.43034 -13.24218 -13.19875 -13.04152 -12.96187 -12.92619 -12.59595 -12.41407 -12.30626 -12.20477 -12.01054 -11.91215 -11.86287 -11.76420 -11.49972 -11.22078 -10.80808 -10.69937 -10.31539 -9.92878 -9.62117 -9.17716 -8.29033 -6.09456 -0.30910 0.45296 1.42116 1.44333 1.51694 1.59502 2.19609 2.36491 2.77319 3.01700 3.13026 3.17696 3.81597 3.87485 3.93869 3.97752 4.02744 4.18150 4.22092 4.38019 4.46652 4.58224 4.64277 4.66462 4.68372 4.75621 4.78778 4.81253 4.88484 4.90272 4.95024 5.06878 5.11198 5.13496 5.17646 5.23590 5.26567 5.30163 5.44383 5.47080 5.48724 5.58739 5.68557 5.73395 5.96204 6.14394 6.52362 6.77100 7.04757 7.71042 8.16570 8.77429 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.003829 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.378874 B = 7311.526419 C = 8218.752098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.401 3.599 3 O -0.506 6.506 4 C -0.200 4.200 5 C -0.070 4.070 6 C -0.140 4.140 7 C -0.028 4.028 8 C -0.097 4.097 9 C 0.504 3.496 10 O -0.642 6.642 11 N -0.451 5.451 12 C -0.332 4.332 13 H 0.087 0.913 14 C 0.020 3.980 15 N -0.885 5.885 16 Si 0.960 3.040 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.260 1.260 20 C 0.120 3.880 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.055 4.055 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.273 0.727 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.122 0.878 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 3.048 -1.277 3.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.283 3.717 3 O -0.385 6.385 4 C -0.201 4.201 5 C -0.088 4.088 6 C -0.158 4.158 7 C -0.029 4.029 8 C -0.136 4.136 9 C 0.295 3.705 10 O -0.531 6.531 11 N -0.170 5.170 12 C -0.460 4.460 13 H 0.104 0.896 14 C -0.184 4.184 15 N -0.522 5.522 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.184 1.184 20 C 0.016 3.984 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.073 4.073 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.669 3.866 -0.918 4.310 hybrid contribution 0.202 -0.706 -0.717 1.026 sum -1.467 3.160 -1.635 3.848 Atomic orbital electron populations 1.22276 0.90033 1.06053 1.06574 1.23025 0.93556 0.86268 0.68831 1.90493 1.73475 1.35299 1.39282 1.20688 0.94430 0.95656 1.09358 1.21441 0.94121 0.97920 0.95286 1.21101 1.00470 0.91781 1.02448 1.20147 0.94807 0.94679 0.93222 1.20848 1.01484 0.95263 0.96032 1.20447 0.80020 0.79832 0.90201 1.90474 1.55810 1.58856 1.47954 1.43581 1.46464 1.21947 1.04977 1.19328 0.94127 1.31464 1.01059 0.89577 1.26111 0.94954 0.95044 1.02314 1.70018 1.03484 1.42112 1.36570 0.85426 0.78746 0.78843 0.78602 1.19918 1.20615 1.18419 1.21750 0.95487 0.95970 0.85163 1.22434 0.98605 0.94860 0.99416 1.22384 0.93826 0.97440 1.01021 1.22250 0.98140 0.93189 1.00899 1.22395 0.94194 0.98459 1.01021 1.21160 0.93586 0.99110 1.01474 1.21648 1.01395 0.89913 0.94358 0.86927 0.89190 0.86383 0.84956 0.85469 0.89422 0.86628 0.91673 0.93019 0.91692 0.93910 0.92272 0.90816 0.90744 0.90425 0.92192 0.91681 0.86025 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 8.93 71.24 0.64 -2.38 16 2 C 0.40 10.60 7.23 28.03 0.20 10.80 16 3 O -0.51 -16.78 17.08 -2.96 -0.05 -16.83 16 4 C -0.20 -6.03 5.87 -20.15 -0.12 -6.15 16 5 C -0.07 -2.33 9.60 22.58 0.22 -2.11 16 6 C -0.14 -5.14 9.68 22.23 0.22 -4.92 16 7 C -0.03 -1.12 4.39 -19.79 -0.09 -1.21 16 8 C -0.10 -4.32 4.18 29.10 0.12 -4.20 16 9 C 0.50 25.52 6.96 87.66 0.61 26.13 16 10 O -0.64 -35.91 15.41 -3.07 -0.05 -35.95 16 11 N -0.45 -21.65 2.33 -609.38 -1.42 -23.07 16 12 C -0.33 -15.42 6.34 84.04 0.53 -14.89 16 13 H 0.09 3.89 7.18 -2.91 -0.02 3.87 16 14 C 0.02 0.89 3.68 84.93 0.31 1.21 16 15 N -0.88 -43.52 11.13 21.66 0.24 -43.28 16 16 Si 0.96 36.55 29.60 68.60 2.03 38.58 16 17 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 18 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 20 C 0.12 5.20 3.35 45.72 0.15 5.35 16 21 C -0.11 -4.56 6.10 31.69 0.19 -4.37 16 22 C -0.11 -3.60 6.56 31.91 0.21 -3.39 16 23 C -0.11 -3.08 6.83 31.67 0.22 -2.86 16 24 C -0.12 -4.30 6.24 31.32 0.20 -4.11 16 25 C -0.14 -4.88 9.67 22.23 0.22 -4.67 16 26 C -0.06 -1.57 9.47 22.58 0.21 -1.36 16 27 H 0.11 1.41 8.09 -2.39 -0.02 1.39 16 28 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.12 1.31 8.09 -2.39 -0.02 1.29 16 30 H 0.13 4.16 7.65 -2.91 -0.02 4.14 16 31 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 32 H 0.09 3.72 7.96 -2.39 -0.02 3.70 16 33 H 0.12 5.42 5.02 -2.38 -0.01 5.41 16 34 H 0.27 12.76 8.32 -92.71 -0.77 11.99 16 35 H 0.05 2.46 6.96 -2.39 -0.02 2.44 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.04 2.02 7.98 -2.38 -0.02 2.00 16 38 H 0.06 2.18 7.24 -2.39 -0.02 2.16 16 39 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 2.24 6.93 -2.39 -0.02 2.22 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 45 H 0.17 3.22 7.05 -2.92 -0.02 3.20 16 Total: -1.00 -63.91 365.36 5.78 -58.13 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.98 Total: 35.54 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.04 Total: -13.13 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -1.18 Total: -66.34 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.10 Total: -52.78 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -63.91 5.78 -58.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265568456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.649 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds