Wall clock time and date at job start Tue Mar 31 2020 11:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99741 * 2 1 4 4 C 1.50700 * 109.46956 * 180.02562 * 3 2 1 5 5 C 1.34517 * 125.79241 * 90.30890 * 4 3 2 6 6 C 1.41376 * 106.84134 * 180.18534 * 5 4 3 7 7 C 1.34506 * 106.84180 * 359.57336 * 6 5 4 8 8 C 1.50707 * 125.79129 * 180.22311 * 7 6 5 9 9 N 1.46908 * 109.46711 * 89.99875 * 8 7 6 10 10 C 1.46897 * 110.99765 * 174.85560 * 9 8 7 11 11 H 1.09001 * 109.46792 * 33.86245 * 10 9 8 12 12 C 1.52997 * 109.46931 * 153.86205 * 10 9 8 13 13 C 1.50699 * 109.47343 * 294.59026 * 12 10 9 14 14 H 1.08001 * 119.99817 * 355.46855 * 13 12 10 15 15 C 1.37880 * 120.00210 * 175.46172 * 13 12 10 16 16 N 1.31508 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99644 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47549 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46622 * 120.00627 * 17 15 13 20 20 H 1.48494 * 109.47117 * 240.00058 * 17 15 13 21 21 C 1.50702 * 109.47309 * 273.86287 * 10 9 8 22 22 C 1.38234 * 119.99975 * 319.72617 * 21 10 9 23 23 C 1.38237 * 120.00021 * 179.78879 * 22 21 10 24 24 C 1.38237 * 119.99882 * 0.44591 * 23 22 21 25 25 C 1.38235 * 119.99609 * 359.80667 * 24 23 22 26 26 C 1.38229 * 120.00488 * 359.97438 * 25 24 23 27 27 O 1.34304 * 108.42377 * 0.26427 * 7 6 5 28 28 H 1.08994 * 109.46941 * 59.99917 * 1 2 3 29 29 H 1.09004 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47365 * 299.99775 * 1 2 3 31 31 H 1.09004 * 109.47379 * 59.99838 * 3 2 1 32 32 H 1.09006 * 109.47064 * 299.99693 * 3 2 1 33 33 H 1.08004 * 126.57687 * 0.02562 * 5 4 3 34 34 H 1.08004 * 126.58078 * 179.83459 * 6 5 4 35 35 H 1.08998 * 109.47467 * 209.99485 * 8 7 6 36 36 H 1.08996 * 109.46901 * 330.00460 * 8 7 6 37 37 H 1.00897 * 111.00326 * 298.81351 * 9 8 7 38 38 H 1.09004 * 109.47439 * 54.59237 * 12 10 9 39 39 H 1.09005 * 109.47149 * 174.59328 * 12 10 9 40 40 H 0.97000 * 119.99875 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99789 * 0.02562 * 22 21 10 42 42 H 1.07994 * 120.00012 * 180.27558 * 23 22 21 43 43 H 1.07997 * 119.99954 * 179.83975 * 24 23 22 44 44 H 1.08005 * 119.99405 * 180.02562 * 25 24 23 45 45 H 1.08006 * 120.00220 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2968 1.1305 -1.0921 6 6 5.6294 1.0180 -0.6335 7 6 5.5807 1.0216 0.7106 8 6 6.7664 0.9261 1.6359 9 7 7.2626 2.2757 1.9368 10 6 8.3419 2.2300 2.9322 11 1 8.9265 1.3206 2.7926 12 6 9.2479 3.4505 2.7584 13 6 9.9444 3.3733 1.4243 14 1 9.8164 2.5029 0.7979 15 6 10.7448 4.4141 1.0031 16 7 10.9009 5.4738 1.7660 17 14 11.6086 4.3179 -0.6504 18 1 11.2723 3.0310 -1.3105 19 1 11.1624 5.4452 -1.5080 20 1 13.0772 4.4017 -0.4473 21 6 7.7485 2.2380 4.3174 22 6 6.6638 3.0469 4.6000 23 6 6.1166 3.0510 5.8695 24 6 6.6600 2.2531 6.8589 25 6 7.7480 1.4480 6.5776 26 6 8.2923 1.4405 5.3070 27 8 4.2959 1.1238 1.0885 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8901 33 1 3.9708 1.1624 -2.1212 34 1 6.5168 0.9474 -1.2452 35 1 6.4665 0.4346 2.5614 36 1 7.5558 0.3474 1.1563 37 1 7.5652 2.7454 1.0966 38 1 8.6467 4.3586 2.8024 39 1 9.9911 3.4678 3.5557 40 1 11.4643 6.2058 1.4699 41 1 6.2413 3.6729 3.8279 42 1 5.2664 3.6797 6.0890 43 1 6.2342 2.2582 7.8513 44 1 8.1723 0.8242 7.3505 45 1 9.1426 0.8118 5.0874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269628354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:13 Heat of formation + Delta-G solvation = -9.003081 kcal Electronic energy + Delta-G solvation = -25487.616888 eV Core-core repulsion = 21857.618244 eV Total energy + Delta-G solvation = -3629.998644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40616 -38.94631 -38.04998 -36.21600 -33.21500 -32.81447 -31.94495 -30.45792 -30.24237 -28.90001 -27.29319 -25.95805 -24.53082 -23.20727 -22.09083 -21.86607 -21.54414 -20.01707 -19.58560 -17.04897 -16.82425 -16.63874 -16.08635 -15.96354 -15.62548 -15.50367 -14.84622 -14.67645 -14.48112 -14.04256 -13.72279 -13.50215 -13.22696 -12.94345 -12.81987 -12.63677 -12.58806 -12.28093 -12.06686 -12.05187 -11.67524 -11.42110 -11.21874 -11.05488 -10.77627 -10.62872 -10.48998 -10.37526 -10.02841 -9.72188 -9.63854 -9.21891 -8.49373 -8.40496 -8.30743 -8.06290 -7.86071 -6.08663 -4.13297 1.71921 1.87652 1.93189 2.66754 2.95752 3.25660 3.34107 3.36102 3.83244 4.30057 4.39268 4.63733 4.80030 4.93136 5.00170 5.07104 5.07911 5.19674 5.23284 5.28915 5.34824 5.36383 5.41282 5.49538 5.59322 5.66931 5.77960 5.93798 6.02844 6.07723 6.11315 6.21558 6.26308 6.43628 6.54639 6.66276 6.69144 6.79370 6.92371 6.99610 7.16330 7.35312 7.38823 7.52945 7.56669 7.86678 7.91594 8.10039 8.26063 8.92681 9.51647 11.01757 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004073 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.395813 B = 6873.656469 C = 9490.944495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.147 3.853 4 C -0.033 4.033 5 C -0.178 4.178 6 C -0.216 4.216 7 C 0.027 3.973 8 C 0.133 3.867 9 N -0.675 5.675 10 C 0.129 3.871 11 H 0.044 0.956 12 C 0.028 3.972 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.056 4.056 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.123 4.123 27 O -0.161 6.161 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.363 0.637 38 H 0.033 0.967 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 -8.958 0.213 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.071 3.929 4 C -0.083 4.083 5 C -0.198 4.198 6 C -0.236 4.236 7 C -0.025 4.025 8 C 0.004 3.996 9 N -0.310 5.310 10 C 0.020 3.980 11 H 0.062 0.938 12 C -0.009 4.009 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.057 4.057 22 C -0.104 4.104 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.146 4.146 26 C -0.142 4.142 27 O -0.057 6.057 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.186 0.814 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.736 -8.802 0.975 18.934 hybrid contribution 1.155 -0.027 -1.618 1.988 sum -15.580 -8.829 -0.643 17.920 Atomic orbital electron populations 1.22773 0.80532 1.03048 1.00179 1.87996 1.19889 1.27264 1.95475 1.20611 0.84885 0.85366 1.02072 1.21709 0.92288 1.09592 0.84746 1.21534 0.92881 1.06342 0.99037 1.21613 0.98138 1.09752 0.94085 1.22523 0.83007 1.02634 0.94294 1.20390 0.89441 0.93078 0.96667 1.60421 1.38786 1.14817 1.17006 1.20653 0.89754 1.01067 0.86557 0.93783 1.19273 0.93272 0.91426 0.96953 1.21153 1.28996 1.03214 1.03237 0.92791 1.24977 0.96491 0.95314 0.97131 1.69970 1.38499 1.07099 1.36963 0.86566 0.79468 0.78057 0.84085 1.19770 1.20934 1.21024 1.20182 0.94863 0.94731 0.95911 1.21051 0.95420 0.97967 0.95934 1.21122 1.00230 0.99668 0.93775 1.20978 0.97532 0.98211 0.98760 1.20967 0.97148 0.99969 0.96541 1.21036 1.00015 0.99864 0.93285 1.83976 1.16767 1.70392 1.34541 0.93834 0.89388 0.93781 0.91464 0.90160 0.83670 0.83345 0.89948 0.92061 0.81436 0.94907 0.95942 0.92883 0.85444 0.86907 0.87097 0.86923 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.53 10.69 -35.23 -0.38 -4.90 16 3 C 0.15 1.60 6.47 36.01 0.23 1.83 16 4 C -0.03 -0.48 6.95 -35.62 -0.25 -0.72 16 5 C -0.18 -2.48 10.81 -39.70 -0.43 -2.91 16 6 C -0.22 -3.26 10.81 -39.71 -0.43 -3.69 16 7 C 0.03 0.44 6.88 -35.62 -0.25 0.19 16 8 C 0.13 2.15 5.98 -4.97 -0.03 2.12 16 9 N -0.68 -12.51 5.52 -109.21 -0.60 -13.12 16 10 C 0.13 2.56 2.19 -68.87 -0.15 2.41 16 11 H 0.04 0.87 7.70 -51.93 -0.40 0.47 16 12 C 0.03 0.69 4.53 -27.89 -0.13 0.56 16 13 C -0.53 -13.84 8.05 -34.44 -0.28 -14.12 16 14 H 0.05 1.36 7.66 -52.49 -0.40 0.96 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 17 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.06 -1.04 4.71 -104.62 -0.49 -1.53 16 22 C -0.09 -1.53 9.32 -39.58 -0.37 -1.90 16 23 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 25 C -0.13 -1.92 10.05 -39.59 -0.40 -2.31 16 26 C -0.12 -2.07 9.67 -39.59 -0.38 -2.46 16 27 O -0.16 -2.69 10.65 5.70 0.06 -2.63 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.08 1.32 7.96 -51.93 -0.41 0.90 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.36 7.29 7.37 -39.29 -0.29 7.00 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.13 2.37 7.73 -52.49 -0.41 1.97 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.80 8.04 -52.48 -0.42 1.37 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -30.52 384.17 -9.50 -40.03 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.96 Total: 8.40 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -3.12 Total: -24.38 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.13 Total: -38.12 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.32 Total: -7.53 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.52 -9.50 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269628354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.022 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds