Wall clock time and date at job start Tue Mar 31 2020 11:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99741 * 2 1 4 4 C 1.50700 * 109.46956 * 180.02562 * 3 2 1 5 5 C 1.34517 * 125.79241 * 90.30890 * 4 3 2 6 6 C 1.41376 * 106.84134 * 180.18534 * 5 4 3 7 7 C 1.34506 * 106.84180 * 359.57336 * 6 5 4 8 8 C 1.50707 * 125.79129 * 180.22311 * 7 6 5 9 9 N 1.46908 * 109.46711 * 89.99875 * 8 7 6 10 10 C 1.46897 * 110.99765 * 174.85560 * 9 8 7 11 11 H 1.09001 * 109.46792 * 33.86245 * 10 9 8 12 12 C 1.52997 * 109.46931 * 153.86205 * 10 9 8 13 13 C 1.50699 * 109.47343 * 294.59026 * 12 10 9 14 14 H 1.08001 * 119.99817 * 355.46855 * 13 12 10 15 15 C 1.37880 * 120.00210 * 175.46172 * 13 12 10 16 16 N 1.31508 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99644 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47549 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46622 * 120.00627 * 17 15 13 20 20 H 1.48494 * 109.47117 * 240.00058 * 17 15 13 21 21 C 1.50702 * 109.47309 * 273.86287 * 10 9 8 22 22 C 1.38234 * 119.99975 * 319.72617 * 21 10 9 23 23 C 1.38237 * 120.00021 * 179.78879 * 22 21 10 24 24 C 1.38237 * 119.99882 * 0.44591 * 23 22 21 25 25 C 1.38235 * 119.99609 * 359.80667 * 24 23 22 26 26 C 1.38229 * 120.00488 * 359.97438 * 25 24 23 27 27 O 1.34304 * 108.42377 * 0.26427 * 7 6 5 28 28 H 1.08994 * 109.46941 * 59.99917 * 1 2 3 29 29 H 1.09004 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47365 * 299.99775 * 1 2 3 31 31 H 1.09004 * 109.47379 * 59.99838 * 3 2 1 32 32 H 1.09006 * 109.47064 * 299.99693 * 3 2 1 33 33 H 1.08004 * 126.57687 * 0.02562 * 5 4 3 34 34 H 1.08004 * 126.58078 * 179.83459 * 6 5 4 35 35 H 1.08998 * 109.47467 * 209.99485 * 8 7 6 36 36 H 1.08996 * 109.46901 * 330.00460 * 8 7 6 37 37 H 1.00897 * 111.00326 * 298.81351 * 9 8 7 38 38 H 1.09004 * 109.47439 * 54.59237 * 12 10 9 39 39 H 1.09005 * 109.47149 * 174.59328 * 12 10 9 40 40 H 0.97000 * 119.99875 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99789 * 0.02562 * 22 21 10 42 42 H 1.07994 * 120.00012 * 180.27558 * 23 22 21 43 43 H 1.07997 * 119.99954 * 179.83975 * 24 23 22 44 44 H 1.08005 * 119.99405 * 180.02562 * 25 24 23 45 45 H 1.08006 * 120.00220 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2968 1.1305 -1.0921 6 6 5.6294 1.0180 -0.6335 7 6 5.5807 1.0216 0.7106 8 6 6.7664 0.9261 1.6359 9 7 7.2626 2.2757 1.9368 10 6 8.3419 2.2300 2.9322 11 1 8.9265 1.3206 2.7926 12 6 9.2479 3.4505 2.7584 13 6 9.9444 3.3733 1.4243 14 1 9.8164 2.5029 0.7979 15 6 10.7448 4.4141 1.0031 16 7 10.9009 5.4738 1.7660 17 14 11.6086 4.3179 -0.6504 18 1 11.2723 3.0310 -1.3105 19 1 11.1624 5.4452 -1.5080 20 1 13.0772 4.4017 -0.4473 21 6 7.7485 2.2380 4.3174 22 6 6.6638 3.0469 4.6000 23 6 6.1166 3.0510 5.8695 24 6 6.6600 2.2531 6.8589 25 6 7.7480 1.4480 6.5776 26 6 8.2923 1.4405 5.3070 27 8 4.2959 1.1238 1.0885 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8901 33 1 3.9708 1.1624 -2.1212 34 1 6.5168 0.9474 -1.2452 35 1 6.4665 0.4346 2.5614 36 1 7.5558 0.3474 1.1563 37 1 7.5652 2.7454 1.0966 38 1 8.6467 4.3586 2.8024 39 1 9.9911 3.4678 3.5557 40 1 11.4643 6.2058 1.4699 41 1 6.2413 3.6729 3.8279 42 1 5.2664 3.6797 6.0890 43 1 6.2342 2.2582 7.8513 44 1 8.1723 0.8242 7.3505 45 1 9.1426 0.8118 5.0874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269628354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:12 Heat of formation + Delta-G solvation = -26.364073 kcal Electronic energy + Delta-G solvation = -25488.369717 eV Core-core repulsion = 21857.618244 eV Total energy + Delta-G solvation = -3630.751474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.56123 -40.29310 -38.82712 -37.68631 -35.04017 -34.05930 -33.36758 -31.68858 -31.39934 -30.52799 -28.41586 -26.96816 -26.06881 -24.41748 -23.67836 -23.22998 -22.69444 -21.19570 -21.04450 -18.60279 -18.08454 -17.74936 -17.47174 -16.87497 -16.76038 -16.68650 -16.37410 -16.12407 -15.94157 -15.25204 -14.87288 -14.79107 -14.57999 -14.34622 -14.08983 -13.82630 -13.75526 -13.51143 -13.47764 -13.25314 -12.97441 -12.88036 -12.65235 -12.46805 -12.37482 -12.29024 -11.99112 -11.77564 -11.45849 -11.16380 -10.86897 -10.74360 -10.59504 -9.69086 -9.53580 -9.44181 -9.26830 -8.19257 -6.30886 0.55590 0.62355 0.65710 1.40254 1.41653 1.53089 1.54940 1.87991 2.40241 3.00290 3.03414 3.13111 3.42529 3.71414 3.92730 4.08361 4.09075 4.11838 4.19406 4.24622 4.28801 4.39901 4.42006 4.47553 4.53563 4.57419 4.59188 4.78437 4.80106 4.83597 4.87051 4.88269 5.01490 5.10584 5.21695 5.29770 5.41591 5.47666 5.56690 5.67387 5.72458 5.80061 5.84297 6.10272 6.16166 6.19519 6.25612 6.29592 6.51307 6.84170 7.38436 8.92179 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004073 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.395813 B = 6873.656469 C = 9490.944495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.147 3.853 4 C -0.041 4.041 5 C -0.185 4.185 6 C -0.217 4.217 7 C 0.001 3.999 8 C 0.141 3.859 9 N -0.677 5.677 10 C 0.143 3.857 11 H 0.044 0.956 12 C 0.041 3.959 13 C -0.533 4.533 14 H 0.063 0.937 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.260 1.260 19 H -0.281 1.281 20 H -0.283 1.283 21 C -0.080 4.080 22 C -0.106 4.106 23 C -0.133 4.133 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.137 4.137 27 O -0.183 6.183 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.352 0.648 38 H -0.001 1.001 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 -10.208 -0.035 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.071 3.929 4 C -0.091 4.091 5 C -0.204 4.204 6 C -0.237 4.237 7 C -0.049 4.049 8 C 0.013 3.987 9 N -0.310 5.310 10 C 0.034 3.966 11 H 0.062 0.938 12 C 0.004 3.996 13 C -0.571 4.571 14 H 0.081 0.919 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.209 1.209 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.155 4.155 27 O -0.080 6.080 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.017 0.983 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.110 -10.077 0.729 20.738 hybrid contribution 1.467 0.344 -1.474 2.108 sum -16.643 -9.733 -0.745 19.294 Atomic orbital electron populations 1.23000 0.78367 1.04198 1.01516 1.87939 1.22265 1.27621 1.95756 1.20805 0.82727 0.85583 1.03801 1.22519 0.93914 1.08341 0.84292 1.21883 0.92164 1.06050 1.00317 1.21891 0.99287 1.08711 0.93820 1.22494 0.83018 1.04697 0.94735 1.20305 0.89912 0.91602 0.96924 1.60409 1.37958 1.16529 1.16150 1.20322 0.89557 0.98395 0.88309 0.93848 1.19021 0.92797 0.92326 0.95482 1.21509 1.28501 1.03311 1.03766 0.91894 1.25878 0.97398 0.94961 1.00939 1.70111 1.39645 1.08031 1.39104 0.85458 0.77991 0.78503 0.79444 1.18330 1.20696 1.20853 1.20113 0.95939 0.96528 0.95482 1.21027 0.96074 0.98420 0.96929 1.21411 1.00720 1.00028 0.92952 1.21417 0.96823 0.96698 0.99928 1.21363 0.96823 0.99835 0.96276 1.21240 1.00428 0.99917 0.93940 1.83954 1.17149 1.70932 1.35951 0.91996 0.88425 0.92911 0.90845 0.87246 0.81000 0.82321 0.90076 0.91034 0.82758 0.98260 0.98989 0.92849 0.87337 0.84667 0.83488 0.83687 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -9.09 10.69 -148.98 -1.59 -10.68 16 3 C 0.15 2.96 6.47 71.24 0.46 3.42 16 4 C -0.04 -1.14 6.95 24.83 0.17 -0.97 16 5 C -0.19 -4.92 10.81 22.19 0.24 -4.68 16 6 C -0.22 -6.46 10.81 22.19 0.24 -6.22 16 7 C 0.00 0.05 6.88 24.83 0.17 0.22 16 8 C 0.14 4.66 5.98 85.56 0.51 5.18 16 9 N -0.68 -26.18 5.52 -499.45 -2.76 -28.94 16 10 C 0.14 5.96 2.19 44.17 0.10 6.05 16 11 H 0.04 1.77 7.70 -2.39 -0.02 1.75 16 12 C 0.04 2.13 4.53 29.85 0.14 2.27 16 13 C -0.53 -28.75 8.05 25.60 0.21 -28.54 16 14 H 0.06 3.21 7.66 -2.91 -0.02 3.19 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 17 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 C -0.08 -3.05 4.71 -19.87 -0.09 -3.14 16 22 C -0.11 -3.92 9.32 22.27 0.21 -3.72 16 23 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 24 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 26 C -0.14 -4.56 9.67 22.27 0.22 -4.34 16 27 O -0.18 -6.18 10.65 -2.52 -0.03 -6.21 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.35 14.74 7.37 -89.70 -0.66 14.08 16 38 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 39 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.11 4.32 7.73 -2.91 -0.02 4.29 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 44 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 45 H 0.12 3.79 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -68.29 384.17 3.19 -65.10 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.31 Total: 33.28 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 4.94 Total: -42.37 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.47 Total: -84.37 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.62 Total: -16.89 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.29 3.19 -65.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269628354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.735 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds