Wall clock time and date at job start Tue Mar 31 2020 12:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46829 * 300.00140 * 3 2 1 6 6 H 1.48495 * 109.47037 * 60.00363 * 3 2 1 7 7 C 1.37879 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00300 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99556 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46960 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47383 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00474 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99889 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99531 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47242 * 180.02562 * 17 16 15 19 19 C 1.34237 * 126.50421 * 264.69198 * 18 17 16 20 20 N 1.36830 * 109.92857 * 179.82892 * 19 18 17 21 21 H 0.97000 * 125.06168 * 180.18412 * 20 19 18 22 22 C 1.37687 * 109.87693 * 0.44438 * 20 19 18 23 23 C 1.39130 * 133.51064 * 179.70956 * 22 20 19 24 24 C 1.37749 * 119.77650 * 180.02562 * 23 22 20 25 25 C 1.38828 * 120.66718 * 359.97438 * 24 23 22 26 26 C 1.36619 * 120.52903 * 0.02562 * 25 24 23 27 27 C 1.39632 * 119.76544 * 359.97438 * 26 25 24 28 28 H 0.97001 * 120.00261 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47510 * 59.99802 * 9 7 2 30 30 H 1.08999 * 109.47165 * 299.99380 * 9 7 2 31 31 H 1.08999 * 109.47710 * 59.99365 * 10 9 7 32 32 H 1.09007 * 109.46967 * 299.99575 * 10 9 7 33 33 H 0.96998 * 119.99761 * 359.97438 * 11 10 9 34 34 H 0.96992 * 120.00503 * 359.97438 * 14 12 11 35 35 H 1.09001 * 109.46891 * 60.00097 * 15 14 12 36 36 H 1.08993 * 109.47378 * 299.99469 * 15 14 12 37 37 H 1.09001 * 109.46801 * 300.00349 * 16 15 14 38 38 H 1.09001 * 109.46998 * 59.99945 * 16 15 14 39 39 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 40 40 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 41 41 H 1.08002 * 125.03330 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.10752 * 0.02562 * 23 22 20 43 43 H 1.07996 * 119.66217 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.73185 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.11524 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1867 -6.0980 -0.0028 13 8 3.4026 -6.0980 -0.0014 14 7 1.5128 -7.2652 -0.0039 15 6 2.2454 -8.5339 -0.0040 16 6 1.2512 -9.6969 -0.0047 17 6 2.0162 -11.0219 -0.0042 18 6 1.0370 -12.1673 -0.0055 19 6 0.5928 -12.8394 1.0683 20 7 -0.2893 -13.8102 0.6788 21 1 -0.7443 -14.4225 1.2779 22 6 -0.4304 -13.7924 -0.6907 23 6 -1.1791 -14.5492 -1.5864 24 6 -1.1050 -14.2829 -2.9359 25 6 -0.2903 -13.2651 -3.4131 26 6 0.4533 -12.5096 -2.5513 27 6 0.3934 -12.7623 -1.1793 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6241 -2.5575 0.8880 31 1 2.8714 -3.6047 0.8889 32 1 2.8726 -3.6039 -0.8910 33 1 0.5429 -4.9308 -0.0039 34 1 0.5429 -7.2652 -0.0046 35 1 2.8714 -8.5920 0.8864 36 1 2.8726 -8.5912 -0.8935 37 1 0.6242 -9.6393 0.8851 38 1 0.6248 -9.6389 -0.8949 39 1 2.6435 -11.0795 -0.8937 40 1 2.6422 -11.0796 0.8863 41 1 0.8863 -12.6415 2.0887 42 1 -1.8161 -15.3429 -1.2249 43 1 -1.6872 -14.8713 -3.6295 44 1 -0.2440 -13.0691 -4.4742 45 1 1.0851 -11.7197 -2.9298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273111450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:02 Heat of formation + Delta-G solvation = 2.552062 kcal Electronic energy + Delta-G solvation = -23938.575125 eV Core-core repulsion = 20341.370300 eV Total energy + Delta-G solvation = -3597.204825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58442 -39.48535 -37.27100 -36.13826 -34.69452 -33.65162 -32.76549 -31.39800 -29.80756 -29.54747 -28.79372 -25.88109 -24.36293 -23.15743 -22.09208 -21.95164 -21.00477 -20.49602 -19.59594 -18.12372 -17.84287 -16.74492 -16.34590 -15.87911 -15.78062 -15.60027 -14.85562 -14.76997 -14.47942 -14.34921 -14.11047 -14.00724 -13.56288 -13.41518 -13.07970 -12.92953 -12.43834 -12.34086 -12.22973 -11.95616 -11.81453 -11.54185 -11.14159 -11.11945 -11.01844 -10.85047 -10.58631 -10.27803 -9.92989 -9.83293 -9.51417 -9.20844 -8.92730 -8.53732 -8.45124 -8.17931 -7.95648 -6.06386 -4.08692 0.81702 1.32692 2.33142 2.78206 3.16244 3.30754 3.38325 3.44149 3.61966 3.67915 4.38700 4.42591 4.45657 4.58928 4.75103 4.76342 4.84023 4.90683 5.08826 5.13258 5.19026 5.26983 5.30820 5.42520 5.50415 5.58619 5.62984 5.74687 5.80860 6.04207 6.06657 6.19778 6.31725 6.35873 6.40293 6.45084 6.47824 6.70837 6.83060 6.85273 7.07065 7.17328 7.32116 7.61657 7.67575 7.93373 8.30135 8.51315 8.96928 9.07890 9.55944 11.05359 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.001664 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.102103 B =16826.522211 C =17182.878283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.740 5.740 12 C 0.697 3.303 13 O -0.600 6.600 14 N -0.754 5.754 15 C 0.139 3.861 16 C -0.124 4.124 17 C -0.041 4.041 18 C -0.164 4.164 19 C 0.050 3.950 20 N -0.597 5.597 21 H 0.415 0.585 22 C 0.094 3.906 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.148 4.148 26 C -0.068 4.068 27 C -0.102 4.102 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.393 0.607 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.170 0.830 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -33.003 -0.742 33.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.397 3.603 13 O -0.479 6.479 14 N -0.411 5.411 15 C 0.015 3.985 16 C -0.162 4.162 17 C -0.079 4.079 18 C -0.172 4.172 19 C -0.075 4.075 20 N -0.200 5.200 21 H 0.251 0.749 22 C -0.013 4.013 23 C -0.154 4.154 24 C -0.119 4.119 25 C -0.168 4.168 26 C -0.086 4.086 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.187 0.813 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.228 -32.916 -0.628 33.079 hybrid contribution -0.891 0.587 0.344 1.121 sum -4.119 -32.329 -0.284 32.591 Atomic orbital electron populations 1.69964 1.06089 1.26701 1.50629 1.25001 0.94894 0.99413 0.95064 0.86455 0.80199 0.83344 0.77562 1.19558 1.20972 1.20976 1.21104 0.93329 0.90366 1.50998 0.92144 1.19336 0.94287 0.91129 0.97806 1.21576 0.95616 0.80469 1.00609 1.45535 1.09816 1.05373 1.78626 1.16081 0.85648 0.80533 0.78034 1.90882 1.11818 1.86729 1.58456 1.45139 1.09436 1.04830 1.81717 1.21132 0.94145 0.81127 1.02132 1.21780 0.98331 0.93103 1.02985 1.19800 0.95201 0.89905 1.03025 1.20234 1.04515 1.01483 0.90922 1.21656 0.94800 0.91785 0.99306 1.41728 1.40471 1.32276 1.05492 0.74865 1.18277 1.00463 0.99109 0.83473 1.20021 1.01864 1.01140 0.92387 1.20814 0.98956 0.97909 0.94198 1.20659 0.99010 0.97401 0.99694 1.20330 0.98419 0.98891 0.91001 1.19113 1.00252 0.97857 0.93407 0.92952 0.95956 0.95977 0.92829 0.92827 0.77436 0.77324 0.91920 0.91886 0.91371 0.91231 0.90780 0.90813 0.81305 0.86452 0.85868 0.86028 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 11 N -0.74 -13.55 5.56 -65.22 -0.36 -13.91 16 12 C 0.70 12.67 8.57 -86.92 -0.74 11.92 16 13 O -0.60 -13.36 16.34 5.29 0.09 -13.27 16 14 N -0.75 -9.88 5.56 -65.22 -0.36 -10.25 16 15 C 0.14 1.55 5.67 -4.04 -0.02 1.53 16 16 C -0.12 -1.01 5.31 -26.73 -0.14 -1.15 16 17 C -0.04 -0.30 5.75 -27.89 -0.16 -0.46 16 18 C -0.16 -1.37 5.57 -102.71 -0.57 -1.94 16 19 C 0.05 0.33 11.73 -16.73 -0.20 0.14 16 20 N -0.60 -3.84 6.07 -10.65 -0.06 -3.90 16 21 H 0.41 1.43 8.96 -40.82 -0.37 1.06 16 22 C 0.09 0.81 7.28 -83.99 -0.61 0.20 16 23 C -0.13 -1.01 10.08 -39.43 -0.40 -1.41 16 24 C -0.10 -0.73 10.01 -39.54 -0.40 -1.13 16 25 C -0.15 -1.18 9.97 -39.95 -0.40 -1.58 16 26 C -0.07 -0.61 10.05 -39.65 -0.40 -1.01 16 27 C -0.10 -0.97 6.35 -105.14 -0.67 -1.64 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.39 6.17 8.49 -40.82 -0.35 5.82 16 34 H 0.39 4.08 8.49 -40.82 -0.35 3.73 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -35.24 382.98 -11.44 -46.68 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.94 Total: 4.62 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -5.28 Total: -6.67 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.05 Total: -53.69 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.24 -11.44 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273111450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.235 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds