Wall clock time and date at job start Tue Mar 31 2020 12:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46829 * 300.00140 * 3 2 1 6 6 H 1.48495 * 109.47037 * 60.00363 * 3 2 1 7 7 C 1.37879 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00300 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99556 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46960 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47383 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00474 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99889 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99531 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47242 * 180.02562 * 17 16 15 19 19 C 1.34237 * 126.50421 * 264.69198 * 18 17 16 20 20 N 1.36830 * 109.92857 * 179.82892 * 19 18 17 21 21 H 0.97000 * 125.06168 * 180.18412 * 20 19 18 22 22 C 1.37687 * 109.87693 * 0.44438 * 20 19 18 23 23 C 1.39130 * 133.51064 * 179.70956 * 22 20 19 24 24 C 1.37749 * 119.77650 * 180.02562 * 23 22 20 25 25 C 1.38828 * 120.66718 * 359.97438 * 24 23 22 26 26 C 1.36619 * 120.52903 * 0.02562 * 25 24 23 27 27 C 1.39632 * 119.76544 * 359.97438 * 26 25 24 28 28 H 0.97001 * 120.00261 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47510 * 59.99802 * 9 7 2 30 30 H 1.08999 * 109.47165 * 299.99380 * 9 7 2 31 31 H 1.08999 * 109.47710 * 59.99365 * 10 9 7 32 32 H 1.09007 * 109.46967 * 299.99575 * 10 9 7 33 33 H 0.96998 * 119.99761 * 359.97438 * 11 10 9 34 34 H 0.96992 * 120.00503 * 359.97438 * 14 12 11 35 35 H 1.09001 * 109.46891 * 60.00097 * 15 14 12 36 36 H 1.08993 * 109.47378 * 299.99469 * 15 14 12 37 37 H 1.09001 * 109.46801 * 300.00349 * 16 15 14 38 38 H 1.09001 * 109.46998 * 59.99945 * 16 15 14 39 39 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 40 40 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 41 41 H 1.08002 * 125.03330 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.10752 * 0.02562 * 23 22 20 43 43 H 1.07996 * 119.66217 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.73185 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.11524 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1867 -6.0980 -0.0028 13 8 3.4026 -6.0980 -0.0014 14 7 1.5128 -7.2652 -0.0039 15 6 2.2454 -8.5339 -0.0040 16 6 1.2512 -9.6969 -0.0047 17 6 2.0162 -11.0219 -0.0042 18 6 1.0370 -12.1673 -0.0055 19 6 0.5928 -12.8394 1.0683 20 7 -0.2893 -13.8102 0.6788 21 1 -0.7443 -14.4225 1.2779 22 6 -0.4304 -13.7924 -0.6907 23 6 -1.1791 -14.5492 -1.5864 24 6 -1.1050 -14.2829 -2.9359 25 6 -0.2903 -13.2651 -3.4131 26 6 0.4533 -12.5096 -2.5513 27 6 0.3934 -12.7623 -1.1793 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6241 -2.5575 0.8880 31 1 2.8714 -3.6047 0.8889 32 1 2.8726 -3.6039 -0.8910 33 1 0.5429 -4.9308 -0.0039 34 1 0.5429 -7.2652 -0.0046 35 1 2.8714 -8.5920 0.8864 36 1 2.8726 -8.5912 -0.8935 37 1 0.6242 -9.6393 0.8851 38 1 0.6248 -9.6389 -0.8949 39 1 2.6435 -11.0795 -0.8937 40 1 2.6422 -11.0796 0.8863 41 1 0.8863 -12.6415 2.0887 42 1 -1.8161 -15.3429 -1.2249 43 1 -1.6872 -14.8713 -3.6295 44 1 -0.2440 -13.0691 -4.4742 45 1 1.0851 -11.7197 -2.9298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273111450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:01 Heat of formation + Delta-G solvation = -20.143718 kcal Electronic energy + Delta-G solvation = -23939.559288 eV Core-core repulsion = 20341.370300 eV Total energy + Delta-G solvation = -3598.188988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11537 -40.93519 -37.82661 -37.19331 -36.35144 -34.86084 -34.48980 -32.24266 -31.28425 -30.21719 -29.64610 -27.10344 -25.94606 -23.70592 -23.05580 -22.65631 -22.58301 -21.95267 -20.20613 -19.28930 -18.65714 -18.39471 -17.30962 -17.14232 -16.86069 -16.47512 -16.30345 -15.92035 -15.45528 -15.37222 -15.12155 -15.01472 -14.80847 -14.59939 -14.26941 -13.84506 -13.72254 -13.19831 -13.11787 -13.07669 -12.92072 -12.52101 -12.49721 -12.45050 -12.25857 -12.21786 -11.74791 -11.66391 -11.48301 -11.46125 -11.18573 -10.59918 -10.45440 -10.30503 -9.67087 -9.10557 -8.50017 -8.22908 -6.33014 0.25585 0.73880 1.42289 1.43050 1.56431 1.72203 1.90742 2.20212 2.32924 2.42857 3.02322 3.11914 3.44367 3.84589 3.89846 3.98844 4.18322 4.25450 4.36955 4.45540 4.49226 4.50764 4.54137 4.56382 4.70235 4.79981 4.86358 4.88410 4.94547 5.00971 5.08577 5.17270 5.32603 5.37951 5.40939 5.53485 5.58521 5.61150 5.63347 5.74949 5.80736 5.84974 5.91212 6.09470 6.18975 6.29929 6.76994 6.80427 7.17057 7.36337 7.63715 8.89237 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.001664 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.102103 B =16826.522211 C =17182.878283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.735 5.735 12 C 0.695 3.305 13 O -0.642 6.642 14 N -0.734 5.734 15 C 0.139 3.861 16 C -0.107 4.107 17 C -0.035 4.035 18 C -0.191 4.191 19 C 0.061 3.939 20 N -0.589 5.589 21 H 0.429 0.571 22 C 0.074 3.926 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.157 4.157 26 C -0.090 4.090 27 C -0.127 4.127 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.407 0.593 34 H 0.410 0.590 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.200 0.800 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.135 0.865 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 -34.003 -0.072 34.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.390 5.390 12 C 0.395 3.605 13 O -0.524 6.524 14 N -0.391 5.391 15 C 0.015 3.985 16 C -0.145 4.145 17 C -0.073 4.073 18 C -0.198 4.198 19 C -0.066 4.066 20 N -0.193 5.193 21 H 0.268 0.732 22 C -0.034 4.034 23 C -0.159 4.159 24 C -0.128 4.128 25 C -0.176 4.176 26 C -0.109 4.109 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.242 0.758 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.217 0.783 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.776 -33.977 0.049 34.186 hybrid contribution -0.785 0.797 0.134 1.127 sum -4.561 -33.180 0.183 33.493 Atomic orbital electron populations 1.70062 1.07529 1.27914 1.51129 1.25877 0.95815 1.03107 0.94439 0.85378 0.78967 0.78709 0.77877 1.18971 1.20241 1.20189 1.21502 0.93629 0.91906 1.51365 0.92284 1.19141 0.94254 0.91681 0.96385 1.21066 0.94623 0.81176 0.99554 1.45229 1.10374 1.04489 1.78867 1.16212 0.85163 0.81360 0.77753 1.90854 1.13820 1.87409 1.60364 1.45020 1.10328 1.03902 1.79812 1.21280 0.94798 0.80952 1.01499 1.21642 0.97495 0.92087 1.03269 1.19727 0.95051 0.89240 1.03319 1.20349 1.05708 1.02563 0.91181 1.22145 0.93526 0.90677 1.00234 1.41779 1.40176 1.32312 1.05006 0.73216 1.18536 1.00890 0.99400 0.84557 1.20343 1.01717 1.01353 0.92451 1.21136 0.99004 0.97938 0.94750 1.20926 0.98845 0.97434 1.00370 1.20495 0.99307 0.99641 0.91425 1.19451 1.01025 0.98698 0.93978 0.92560 0.97289 0.97232 0.93841 0.93945 0.75800 0.75396 0.92240 0.92902 0.90333 0.91581 0.91489 0.89577 0.78323 0.84397 0.83722 0.84757 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 2 C 0.01 0.35 5.46 84.66 0.46 0.82 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.18 5.09 29.85 0.15 1.33 16 10 C 0.16 7.16 5.61 86.38 0.48 7.65 16 11 N -0.73 -26.71 5.56 -478.52 -2.66 -29.37 16 12 C 0.70 24.98 8.57 179.06 1.53 26.51 16 13 O -0.64 -28.74 16.34 -4.00 -0.07 -28.81 16 14 N -0.73 -18.40 5.56 -478.52 -2.66 -21.06 16 15 C 0.14 2.96 5.67 86.38 0.49 3.45 16 16 C -0.11 -1.59 5.31 30.60 0.16 -1.43 16 17 C -0.03 -0.48 5.75 29.85 0.17 -0.31 16 18 C -0.19 -2.96 5.57 -18.63 -0.10 -3.07 16 19 C 0.06 0.68 11.73 83.00 0.97 1.65 16 20 N -0.59 -6.48 6.07 -187.61 -1.14 -7.62 16 21 H 0.43 2.02 8.96 -92.71 -0.83 1.19 16 22 C 0.07 1.20 7.28 39.03 0.28 1.48 16 23 C -0.14 -1.92 10.08 22.37 0.23 -1.70 16 24 C -0.11 -1.50 10.01 22.30 0.22 -1.27 16 25 C -0.16 -2.46 9.97 22.03 0.22 -2.24 16 26 C -0.09 -1.64 10.05 22.23 0.22 -1.42 16 27 C -0.13 -2.38 6.35 -20.20 -0.13 -2.51 16 28 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.41 12.48 8.49 -92.71 -0.79 11.69 16 34 H 0.41 7.76 8.49 -92.71 -0.79 6.97 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -75.74 382.98 0.00 -75.74 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -1.39 Total: 21.20 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.61 Total: -1.74 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -6.18 Total: -112.44 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.07 Total: -28.81 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.74 0.00 -75.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273111450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.596 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds