Wall clock time and date at job start Tue Mar 31 2020 10:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46942 * 2 1 4 4 C 1.35744 * 116.99842 * 180.02562 * 3 2 1 5 5 C 1.39056 * 119.88185 * 0.02562 * 4 3 2 6 6 C 1.37628 * 120.11471 * 179.97438 * 5 4 3 7 7 C 1.40029 * 119.88484 * 0.02562 * 6 5 4 8 8 C 1.46946 * 120.11659 * 180.02562 * 7 6 5 9 9 C 1.35135 * 120.00217 * 0.02562 * 8 7 6 10 10 C 1.41796 * 120.00090 * 179.97438 * 9 8 7 11 11 O 1.21780 * 120.00186 * 353.68327 * 10 9 8 12 12 N 1.34776 * 119.99957 * 173.68262 * 10 9 8 13 13 C 1.36754 * 120.00007 * 183.68796 * 12 10 9 14 14 H 1.07999 * 119.99961 * 7.48078 * 13 12 10 15 15 C 1.39092 * 119.99680 * 187.47253 * 13 12 10 16 16 N 1.31345 * 120.00305 * 32.30145 * 15 13 12 17 17 Si 1.86805 * 119.99927 * 212.29301 * 15 13 12 18 18 H 1.48498 * 109.46770 * 95.00447 * 17 15 13 19 19 H 1.48500 * 109.47249 * 215.00361 * 17 15 13 20 20 H 1.48500 * 109.47116 * 335.00361 * 17 15 13 21 21 C 1.46498 * 120.00359 * 3.69008 * 12 10 9 22 22 C 1.53003 * 117.49505 * 311.14842 * 21 12 10 23 23 C 1.52999 * 117.50046 * 242.49054 * 21 12 10 24 24 C 1.39989 * 119.76633 * 359.97438 * 7 6 5 25 25 C 1.37678 * 119.88003 * 359.75215 * 24 7 6 26 26 C 1.50700 * 119.93983 * 180.27450 * 25 24 7 27 27 H 1.08996 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47136 * 299.99862 * 1 2 3 29 29 H 1.08999 * 109.47231 * 60.00096 * 1 2 3 30 30 H 1.09000 * 109.46626 * 240.00256 * 2 1 3 31 31 H 1.08998 * 109.46777 * 120.00522 * 2 1 3 32 32 H 1.07993 * 119.94046 * 359.95533 * 5 4 3 33 33 H 1.08003 * 120.05484 * 179.97438 * 6 5 4 34 34 H 1.07995 * 119.99978 * 179.97438 * 8 7 6 35 35 H 1.08006 * 119.99840 * 359.97438 * 9 8 7 36 36 H 0.96995 * 119.99529 * 179.97438 * 16 15 13 37 37 H 1.08998 * 115.55361 * 96.81204 * 21 12 10 38 38 H 1.09004 * 117.50260 * 359.97438 * 22 21 12 39 39 H 1.08997 * 117.50385 * 145.02331 * 22 21 12 40 40 H 1.09003 * 117.49423 * 214.97655 * 23 21 12 41 41 H 1.09003 * 117.49902 * 359.96807 * 23 21 12 42 42 H 1.07995 * 120.06165 * 179.97438 * 24 7 6 43 43 H 1.09004 * 109.47054 * 270.22896 * 26 25 24 44 44 H 1.08993 * 109.47287 * 30.22993 * 26 25 24 45 45 H 1.09005 * 109.47162 * 150.23121 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3521 1.5252 -0.0005 5 6 4.1969 0.4206 -0.0016 6 6 5.5620 0.5954 -0.0027 7 6 6.0999 1.8883 -0.0022 8 6 7.5567 2.0808 -0.0039 9 6 8.3799 1.0092 -0.0065 10 6 9.7856 1.1950 -0.0087 11 8 10.2518 2.3141 -0.1243 12 7 10.6059 0.1330 0.1171 13 6 11.9588 0.3189 0.1909 14 1 12.3631 1.3172 0.2701 15 6 12.8139 -0.7778 0.1640 16 7 12.4887 -1.8474 -0.5253 17 14 14.4251 -0.7292 1.1082 18 1 14.2368 -1.3566 2.4408 19 1 15.4642 -1.4740 0.3527 20 1 14.8549 0.6816 1.2815 21 6 10.0484 -1.2205 0.1749 22 6 8.8906 -1.4668 1.1443 23 6 10.2811 -2.0264 1.4545 24 6 5.2449 2.9967 -0.0011 25 6 3.8808 2.8107 -0.0057 26 6 2.9591 4.0030 -0.0108 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7810 -0.5760 -0.0013 33 1 6.2173 -0.2631 -0.0031 34 1 7.9695 3.0788 -0.0039 35 1 7.9671 0.0111 -0.0069 36 1 13.0853 -2.6120 -0.5443 37 1 10.0393 -1.7660 -0.7688 38 1 8.5439 -0.6218 1.7394 39 1 8.1200 -2.1745 0.8386 40 1 10.4249 -3.1021 1.3525 41 1 10.8495 -1.5498 2.2531 42 1 5.6546 3.9960 -0.0003 43 1 2.7365 4.2946 1.0156 44 1 3.4412 4.8327 -0.5277 45 1 2.0329 3.7442 -0.5240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274674593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:26 Heat of formation + Delta-G solvation = 5.382725 kcal Electronic energy + Delta-G solvation = -25553.592325 eV Core-core repulsion = 21924.217496 eV Total energy + Delta-G solvation = -3629.374829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.27751 -39.09328 -37.73366 -36.15818 -34.00937 -33.15296 -31.98785 -31.68157 -31.23714 -29.09335 -26.67186 -25.52483 -24.16925 -23.29313 -21.72871 -21.61924 -21.38806 -20.00879 -18.29811 -17.81925 -17.16638 -16.48586 -16.30378 -15.67862 -15.18562 -14.82569 -14.56472 -14.32360 -14.02251 -13.96786 -13.65121 -13.22531 -13.09490 -12.89953 -12.87085 -12.81979 -12.56066 -12.21611 -11.97594 -11.88113 -11.65342 -11.48274 -11.20058 -11.04853 -11.01103 -10.87803 -10.57551 -10.44990 -10.35607 -9.99115 -9.48851 -9.34047 -8.89116 -8.74725 -8.34428 -7.90740 -7.46344 -6.56850 -3.75717 0.96934 1.40655 2.45517 3.07295 3.13328 3.21610 3.27362 3.89792 4.04714 4.41128 4.55608 4.64465 4.64713 4.70713 4.75650 4.88428 4.96358 5.06275 5.14580 5.18432 5.33943 5.41365 5.48239 5.53071 5.58898 5.63341 5.64904 5.70734 5.73960 5.82021 5.91001 5.94959 6.12282 6.19630 6.31733 6.35716 6.44414 6.55102 6.57246 6.77125 6.82649 6.99197 7.09290 7.16850 7.37765 7.44921 8.05152 8.41381 9.13042 9.35417 10.00822 10.48710 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.002748 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.361637 B =10186.142480 C =11105.974769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.315 6.315 4 C 0.118 3.882 5 C -0.202 4.202 6 C -0.081 4.081 7 C -0.073 4.073 8 C -0.089 4.089 9 C -0.164 4.164 10 C 0.454 3.546 11 O -0.604 6.604 12 N -0.401 5.401 13 C -0.313 4.313 14 H 0.111 0.889 15 C 0.046 3.954 16 N -0.836 5.836 17 Si 0.908 3.092 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.121 3.879 22 C -0.218 4.218 23 C -0.159 4.159 24 C -0.075 4.075 25 C -0.118 4.118 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.271 0.729 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.314 -0.841 1.992 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.229 6.229 4 C 0.072 3.928 5 C -0.220 4.220 6 C -0.099 4.099 7 C -0.073 4.073 8 C -0.111 4.111 9 C -0.184 4.184 10 C 0.248 3.752 11 O -0.493 6.493 12 N -0.116 5.116 13 C -0.440 4.440 14 H 0.128 0.872 15 C -0.162 4.162 16 N -0.471 5.471 17 Si 0.733 3.267 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.190 1.190 21 C 0.016 3.984 22 C -0.256 4.256 23 C -0.197 4.197 24 C -0.093 4.093 25 C -0.119 4.119 26 C -0.159 4.159 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.149 0.851 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.106 -0.405 1.867 20.196 hybrid contribution 1.019 -0.762 0.421 1.340 sum -19.087 -1.167 2.289 19.259 Atomic orbital electron populations 1.21766 0.92916 1.02742 1.03396 1.22757 0.95666 0.82311 1.01446 1.85986 1.19282 1.28884 1.88768 1.18877 0.81985 0.93600 0.98293 1.21094 0.94226 0.97676 1.09024 1.21228 0.94132 0.97058 0.97464 1.19054 0.93428 0.92710 1.02097 1.22007 0.89805 0.99729 0.99516 1.22572 0.94871 0.99426 1.01565 1.16634 0.86598 0.85099 0.86850 1.90643 1.77711 1.23443 1.57465 1.43317 1.06268 1.03122 1.58871 1.19730 0.80186 0.95429 1.48616 0.87159 1.25193 0.99569 0.95367 0.96071 1.70086 1.38566 1.06305 1.32096 0.86201 0.81253 0.79065 0.80157 1.20148 1.20955 1.19030 1.21274 0.96395 0.86013 0.94750 1.23624 0.92627 1.03640 1.05682 1.22924 0.96870 0.99215 1.00704 1.21072 0.91257 0.98742 0.98239 1.19116 0.94077 0.92397 1.06265 1.20579 0.98417 0.94812 1.02070 0.90487 0.91598 0.91607 0.92086 0.92082 0.85649 0.85265 0.85437 0.85753 0.91864 0.86595 0.88809 0.88959 0.89376 0.89253 0.85085 0.91629 0.91714 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.44 5.45 37.16 0.20 0.64 16 3 O -0.32 -3.61 9.16 -18.94 -0.17 -3.78 16 4 C 0.12 1.51 6.67 -38.99 -0.26 1.25 16 5 C -0.20 -2.52 9.01 -39.50 -0.36 -2.88 16 6 C -0.08 -1.14 9.40 -39.13 -0.37 -1.51 16 7 C -0.07 -1.13 5.87 -105.04 -0.62 -1.74 16 8 C -0.09 -1.63 9.41 -37.16 -0.35 -1.98 16 9 C -0.16 -3.31 7.27 -39.33 -0.29 -3.60 16 10 C 0.45 11.51 7.32 -14.90 -0.11 11.40 16 11 O -0.60 -17.42 15.72 5.12 0.08 -17.34 16 12 N -0.40 -10.24 2.93 -110.89 -0.32 -10.57 16 13 C -0.31 -8.62 9.27 -15.04 -0.14 -8.76 16 14 H 0.11 3.25 7.37 -52.49 -0.39 2.87 16 15 C 0.05 1.18 4.46 -17.44 -0.08 1.10 16 16 N -0.84 -21.13 11.11 55.50 0.62 -20.51 16 17 Si 0.91 19.95 29.66 -169.99 -5.04 14.91 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.12 2.63 3.75 -67.93 -0.25 2.37 16 22 C -0.22 -3.76 7.79 -26.69 -0.21 -3.97 16 23 C -0.16 -3.11 9.10 -26.69 -0.24 -3.35 16 24 C -0.07 -1.03 9.43 -39.13 -0.37 -1.40 16 25 C -0.12 -1.52 5.89 -104.54 -0.62 -2.13 16 26 C -0.10 -1.05 9.78 36.01 0.35 -0.70 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 31 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16 32 H 0.13 1.26 6.27 -52.49 -0.33 0.93 16 33 H 0.13 1.72 6.16 -52.48 -0.32 1.39 16 34 H 0.13 2.46 7.47 -52.49 -0.39 2.07 16 35 H 0.12 2.21 3.08 -52.48 -0.16 2.05 16 36 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 37 H 0.12 2.62 7.78 -51.93 -0.40 2.21 16 38 H 0.09 1.65 6.86 -51.93 -0.36 1.30 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 45 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -31.02 369.32 -9.07 -40.08 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.48 Total: 7.43 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.32 Total: -15.78 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.29 Total: -31.08 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.09 Total: -21.12 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.04 Total: 14.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.02 -9.07 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274674593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.467 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds