Wall clock time and date at job start Tue Mar 31 2020 10:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46511 * 109.47056 * 2 1 4 4 C 1.46498 * 119.99783 * 270.00136 * 3 2 1 5 5 C 1.50701 * 109.46843 * 269.99946 * 4 3 2 6 6 H 1.07996 * 120.00376 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99608 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99447 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99982 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46873 * 90.00340 * 9 7 5 11 11 H 1.48504 * 109.46796 * 209.99865 * 9 7 5 12 12 H 1.48498 * 109.47178 * 330.00271 * 9 7 5 13 13 C 1.34778 * 119.99674 * 90.00194 * 3 2 1 14 14 O 1.21278 * 119.99542 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00256 * 359.97438 * 13 3 2 16 16 H 1.09002 * 115.56092 * 309.05440 * 15 13 3 17 17 C 1.53079 * 117.50713 * 163.32961 * 15 13 3 18 18 C 1.52656 * 117.50935 * 94.77997 * 15 13 3 19 19 C 1.53389 * 117.85705 * 359.47822 * 18 15 13 20 20 C 1.53616 * 107.41362 * 256.87586 * 19 18 15 21 21 O 1.42672 * 109.07397 * 299.68074 * 20 19 18 22 22 C 1.35664 * 119.00074 * 52.12023 * 21 20 19 23 23 C 1.39016 * 119.32227 * 158.84274 * 22 21 20 24 24 C 1.38022 * 120.11699 * 179.64501 * 23 22 21 25 25 C 1.38283 * 120.16126 * 0.02562 * 24 23 22 26 26 C 1.38268 * 119.95228 * 0.16565 * 25 24 23 27 27 C 1.38051 * 120.04851 * 359.97070 * 26 25 24 28 28 H 1.08997 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47152 * 299.99989 * 1 2 3 30 30 H 1.08999 * 109.47157 * 59.99884 * 1 2 3 31 31 H 1.09000 * 109.47152 * 240.00011 * 2 1 3 32 32 H 1.08998 * 109.47577 * 119.99469 * 2 1 3 33 33 H 1.09000 * 109.47433 * 29.99764 * 4 3 2 34 34 H 1.09001 * 109.46697 * 150.00315 * 4 3 2 35 35 H 0.97000 * 119.99433 * 180.02562 * 8 7 5 36 36 H 1.08990 * 117.51142 * 359.97418 * 17 15 13 37 37 H 1.09004 * 117.50228 * 145.04027 * 17 15 13 38 38 H 1.09004 * 109.86686 * 16.35490 * 19 18 15 39 39 H 1.08999 * 109.87038 * 137.32299 * 19 18 15 40 40 H 1.08997 * 109.53330 * 59.55170 * 20 19 18 41 41 H 1.08994 * 109.53889 * 179.80056 * 20 19 18 42 42 H 1.08002 * 119.94086 * 359.67509 * 23 22 21 43 43 H 1.07998 * 119.91300 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.02239 * 180.14474 * 25 24 23 45 45 H 1.08002 * 119.97887 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 5.3916 2.1843 -3.2569 9 14 3.0129 3.4360 -3.9288 10 1 3.1156 4.8561 -3.5069 11 1 3.4066 3.3137 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1673 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 1 1.0140 0.8337 2.5697 17 6 2.6162 1.9051 3.7350 18 6 3.1781 0.6159 3.1396 19 6 4.5371 0.6826 2.4314 20 6 4.7746 -0.6802 1.7634 21 8 4.7853 -1.6953 2.7659 22 6 3.7486 -1.7695 3.6378 23 6 3.5073 -2.9630 4.3086 24 6 2.4615 -3.0546 5.2047 25 6 1.6492 -1.9603 5.4387 26 6 1.8824 -0.7721 4.7712 27 6 2.9257 -0.6776 3.8721 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 5.7178 2.5753 -4.0824 36 1 3.2095 2.8123 3.6216 37 1 2.0496 1.8264 4.6629 38 1 4.5229 1.4681 1.6758 39 1 5.3243 0.8823 3.1583 40 1 3.9752 -0.8808 1.0502 41 1 5.7333 -0.6699 1.2450 42 1 4.1396 -3.8199 4.1286 43 1 2.2768 -3.9835 5.7237 44 1 0.8330 -2.0338 6.1421 45 1 1.2480 0.0827 4.9533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277004542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:24 Heat of formation + Delta-G solvation = -20.766274 kcal Electronic energy + Delta-G solvation = -27502.292965 eV Core-core repulsion = 23871.784230 eV Total energy + Delta-G solvation = -3630.508735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10454 -39.30241 -37.49919 -36.76172 -35.37885 -32.73048 -31.10053 -30.62795 -30.37792 -29.86477 -27.96516 -24.51762 -24.13462 -23.34180 -22.99989 -21.83638 -21.44760 -19.42108 -18.07613 -17.95065 -17.02004 -16.57568 -16.50899 -15.94650 -15.52844 -14.95965 -14.77266 -14.26343 -14.22899 -13.86637 -13.64075 -13.51988 -13.42444 -13.10390 -12.80498 -12.54231 -12.43124 -12.27361 -12.03136 -11.76462 -11.64011 -11.47250 -11.12768 -11.08784 -10.98607 -10.84514 -10.65347 -10.54779 -10.27545 -10.15107 -9.95465 -9.59019 -9.17770 -8.71903 -8.62421 -8.11651 -7.76882 -6.12923 -4.11592 1.18825 1.35776 3.05804 3.26392 3.31851 3.32355 3.34629 3.59734 3.71071 4.11650 4.36329 4.45689 4.62832 4.64485 4.79226 4.90646 4.95526 5.10270 5.19085 5.22083 5.28026 5.37662 5.38451 5.45762 5.49717 5.55056 5.64519 5.70181 5.76910 5.87021 5.93670 5.98441 6.08989 6.11818 6.14238 6.19496 6.30965 6.37874 6.41998 6.48355 6.68184 6.74234 6.90954 7.30816 7.52532 7.57012 8.20478 8.41986 8.86884 8.93514 9.47854 11.00136 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.004301 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.888664 B = 6508.048813 C = 6858.898584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.586 5.586 4 C 0.215 3.785 5 C -0.528 4.528 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.538 3.462 14 O -0.537 6.537 15 C -0.166 4.166 16 H 0.122 0.878 17 C -0.131 4.131 18 C -0.068 4.068 19 C -0.126 4.126 20 C 0.068 3.932 21 O -0.319 6.319 22 C 0.144 3.856 23 C -0.152 4.152 24 C -0.090 4.090 25 C -0.156 4.156 26 C -0.083 4.083 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 -9.769 15.403 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.317 5.317 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.325 3.675 14 O -0.415 6.415 15 C -0.187 4.187 16 H 0.139 0.861 17 C -0.169 4.169 18 C -0.068 4.068 19 C -0.164 4.164 20 C -0.006 4.006 21 O -0.233 6.233 22 C 0.098 3.902 23 C -0.171 4.171 24 C -0.108 4.108 25 C -0.174 4.174 26 C -0.101 4.101 27 C -0.118 4.118 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.838 -9.230 15.180 19.418 hybrid contribution -0.697 0.679 -0.792 1.255 sum -8.535 -8.551 14.388 18.788 Atomic orbital electron populations 1.22218 0.96729 1.01603 1.02165 1.21452 0.93513 0.83849 1.02929 1.47862 1.63766 1.13278 1.06770 1.19677 0.97435 0.93369 0.80046 1.21281 0.95206 1.32948 1.07175 0.90721 1.24835 0.94953 0.95754 0.97318 1.69887 1.15057 1.44897 1.23599 0.86878 0.81513 0.81634 0.79831 1.19939 1.21082 1.19112 1.19306 0.77981 0.86223 0.84020 1.90674 1.45819 1.17978 1.87029 1.22569 0.98372 1.04239 0.93555 0.86059 1.23093 1.02198 0.96283 0.95283 1.19981 0.94262 0.91380 1.01209 1.22001 0.94457 0.99113 1.00783 1.23038 1.04407 0.85275 0.87915 1.85763 1.41043 1.54258 1.42267 1.18762 0.87731 0.92742 0.90962 1.20583 1.00231 0.95898 1.00395 1.20889 0.94284 0.98636 0.96977 1.20979 1.01106 0.93318 1.01976 1.20780 0.96296 0.97938 0.95096 1.19051 0.98721 0.93195 1.00841 0.91996 0.92999 0.92197 0.89813 0.91398 0.95253 0.94616 0.92550 0.86949 0.87908 0.88059 0.89996 0.91175 0.86747 0.85309 0.85675 0.86024 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.23 37.16 0.38 -1.81 16 2 C 0.11 1.68 5.72 -4.04 -0.02 1.66 16 3 N -0.59 -11.65 2.46 -175.05 -0.43 -12.08 16 4 C 0.22 5.11 4.23 -5.19 -0.02 5.09 16 5 C -0.53 -14.53 9.94 -34.44 -0.34 -14.87 16 6 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 9 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.54 10.64 5.69 -10.99 -0.06 10.58 16 14 O -0.54 -12.83 15.85 5.56 0.09 -12.74 16 15 C -0.17 -2.50 3.87 -91.91 -0.36 -2.85 16 16 H 0.12 1.59 7.20 -51.93 -0.37 1.21 16 17 C -0.13 -1.78 9.10 -26.84 -0.24 -2.03 16 18 C -0.07 -0.97 2.19 -155.74 -0.34 -1.31 16 19 C -0.13 -2.00 5.79 -26.21 -0.15 -2.15 16 20 C 0.07 1.04 7.00 37.48 0.26 1.31 16 21 O -0.32 -4.81 10.20 -18.69 -0.19 -5.00 16 22 C 0.14 1.99 6.51 -39.11 -0.25 1.73 16 23 C -0.15 -1.78 9.96 -39.37 -0.39 -2.17 16 24 C -0.09 -0.87 10.03 -39.64 -0.40 -1.27 16 25 C -0.16 -1.51 10.05 -39.55 -0.40 -1.91 16 26 C -0.08 -0.92 9.05 -39.64 -0.36 -1.28 16 27 C -0.12 -1.55 5.61 -104.47 -0.59 -2.13 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.64 7.37 -51.93 -0.38 0.26 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 32 H 0.07 0.99 5.81 -51.93 -0.30 0.69 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.11 1.69 7.77 -51.93 -0.40 1.29 16 37 H 0.10 1.10 6.68 -51.93 -0.35 0.76 16 38 H 0.10 1.94 6.50 -51.93 -0.34 1.61 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.12 6.96 -51.93 -0.36 0.76 16 41 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.17 6.51 -52.49 -0.34 0.83 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -32.24 361.10 -8.91 -41.15 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.54 Total: 4.18 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.38 Total: -11.41 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.34 Total: -38.19 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.10 Total: -17.74 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.24 -8.91 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277004542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.384 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds