Wall clock time and date at job start Tue Mar 31 2020 10:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46511 * 109.47056 * 2 1 4 4 C 1.46498 * 119.99783 * 270.00136 * 3 2 1 5 5 C 1.50701 * 109.46843 * 269.99946 * 4 3 2 6 6 H 1.07996 * 120.00376 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99608 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99447 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99982 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46873 * 90.00340 * 9 7 5 11 11 H 1.48504 * 109.46796 * 209.99865 * 9 7 5 12 12 H 1.48498 * 109.47178 * 330.00271 * 9 7 5 13 13 C 1.34778 * 119.99674 * 90.00194 * 3 2 1 14 14 O 1.21278 * 119.99542 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00256 * 359.97438 * 13 3 2 16 16 H 1.09002 * 115.56092 * 309.05440 * 15 13 3 17 17 C 1.53079 * 117.50713 * 163.32961 * 15 13 3 18 18 C 1.52656 * 117.50935 * 94.77997 * 15 13 3 19 19 C 1.53389 * 117.85705 * 359.47822 * 18 15 13 20 20 C 1.53616 * 107.41362 * 256.87586 * 19 18 15 21 21 O 1.42672 * 109.07397 * 299.68074 * 20 19 18 22 22 C 1.35664 * 119.00074 * 52.12023 * 21 20 19 23 23 C 1.39016 * 119.32227 * 158.84274 * 22 21 20 24 24 C 1.38022 * 120.11699 * 179.64501 * 23 22 21 25 25 C 1.38283 * 120.16126 * 0.02562 * 24 23 22 26 26 C 1.38268 * 119.95228 * 0.16565 * 25 24 23 27 27 C 1.38051 * 120.04851 * 359.97070 * 26 25 24 28 28 H 1.08997 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47152 * 299.99989 * 1 2 3 30 30 H 1.08999 * 109.47157 * 59.99884 * 1 2 3 31 31 H 1.09000 * 109.47152 * 240.00011 * 2 1 3 32 32 H 1.08998 * 109.47577 * 119.99469 * 2 1 3 33 33 H 1.09000 * 109.47433 * 29.99764 * 4 3 2 34 34 H 1.09001 * 109.46697 * 150.00315 * 4 3 2 35 35 H 0.97000 * 119.99433 * 180.02562 * 8 7 5 36 36 H 1.08990 * 117.51142 * 359.97418 * 17 15 13 37 37 H 1.09004 * 117.50228 * 145.04027 * 17 15 13 38 38 H 1.09004 * 109.86686 * 16.35490 * 19 18 15 39 39 H 1.08999 * 109.87038 * 137.32299 * 19 18 15 40 40 H 1.08997 * 109.53330 * 59.55170 * 20 19 18 41 41 H 1.08994 * 109.53889 * 179.80056 * 20 19 18 42 42 H 1.08002 * 119.94086 * 359.67509 * 23 22 21 43 43 H 1.07998 * 119.91300 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.02239 * 180.14474 * 25 24 23 45 45 H 1.08002 * 119.97887 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 5.3916 2.1843 -3.2569 9 14 3.0129 3.4360 -3.9288 10 1 3.1156 4.8561 -3.5069 11 1 3.4066 3.3137 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1673 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 1 1.0140 0.8337 2.5697 17 6 2.6162 1.9051 3.7350 18 6 3.1781 0.6159 3.1396 19 6 4.5371 0.6826 2.4314 20 6 4.7746 -0.6802 1.7634 21 8 4.7853 -1.6953 2.7659 22 6 3.7486 -1.7695 3.6378 23 6 3.5073 -2.9630 4.3086 24 6 2.4615 -3.0546 5.2047 25 6 1.6492 -1.9603 5.4387 26 6 1.8824 -0.7721 4.7712 27 6 2.9257 -0.6776 3.8721 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 5.7178 2.5753 -4.0824 36 1 3.2095 2.8123 3.6216 37 1 2.0496 1.8264 4.6629 38 1 4.5229 1.4681 1.6758 39 1 5.3243 0.8823 3.1583 40 1 3.9752 -0.8808 1.0502 41 1 5.7333 -0.6699 1.2450 42 1 4.1396 -3.8199 4.1286 43 1 2.2768 -3.9835 5.7237 44 1 0.8330 -2.0338 6.1421 45 1 1.2480 0.0827 4.9533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277004542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:23 Heat of formation + Delta-G solvation = -39.570442 kcal Electronic energy + Delta-G solvation = -27503.108375 eV Core-core repulsion = 23871.784230 eV Total energy + Delta-G solvation = -3631.324145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24012 -40.68766 -38.49023 -37.99816 -36.97907 -34.82998 -32.28493 -31.91370 -31.51500 -30.83897 -29.72789 -26.05838 -25.30404 -24.43576 -24.27246 -23.19050 -22.66844 -20.59632 -19.51086 -19.08838 -18.98817 -17.89062 -17.71199 -17.24147 -16.97501 -16.34226 -16.00466 -15.81303 -15.32855 -15.04460 -14.90838 -14.77747 -14.62803 -14.51003 -14.32753 -13.89305 -13.73544 -13.53170 -13.42846 -13.18079 -12.99251 -12.75227 -12.56187 -12.43674 -12.15724 -12.13397 -12.06518 -12.01847 -11.75933 -11.73202 -11.41273 -11.07595 -10.83339 -10.75114 -9.64585 -9.46276 -9.06432 -8.34150 -6.38257 0.32114 0.49721 1.30892 1.34448 1.42433 1.61944 2.16053 2.25637 2.29657 2.61747 3.00207 3.05040 3.30450 3.45971 3.55066 3.66507 3.79653 3.86157 4.03062 4.15031 4.23713 4.27196 4.32121 4.37774 4.47668 4.55482 4.58550 4.61082 4.64855 4.76610 4.79980 4.83237 4.89045 4.92720 4.95153 4.96955 5.03150 5.15652 5.32359 5.43324 5.45061 5.57644 5.62610 5.64175 5.92550 6.23240 6.48281 6.62265 6.65362 7.20885 7.37550 8.82195 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.004301 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.888664 B = 6508.048813 C = 6858.898584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.224 3.776 5 C -0.531 4.531 6 H 0.035 0.965 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.240 1.240 13 C 0.532 3.468 14 O -0.590 6.590 15 C -0.166 4.166 16 H 0.153 0.847 17 C -0.120 4.120 18 C -0.062 4.062 19 C -0.124 4.124 20 C 0.076 3.924 21 O -0.330 6.330 22 C 0.108 3.892 23 C -0.160 4.160 24 C -0.083 4.083 25 C -0.145 4.145 26 C -0.084 4.084 27 C -0.128 4.128 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -11.360 17.669 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.019 4.019 3 N -0.321 5.321 4 C 0.102 3.898 5 C -0.569 4.569 6 H 0.053 0.947 7 C -0.183 4.183 8 N -0.582 5.582 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.163 1.163 13 C 0.321 3.679 14 O -0.471 6.471 15 C -0.186 4.186 16 H 0.170 0.830 17 C -0.157 4.157 18 C -0.063 4.063 19 C -0.162 4.162 20 C 0.001 3.999 21 O -0.244 6.244 22 C 0.063 3.937 23 C -0.178 4.178 24 C -0.101 4.101 25 C -0.163 4.163 26 C -0.101 4.101 27 C -0.129 4.129 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.173 0.827 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.478 -10.874 17.468 23.561 hybrid contribution 0.504 1.063 -1.377 1.811 sum -10.974 -9.811 16.091 21.808 Atomic orbital electron populations 1.22147 0.93669 1.03613 1.02321 1.21671 0.95878 0.81395 1.02982 1.47929 1.63750 1.14726 1.05683 1.19333 0.95168 0.92915 0.82378 1.21503 0.96784 1.31964 1.06662 0.94710 1.25757 0.96551 0.97134 0.98879 1.70036 1.17221 1.46513 1.24457 0.85810 0.80611 0.79146 0.77979 1.20339 1.20102 1.16343 1.20122 0.76519 0.85809 0.85457 1.90635 1.48040 1.20475 1.87932 1.22488 1.00007 1.04849 0.91279 0.83002 1.23220 1.01530 0.94947 0.95995 1.19897 0.92476 0.92907 1.01023 1.21865 0.96482 0.97930 0.99921 1.22798 1.03552 0.85449 0.88067 1.85738 1.42384 1.53755 1.42557 1.19162 0.88369 0.94246 0.91895 1.20844 1.01101 0.95293 1.00599 1.21310 0.92884 1.00116 0.95750 1.21410 1.01276 0.92326 1.01297 1.21054 0.95507 0.99402 0.94187 1.18998 1.00029 0.91922 1.01946 0.88995 0.91881 0.93001 0.91044 0.90201 0.93533 0.96447 0.92363 0.89156 0.83929 0.92321 0.89628 0.92408 0.87483 0.84651 0.82475 0.82678 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.23 71.98 0.74 -2.97 16 2 C 0.10 3.20 5.72 86.38 0.49 3.69 16 3 N -0.59 -24.00 2.46 -826.14 -2.03 -26.03 16 4 C 0.22 10.91 4.23 85.63 0.36 11.27 16 5 C -0.53 -30.75 9.94 25.60 0.25 -30.50 16 6 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 7 C 0.02 0.88 5.47 84.66 0.46 1.35 16 8 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 9 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 13 C 0.53 21.61 5.69 87.66 0.50 22.11 16 14 O -0.59 -29.58 15.85 -3.02 -0.05 -29.63 16 15 C -0.17 -4.81 3.87 -11.63 -0.05 -4.85 16 16 H 0.15 3.46 7.20 -2.39 -0.02 3.44 16 17 C -0.12 -3.10 9.10 30.53 0.28 -2.82 16 18 C -0.06 -1.76 2.19 -52.98 -0.12 -1.88 16 19 C -0.12 -4.24 5.79 30.93 0.18 -4.06 16 20 C 0.08 2.53 7.00 72.19 0.51 3.03 16 21 O -0.33 -10.24 10.20 -89.80 -0.92 -11.16 16 22 C 0.11 2.88 6.51 22.57 0.15 3.03 16 23 C -0.16 -3.35 9.96 22.41 0.22 -3.13 16 24 C -0.08 -1.24 10.03 22.23 0.22 -1.02 16 25 C -0.15 -2.04 10.05 22.29 0.22 -1.82 16 26 C -0.08 -1.48 9.05 22.23 0.20 -1.28 16 27 C -0.13 -3.12 5.61 -19.77 -0.11 -3.23 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.34 7.37 -2.39 -0.02 1.32 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.08 2.28 5.81 -2.39 -0.01 2.27 16 33 H 0.05 2.10 7.13 -2.39 -0.02 2.09 16 34 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.09 2.77 7.77 -2.39 -0.02 2.76 16 37 H 0.14 2.51 6.68 -2.38 -0.02 2.50 16 38 H 0.06 2.50 6.50 -2.38 -0.02 2.48 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.06 2.01 6.96 -2.39 -0.02 1.99 16 41 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 42 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 45 H 0.15 1.92 6.51 -2.91 -0.02 1.90 16 Total: -1.00 -75.62 361.10 4.64 -70.98 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.94 Total: 21.30 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.52 Total: -13.07 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.73 Total: -84.78 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.96 Total: -40.78 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -75.62 4.64 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277004542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.405 kcal (2) G-P(sol) polarization free energy of solvation -75.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds