Wall clock time and date at job start Tue Mar 31 2020 11:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99874 * 2 1 4 4 H 1.08992 * 109.47577 * 29.99700 * 3 2 1 5 5 C 1.53000 * 109.47187 * 150.00023 * 3 2 1 6 6 N 1.46903 * 109.47260 * 293.34309 * 5 3 2 7 7 C 1.46893 * 111.00033 * 76.61706 * 6 5 3 8 8 C 1.50707 * 109.47326 * 57.43817 * 7 6 5 9 9 H 1.07999 * 119.99822 * 4.56082 * 8 7 6 10 10 C 1.37873 * 119.99885 * 184.55776 * 8 7 6 11 11 N 1.31513 * 120.00577 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99819 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46885 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46933 * 119.99659 * 12 10 8 15 15 H 1.48494 * 109.47364 * 240.00366 * 12 10 8 16 16 C 1.46900 * 111.00047 * 200.57402 * 6 5 3 17 17 C 1.50699 * 109.46855 * 164.23086 * 16 6 5 18 18 C 1.34516 * 125.78654 * 95.52004 * 17 16 6 19 19 C 1.41390 * 106.83421 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.84332 * 359.97438 * 19 18 17 21 21 O 1.34302 * 125.78888 * 275.20499 * 17 16 6 22 22 C 1.50706 * 109.46788 * 269.99580 * 3 2 1 23 23 C 1.38233 * 120.00130 * 324.72863 * 22 3 2 24 24 C 1.38236 * 119.99380 * 179.78858 * 23 22 3 25 25 C 1.38232 * 120.00502 * 0.43799 * 24 23 22 26 26 C 1.38230 * 119.99977 * 359.81745 * 25 24 23 27 27 C 1.38237 * 120.00051 * 359.97391 * 26 25 24 28 28 H 1.09000 * 109.47139 * 300.00404 * 1 2 3 29 29 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46918 * 59.99777 * 1 2 3 31 31 H 1.09003 * 109.46955 * 53.34311 * 5 3 2 32 32 H 1.08998 * 109.47566 * 173.33799 * 5 3 2 33 33 H 1.09001 * 109.47489 * 177.43967 * 7 6 5 34 34 H 1.09001 * 109.47356 * 297.44417 * 7 6 5 35 35 H 0.96998 * 120.00197 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.46882 * 284.23013 * 16 6 5 37 37 H 1.09005 * 109.47287 * 44.22777 * 16 6 5 38 38 H 1.07994 * 126.58382 * 0.03032 * 18 17 16 39 39 H 1.08004 * 126.57197 * 179.97438 * 19 18 17 40 40 H 1.07995 * 125.78772 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.00229 * 0.02562 * 23 22 3 42 42 H 1.08008 * 119.99402 * 180.27667 * 24 23 22 43 43 H 1.08004 * 120.00112 * 179.83254 * 25 24 23 44 44 H 1.08000 * 120.00317 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00357 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3589 1.2633 0.7212 6 7 3.1440 0.9713 2.1448 7 6 2.8486 -0.4527 2.3514 8 6 3.9776 -1.2851 1.8001 9 1 4.8620 -0.8042 1.4090 10 6 3.8813 -2.6604 1.7952 11 7 2.8042 -3.2461 2.2710 12 14 5.2810 -3.6922 1.1126 13 1 6.3706 -2.7993 0.6427 14 1 5.8002 -4.5881 2.1769 15 1 4.7851 -4.5092 -0.0240 16 6 4.2996 1.3913 2.9487 17 6 3.9080 1.4421 4.4030 18 6 4.0974 0.4608 5.3034 19 6 3.5847 0.9302 6.5346 20 6 3.1133 2.1704 6.3130 21 8 3.3161 2.4770 5.0213 22 6 2.2146 1.7643 -1.4209 23 6 2.5651 0.8517 -2.3983 24 6 2.7482 1.2720 -3.7024 25 6 2.5898 2.6062 -4.0274 26 6 2.2444 3.5196 -3.0490 27 6 2.0570 3.0987 -1.7457 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 3.9823 0.4851 0.2808 32 1 3.8559 2.2280 0.6192 33 1 2.7388 -0.6501 3.4177 34 1 1.9228 -0.7101 1.8369 35 1 2.7364 -4.2137 2.2672 36 1 5.1129 0.6779 2.8161 37 1 4.6270 2.3796 2.6257 38 1 4.5542 -0.5006 5.1210 39 1 3.5738 0.3955 7.4729 40 1 2.6533 2.8122 7.0498 41 1 2.6920 -0.1901 -2.1437 42 1 3.0177 0.5582 -4.4669 43 1 2.7355 2.9349 -5.0458 44 1 2.1210 4.5621 -3.3028 45 1 1.7868 3.8123 -0.9813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284332633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:16 Heat of formation + Delta-G solvation = 9.301957 kcal Electronic energy + Delta-G solvation = -26793.416217 eV Core-core repulsion = 23164.211338 eV Total energy + Delta-G solvation = -3629.204878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93562 -39.42126 -37.52415 -36.04927 -32.48043 -32.41904 -31.88209 -30.68522 -29.99058 -27.92994 -26.72697 -25.63448 -24.28687 -23.18012 -22.31896 -21.17154 -20.98624 -20.02551 -19.50158 -17.01508 -16.80049 -16.36523 -15.91395 -15.68495 -15.28330 -14.88136 -14.37842 -14.25734 -14.19674 -13.96675 -13.72084 -13.43102 -13.16749 -12.72549 -12.53387 -12.45693 -12.23946 -12.12314 -12.05566 -11.35707 -11.10473 -11.06069 -10.94212 -10.85195 -10.79898 -10.59076 -10.46108 -10.12224 -9.84661 -9.54441 -9.29915 -8.95973 -8.73413 -8.54168 -8.24624 -7.89399 -7.18695 -5.91870 -3.97160 1.50895 1.59763 2.30492 3.21663 3.30936 3.39539 3.41487 3.59151 3.96158 4.37525 4.48338 4.87405 5.09698 5.12134 5.21669 5.32897 5.39822 5.42517 5.58882 5.64172 5.67506 5.72975 5.77688 5.85954 5.88258 5.94305 6.00939 6.12726 6.19942 6.26089 6.29429 6.36116 6.38764 6.60845 6.61648 6.68727 6.70874 6.75493 6.85653 7.11286 7.19626 7.34166 7.69549 7.75409 7.88428 8.08032 8.09399 8.34259 8.39258 9.11038 9.66393 11.14284 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.005198 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.760651 B = 5385.495888 C = 7209.945286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.342 6.342 3 C 0.139 3.861 4 H 0.067 0.933 5 C 0.066 3.934 6 N -0.538 5.538 7 C 0.177 3.823 8 C -0.536 4.536 9 H 0.052 0.948 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.879 3.121 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.133 3.867 17 C 0.021 3.979 18 C -0.201 4.201 19 C -0.212 4.212 20 C -0.064 4.064 21 O -0.177 6.177 22 C -0.101 4.101 23 C -0.089 4.089 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.114 4.114 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.258 0.742 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.193 0.807 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 12.026 -4.020 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.260 6.260 3 C 0.080 3.920 4 H 0.085 0.915 5 C -0.062 4.062 6 N -0.262 5.262 7 C 0.052 3.948 8 C -0.575 4.575 9 H 0.070 0.930 10 C -0.132 4.132 11 N -0.525 5.525 12 Si 0.708 3.292 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.005 3.995 17 C -0.030 4.030 18 C -0.221 4.221 19 C -0.232 4.232 20 C -0.132 4.132 21 O -0.073 6.073 22 C -0.102 4.102 23 C -0.107 4.107 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.133 4.133 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.210 0.790 41 H 0.150 0.850 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.183 12.217 -3.972 13.031 hybrid contribution 1.210 -1.240 -0.447 1.789 sum -0.973 10.977 -4.419 11.873 Atomic orbital electron populations 1.22668 0.82648 1.02258 0.98687 1.88249 1.18170 1.25514 1.94048 1.20932 0.96050 0.85741 0.89310 0.91521 1.22031 0.94489 1.00279 0.89393 1.62486 1.34601 1.24143 1.04979 1.20095 0.98027 0.79385 0.97291 1.21606 1.03210 0.91795 1.40896 0.93012 1.24825 0.95248 0.97850 0.95266 1.69950 1.27007 1.09479 1.46113 0.86749 0.82910 0.80715 0.78842 1.20022 1.21234 1.21105 1.20426 0.94025 1.00371 0.84705 1.22473 0.98865 0.86290 0.95327 1.21667 1.07163 1.00901 0.92390 1.21779 1.05402 0.96438 0.99552 1.23780 1.06798 0.98388 0.84222 1.83981 1.61731 1.40236 1.21341 1.20629 0.99070 0.93553 0.96945 1.21169 0.96790 1.00627 0.92162 1.21178 1.00794 0.95826 0.96629 1.21088 1.00808 0.93644 0.99008 1.21034 1.01078 0.99213 0.93270 1.21031 1.00524 0.95311 0.96401 0.94384 0.90018 0.95441 0.91385 0.91977 0.95601 0.91729 0.93198 0.90447 0.91472 0.83380 0.84243 0.79019 0.85008 0.86389 0.86662 0.86521 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.76 101.05 1.09 1.66 16 2 O -0.34 -6.83 6.77 -35.23 -0.24 -7.07 16 3 C 0.14 2.43 2.53 -27.88 -0.07 2.36 16 4 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 5 C 0.07 1.25 4.62 -3.82 -0.02 1.24 16 6 N -0.54 -11.23 4.58 -237.51 -1.09 -12.32 16 7 C 0.18 4.42 4.68 -4.98 -0.02 4.39 16 8 C -0.54 -14.17 7.17 -34.44 -0.25 -14.42 16 9 H 0.05 1.36 6.09 -52.49 -0.32 1.04 16 10 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 11 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 12 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.13 2.55 5.37 -4.98 -0.03 2.52 16 17 C 0.02 0.41 6.26 -35.62 -0.22 0.19 16 18 C -0.20 -3.91 9.76 -39.70 -0.39 -4.29 16 19 C -0.21 -3.51 10.91 -39.70 -0.43 -3.94 16 20 C -0.06 -0.98 12.09 29.41 0.36 -0.63 16 21 O -0.18 -3.21 10.65 5.72 0.06 -3.15 16 22 C -0.10 -1.57 4.95 -104.62 -0.52 -2.09 16 23 C -0.09 -1.40 9.35 -39.58 -0.37 -1.77 16 24 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 25 C -0.13 -1.52 10.05 -39.59 -0.40 -1.92 16 26 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 27 C -0.11 -1.53 9.68 -39.58 -0.38 -1.91 16 28 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.46 6.01 -51.93 -0.31 1.15 16 32 H 0.06 1.03 7.63 -51.93 -0.40 0.64 16 33 H 0.03 0.71 6.50 -51.93 -0.34 0.37 16 34 H 0.06 1.75 5.62 -51.93 -0.29 1.46 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 1.58 6.57 -51.93 -0.34 1.24 16 37 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 38 H 0.15 3.02 8.06 -52.49 -0.42 2.60 16 39 H 0.14 1.95 8.06 -52.48 -0.42 1.52 16 40 H 0.19 2.06 8.06 -52.49 -0.42 1.63 16 41 H 0.13 2.27 7.64 -52.49 -0.40 1.87 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -30.49 370.41 -9.07 -39.56 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.56 Total: 6.92 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.55 Total: -20.78 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.35 Total: -37.33 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.18 Total: -10.23 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.49 -9.07 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284332633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.862 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds