Wall clock time and date at job start Tue Mar 31 2020 10:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46970 * 2 1 4 4 C 1.46495 * 120.00591 * 82.47708 * 3 2 1 5 5 C 1.50704 * 109.47005 * 269.99966 * 4 3 2 6 6 H 1.07994 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00029 * 179.97438 * 5 4 3 8 8 N 1.31523 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00219 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47314 * 90.00185 * 9 7 5 11 11 H 1.48498 * 109.47275 * 210.00204 * 9 7 5 12 12 H 1.48500 * 109.46849 * 330.00252 * 9 7 5 13 13 C 1.34782 * 119.99866 * 262.47570 * 3 2 1 14 14 O 1.21518 * 120.00397 * 174.16577 * 13 3 2 15 15 C 1.48075 * 119.99720 * 354.16726 * 13 3 2 16 16 C 1.39586 * 119.96307 * 48.76671 * 15 13 3 17 17 C 1.37844 * 120.17113 * 179.11776 * 16 15 13 18 18 C 1.39776 * 119.68055 * 0.29601 * 17 16 15 19 19 C 1.39370 * 120.00440 * 0.92605 * 18 17 16 20 20 C 1.37588 * 120.39128 * 358.70412 * 19 18 17 21 21 C 1.51906 * 119.57304 * 177.42375 * 19 18 17 22 22 C 1.52432 * 109.27440 * 69.03877 * 21 19 18 23 23 C 1.52116 * 111.49748 * 272.47969 * 22 21 19 24 24 C 1.50798 * 114.14880 * 71.57964 * 23 22 21 25 25 C 1.47545 * 120.38526 * 181.95214 * 18 17 16 26 26 O 1.21225 * 121.23967 * 293.09192 * 25 18 17 27 27 H 1.09002 * 109.46829 * 47.20858 * 1 2 3 28 28 H 1.09000 * 109.47242 * 167.20732 * 1 2 3 29 29 H 1.08992 * 109.47534 * 287.20967 * 1 2 3 30 30 H 1.08993 * 109.47797 * 239.99720 * 2 1 3 31 31 H 1.09008 * 109.46859 * 119.99200 * 2 1 3 32 32 H 1.08999 * 109.48003 * 149.99999 * 4 3 2 33 33 H 1.09001 * 109.47114 * 29.99558 * 4 3 2 34 34 H 0.96995 * 120.00144 * 179.97438 * 8 7 5 35 35 H 1.08007 * 119.91225 * 359.37397 * 16 15 13 36 36 H 1.08002 * 120.15791 * 180.02562 * 17 16 15 37 37 H 1.07994 * 120.17046 * 180.45543 * 20 19 18 38 38 H 1.08993 * 109.50922 * 188.98249 * 21 19 18 39 39 H 1.09003 * 109.50108 * 309.06336 * 21 19 18 40 40 H 1.09010 * 109.06982 * 32.99390 * 22 21 19 41 41 H 1.08997 * 109.07586 * 151.95097 * 22 21 19 42 42 H 1.09006 * 108.55212 * 192.78672 * 23 22 21 43 43 H 1.09005 * 108.54928 * 310.37251 * 23 22 21 44 44 H 1.09004 * 109.36664 * 55.73670 * 24 23 22 45 45 H 1.08997 * 109.37215 * 175.48864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1059 2.1273 1.2577 5 6 0.8078 2.8527 1.5029 6 1 -0.0015 2.7662 0.7932 7 6 0.6532 3.6258 2.6339 8 7 1.6386 3.7308 3.4986 9 14 -0.9560 4.5244 2.9383 10 1 -1.8726 3.6496 3.7127 11 1 -0.6913 5.7673 3.7065 12 1 -1.5834 4.8704 1.6375 13 6 2.3870 1.9656 -1.1572 14 8 2.6908 3.1421 -1.1740 15 6 2.4218 1.1741 -2.4081 16 6 1.3306 0.3778 -2.7599 17 6 1.3511 -0.3467 -3.9324 18 6 2.4724 -0.2851 -4.7646 19 6 3.5705 0.4909 -4.3981 20 6 3.5491 1.2206 -3.2318 21 6 4.8069 0.5045 -5.2805 22 6 4.4845 1.2199 -6.5873 23 6 3.9124 0.2618 -7.6210 24 6 2.5095 -0.2032 -7.3213 25 6 2.4937 -1.0201 -6.0438 26 8 2.4982 -2.2320 -6.0725 27 1 -0.3633 0.6981 -0.7542 28 1 -0.3634 -1.0021 -0.2275 29 1 -0.3634 0.3040 0.9816 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.9196 2.8498 1.1958 33 1 2.2960 1.4353 2.0781 34 1 1.5300 4.2750 4.2941 35 1 0.4664 0.3325 -2.1136 36 1 0.5065 -0.9624 -4.2045 37 1 4.3991 1.8264 -2.9549 38 1 5.6139 1.0283 -4.7683 39 1 5.1144 -0.5197 -5.4919 40 1 3.7577 2.0085 -6.3917 41 1 5.3963 1.6677 -6.9827 42 1 3.9133 0.7578 -8.5917 43 1 4.5618 -0.6117 -7.6811 44 1 1.8587 0.6633 -7.2045 45 1 2.1485 -0.8180 -8.1458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290531442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:05 Heat of formation + Delta-G solvation = -53.046502 kcal Electronic energy + Delta-G solvation = -26391.763657 eV Core-core repulsion = 22759.855147 eV Total energy + Delta-G solvation = -3631.908511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79963 -39.46243 -37.85089 -36.17923 -35.44301 -32.88448 -32.33743 -31.38541 -30.20310 -29.56035 -27.44684 -25.41579 -24.71650 -22.86306 -22.80089 -22.24220 -20.86913 -19.93496 -18.59406 -17.25954 -16.71148 -16.62452 -16.22455 -15.62929 -15.32296 -15.10801 -14.56963 -14.47212 -14.14990 -14.00853 -13.85731 -13.65758 -13.46052 -13.41416 -12.90801 -12.57209 -12.47401 -12.23719 -12.14224 -11.84716 -11.52407 -11.47423 -11.29649 -11.19672 -11.08625 -10.98678 -10.84277 -10.66875 -10.50674 -10.09411 -9.89878 -9.61302 -9.15152 -8.95819 -8.69503 -8.43711 -7.74030 -6.05330 -4.09226 0.74019 1.27193 1.71392 3.16877 3.29167 3.36301 3.40662 3.66935 3.72874 3.87362 4.27673 4.43254 4.46599 4.55483 4.67716 4.74041 4.84154 4.94874 5.08119 5.20030 5.25981 5.29056 5.31736 5.40180 5.43468 5.52629 5.55195 5.57519 5.70868 5.72254 5.80477 5.81582 5.91787 5.96231 6.08357 6.18695 6.26880 6.30988 6.39370 6.71741 6.77811 7.02557 7.15039 7.38355 7.49335 7.90633 8.21227 8.32467 8.85109 9.00290 9.55254 11.03021 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.003162 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.736598 B = 8852.388724 C = 9268.360503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.542 3.458 14 O -0.529 6.529 15 C -0.089 4.089 16 C -0.107 4.107 17 C -0.087 4.087 18 C -0.148 4.148 19 C -0.058 4.058 20 C -0.074 4.074 21 C -0.087 4.087 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.162 4.162 25 C 0.413 3.587 26 O -0.445 6.445 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -9.896 -19.856 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.328 3.672 14 O -0.406 6.406 15 C -0.092 4.092 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.058 4.058 20 C -0.093 4.093 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.199 4.199 25 C 0.288 3.712 26 O -0.317 6.317 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.371 -9.827 -19.662 22.238 hybrid contribution -1.071 0.597 0.425 1.297 sum 2.301 -9.230 -19.237 21.460 Atomic orbital electron populations 1.22308 0.96102 1.00488 1.03930 1.21623 0.94743 0.83713 1.02201 1.48249 1.61618 1.13354 1.08668 1.19332 0.98245 0.91490 0.78157 1.21414 0.99394 1.28936 1.06239 0.92252 1.24934 0.96867 0.96378 0.95974 1.69930 1.31504 1.40282 1.11765 0.86517 0.83500 0.79300 0.78243 1.20673 1.21118 1.19889 1.18260 0.78872 0.86896 0.83160 1.90775 1.49296 1.15186 1.85385 1.20463 0.95174 0.97192 0.96413 1.21804 0.99041 0.94994 0.96715 1.21049 0.97189 0.98879 0.93388 1.20290 0.96450 1.01122 0.97054 1.19855 0.94993 0.95491 0.95488 1.20988 0.97881 0.97800 0.92607 1.20883 0.94805 1.01772 0.95005 1.21321 1.01908 0.98532 0.94046 1.20851 0.94273 0.99900 0.99826 1.21894 0.99841 1.01635 0.96578 1.22867 0.69228 0.88561 0.90530 1.90549 1.35180 1.16099 1.89922 0.92441 0.92649 0.90545 0.91029 0.90856 0.93944 0.94801 0.92738 0.83593 0.85218 0.84655 0.89846 0.90688 0.90849 0.90703 0.90600 0.91682 0.88685 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 8.68 37.16 0.32 -2.26 16 2 C 0.10 1.64 5.64 -4.04 -0.02 1.62 16 3 N -0.59 -12.36 2.47 -176.09 -0.44 -12.80 16 4 C 0.25 6.33 5.15 -5.19 -0.03 6.31 16 5 C -0.52 -14.44 8.83 -34.44 -0.30 -14.74 16 6 H 0.06 1.64 7.71 -52.49 -0.40 1.23 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.54 11.44 7.23 -12.22 -0.09 11.35 16 14 O -0.53 -13.44 16.67 5.35 0.09 -13.35 16 15 C -0.09 -1.45 4.98 -104.82 -0.52 -1.98 16 16 C -0.11 -1.49 7.47 -39.22 -0.29 -1.79 16 17 C -0.09 -1.05 9.81 -39.15 -0.38 -1.43 16 18 C -0.15 -1.76 5.48 -105.11 -0.58 -2.33 16 19 C -0.06 -0.68 5.10 -103.84 -0.53 -1.21 16 20 C -0.07 -1.05 9.35 -39.28 -0.37 -1.41 16 21 C -0.09 -0.78 5.41 -27.58 -0.15 -0.93 16 22 C -0.12 -0.87 5.58 -27.47 -0.15 -1.02 16 23 C -0.11 -0.72 5.29 -28.29 -0.15 -0.87 16 24 C -0.16 -1.23 5.79 -28.52 -0.17 -1.39 16 25 C 0.41 4.52 5.52 -30.05 -0.17 4.35 16 26 O -0.45 -6.15 17.93 5.60 0.10 -6.05 16 27 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.33 7.94 -51.93 -0.41 0.92 16 30 H 0.07 1.02 5.24 -51.93 -0.27 0.74 16 31 H 0.07 1.15 8.00 -51.92 -0.42 0.73 16 32 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 33 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.15 1.97 4.00 -52.48 -0.21 1.76 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.14 1.86 7.98 -52.49 -0.42 1.44 16 38 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 39 H 0.07 0.66 7.58 -51.93 -0.39 0.26 16 40 H 0.07 0.58 7.84 -51.92 -0.41 0.18 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 44 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -33.50 363.04 -9.29 -42.80 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.56 Total: -1.00 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.67 Total: -6.13 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.30 Total: -38.40 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.19 Total: -19.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.50 -9.29 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290531442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.250 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds