Wall clock time and date at job start Tue Mar 31 2020 10:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46970 * 2 1 4 4 C 1.46495 * 120.00591 * 82.47708 * 3 2 1 5 5 C 1.50704 * 109.47005 * 269.99966 * 4 3 2 6 6 H 1.07994 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00029 * 179.97438 * 5 4 3 8 8 N 1.31523 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00219 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47314 * 90.00185 * 9 7 5 11 11 H 1.48498 * 109.47275 * 210.00204 * 9 7 5 12 12 H 1.48500 * 109.46849 * 330.00252 * 9 7 5 13 13 C 1.34782 * 119.99866 * 262.47570 * 3 2 1 14 14 O 1.21518 * 120.00397 * 174.16577 * 13 3 2 15 15 C 1.48075 * 119.99720 * 354.16726 * 13 3 2 16 16 C 1.39586 * 119.96307 * 48.76671 * 15 13 3 17 17 C 1.37844 * 120.17113 * 179.11776 * 16 15 13 18 18 C 1.39776 * 119.68055 * 0.29601 * 17 16 15 19 19 C 1.39370 * 120.00440 * 0.92605 * 18 17 16 20 20 C 1.37588 * 120.39128 * 358.70412 * 19 18 17 21 21 C 1.51906 * 119.57304 * 177.42375 * 19 18 17 22 22 C 1.52432 * 109.27440 * 69.03877 * 21 19 18 23 23 C 1.52116 * 111.49748 * 272.47969 * 22 21 19 24 24 C 1.50798 * 114.14880 * 71.57964 * 23 22 21 25 25 C 1.47545 * 120.38526 * 181.95214 * 18 17 16 26 26 O 1.21225 * 121.23967 * 293.09192 * 25 18 17 27 27 H 1.09002 * 109.46829 * 47.20858 * 1 2 3 28 28 H 1.09000 * 109.47242 * 167.20732 * 1 2 3 29 29 H 1.08992 * 109.47534 * 287.20967 * 1 2 3 30 30 H 1.08993 * 109.47797 * 239.99720 * 2 1 3 31 31 H 1.09008 * 109.46859 * 119.99200 * 2 1 3 32 32 H 1.08999 * 109.48003 * 149.99999 * 4 3 2 33 33 H 1.09001 * 109.47114 * 29.99558 * 4 3 2 34 34 H 0.96995 * 120.00144 * 179.97438 * 8 7 5 35 35 H 1.08007 * 119.91225 * 359.37397 * 16 15 13 36 36 H 1.08002 * 120.15791 * 180.02562 * 17 16 15 37 37 H 1.07994 * 120.17046 * 180.45543 * 20 19 18 38 38 H 1.08993 * 109.50922 * 188.98249 * 21 19 18 39 39 H 1.09003 * 109.50108 * 309.06336 * 21 19 18 40 40 H 1.09010 * 109.06982 * 32.99390 * 22 21 19 41 41 H 1.08997 * 109.07586 * 151.95097 * 22 21 19 42 42 H 1.09006 * 108.55212 * 192.78672 * 23 22 21 43 43 H 1.09005 * 108.54928 * 310.37251 * 23 22 21 44 44 H 1.09004 * 109.36664 * 55.73670 * 24 23 22 45 45 H 1.08997 * 109.37215 * 175.48864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1059 2.1273 1.2577 5 6 0.8078 2.8527 1.5029 6 1 -0.0015 2.7662 0.7932 7 6 0.6532 3.6258 2.6339 8 7 1.6386 3.7308 3.4986 9 14 -0.9560 4.5244 2.9383 10 1 -1.8726 3.6496 3.7127 11 1 -0.6913 5.7673 3.7065 12 1 -1.5834 4.8704 1.6375 13 6 2.3870 1.9656 -1.1572 14 8 2.6908 3.1421 -1.1740 15 6 2.4218 1.1741 -2.4081 16 6 1.3306 0.3778 -2.7599 17 6 1.3511 -0.3467 -3.9324 18 6 2.4724 -0.2851 -4.7646 19 6 3.5705 0.4909 -4.3981 20 6 3.5491 1.2206 -3.2318 21 6 4.8069 0.5045 -5.2805 22 6 4.4845 1.2199 -6.5873 23 6 3.9124 0.2618 -7.6210 24 6 2.5095 -0.2032 -7.3213 25 6 2.4937 -1.0201 -6.0438 26 8 2.4982 -2.2320 -6.0725 27 1 -0.3633 0.6981 -0.7542 28 1 -0.3634 -1.0021 -0.2275 29 1 -0.3634 0.3040 0.9816 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.9196 2.8498 1.1958 33 1 2.2960 1.4353 2.0781 34 1 1.5300 4.2750 4.2941 35 1 0.4664 0.3325 -2.1136 36 1 0.5065 -0.9624 -4.2045 37 1 4.3991 1.8264 -2.9549 38 1 5.6139 1.0283 -4.7683 39 1 5.1144 -0.5197 -5.4919 40 1 3.7577 2.0085 -6.3917 41 1 5.3963 1.6677 -6.9827 42 1 3.9133 0.7578 -8.5917 43 1 4.5618 -0.6117 -7.6811 44 1 1.8587 0.6633 -7.2045 45 1 2.1485 -0.8180 -8.1458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290531442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:04 Heat of formation + Delta-G solvation = -72.047665 kcal Electronic energy + Delta-G solvation = -26392.587610 eV Core-core repulsion = 22759.855147 eV Total energy + Delta-G solvation = -3632.732463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84581 -40.81568 -39.01661 -37.21155 -36.88359 -34.88824 -33.25134 -32.58478 -31.63895 -30.44411 -29.33571 -26.52174 -25.77218 -24.55404 -24.13172 -23.29566 -21.78634 -20.82145 -19.96444 -18.72381 -18.28659 -17.98330 -17.39659 -17.10364 -16.46006 -16.34229 -16.02973 -15.61962 -15.23361 -15.05399 -14.85469 -14.76787 -14.58464 -14.43371 -14.23103 -13.94520 -13.73436 -13.70231 -13.44025 -13.24282 -13.02919 -12.73901 -12.64017 -12.55291 -12.31175 -12.20197 -11.96046 -11.78108 -11.67472 -11.63567 -11.57201 -10.93830 -10.63807 -10.63084 -10.06872 -9.75740 -9.53795 -8.21989 -6.34801 -0.35219 0.24499 0.82306 1.36113 1.39045 1.49123 1.72110 2.18643 2.39931 2.55206 2.90802 3.08141 3.46193 3.53634 3.72567 3.83936 3.94657 4.03538 4.09619 4.15386 4.22702 4.35791 4.39954 4.48115 4.51342 4.54808 4.67979 4.72085 4.86938 4.92434 4.95386 4.97222 5.01049 5.04286 5.11859 5.16737 5.20211 5.22179 5.28200 5.35049 5.42509 5.48873 5.56866 5.70639 5.80802 6.05598 6.31325 6.62535 6.73569 7.21718 7.38249 8.85815 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.003162 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.736598 B = 8852.388724 C = 9268.360503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.592 5.592 4 C 0.261 3.739 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.538 3.462 14 O -0.587 6.587 15 C -0.110 4.110 16 C -0.106 4.106 17 C -0.080 4.080 18 C -0.148 4.148 19 C -0.049 4.049 20 C -0.082 4.082 21 C -0.089 4.089 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.157 4.157 25 C 0.419 3.581 26 O -0.475 6.475 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.078 0.922 32 H -0.002 1.002 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -11.342 -22.602 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.140 3.860 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.326 3.674 14 O -0.469 6.469 15 C -0.113 4.113 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.149 4.149 19 C -0.050 4.050 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.156 4.156 23 C -0.147 4.147 24 C -0.195 4.195 25 C 0.296 3.704 26 O -0.349 6.349 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.016 0.984 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.190 -11.320 -22.420 25.211 hybrid contribution -0.635 0.989 1.217 1.692 sum 1.555 -10.331 -21.203 23.637 Atomic orbital electron populations 1.22244 0.94827 1.02822 1.02215 1.21931 0.95752 0.81140 1.03773 1.48249 1.61736 1.14909 1.07301 1.18813 0.96149 0.90781 0.80210 1.21642 0.99798 1.29321 1.06264 0.92567 1.25832 1.00476 0.97147 0.95725 1.70050 1.33566 1.41071 1.12293 0.85451 0.79300 0.78159 0.78137 1.18829 1.20774 1.19814 1.19025 0.77240 0.86627 0.84474 1.90722 1.51741 1.17873 1.86526 1.20090 0.97462 0.98873 0.94883 1.21782 0.98202 0.94811 0.97641 1.21302 0.98048 0.98177 0.92268 1.20656 0.96179 1.00414 0.97616 1.20092 0.96153 0.94107 0.94607 1.21014 0.97238 0.98502 0.93323 1.21005 0.93561 1.02523 0.95540 1.21337 1.02747 0.98341 0.93222 1.20883 0.93319 0.99914 1.00615 1.21954 1.00980 1.01660 0.94908 1.23231 0.67844 0.88191 0.91113 1.90554 1.36801 1.17354 1.90231 0.93052 0.88343 0.93188 0.88341 0.90346 0.98417 0.95590 0.92479 0.83240 0.82606 0.85238 0.89246 0.90159 0.91549 0.88838 0.88175 0.91607 0.87543 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 8.68 71.98 0.62 -4.16 16 2 C 0.10 3.11 5.64 86.38 0.49 3.59 16 3 N -0.59 -25.98 2.47 -829.31 -2.05 -28.04 16 4 C 0.26 14.23 5.15 85.64 0.44 14.67 16 5 C -0.53 -30.55 8.83 25.60 0.23 -30.32 16 6 H 0.06 3.19 7.71 -2.91 -0.02 3.17 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 9 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.54 23.81 7.23 86.85 0.63 24.44 16 14 O -0.59 -31.86 16.67 -3.77 -0.06 -31.92 16 15 C -0.11 -3.63 4.98 -19.99 -0.10 -3.73 16 16 C -0.11 -2.82 7.47 22.50 0.17 -2.65 16 17 C -0.08 -1.73 9.81 22.55 0.22 -1.51 16 18 C -0.15 -3.15 5.48 -20.18 -0.11 -3.26 16 19 C -0.05 -1.09 5.10 -19.36 -0.10 -1.19 16 20 C -0.08 -2.33 9.35 22.47 0.21 -2.12 16 21 C -0.09 -1.40 5.41 30.05 0.16 -1.24 16 22 C -0.12 -1.36 5.58 30.11 0.17 -1.19 16 23 C -0.11 -1.01 5.29 29.59 0.16 -0.86 16 24 C -0.16 -1.82 5.79 29.43 0.17 -1.65 16 25 C 0.42 7.95 5.52 28.44 0.16 8.10 16 26 O -0.48 -11.92 17.93 -2.86 -0.05 -11.97 16 27 H 0.05 1.57 6.37 -2.39 -0.02 1.55 16 28 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.73 7.94 -2.39 -0.02 1.71 16 30 H 0.10 2.68 5.24 -2.39 -0.01 2.66 16 31 H 0.08 2.44 8.00 -2.38 -0.02 2.42 16 32 H 0.00 -0.14 7.51 -2.39 -0.02 -0.16 16 33 H 0.03 1.43 7.97 -2.39 -0.02 1.41 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.15 3.82 4.00 -2.91 -0.01 3.80 16 36 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.13 3.74 7.98 -2.91 -0.02 3.71 16 38 H 0.09 1.30 7.92 -2.39 -0.02 1.28 16 39 H 0.08 1.21 7.58 -2.39 -0.02 1.19 16 40 H 0.07 0.88 7.84 -2.38 -0.02 0.86 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.07 0.64 7.92 -2.38 -0.02 0.62 16 44 H 0.11 1.03 8.13 -2.39 -0.02 1.01 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -76.82 363.04 5.11 -71.70 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.00 Total: 11.40 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 3.97 Total: -2.19 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -1.77 Total: -84.13 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.11 Total: -43.89 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.82 5.11 -71.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290531442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.343 kcal (2) G-P(sol) polarization free energy of solvation -76.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds