Wall clock time and date at job start Tue Mar 31 2020 10:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00001 * 2 1 4 4 N 1.46492 * 109.47397 * 124.99545 * 3 2 1 5 5 C 1.46502 * 120.00494 * 270.00247 * 4 3 2 6 6 C 1.50699 * 109.46721 * 270.00098 * 5 4 3 7 7 H 1.07999 * 120.00285 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00334 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99689 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46981 * 90.00212 * 10 8 6 12 12 H 1.48505 * 109.47048 * 210.00264 * 10 8 6 13 13 H 1.48500 * 109.47259 * 330.00064 * 10 8 6 14 14 C 1.34784 * 120.00258 * 90.00051 * 4 3 2 15 15 O 1.21712 * 120.00259 * 180.02562 * 14 4 3 16 16 C 1.46265 * 119.99503 * 359.97438 * 14 4 3 17 17 C 1.34974 * 119.99818 * 179.97438 * 16 14 4 18 18 C 1.46996 * 120.00106 * 179.72770 * 17 16 14 19 19 C 1.39977 * 120.10974 * 359.72472 * 18 17 16 20 20 C 1.37661 * 119.88183 * 179.79112 * 19 18 17 21 21 C 1.39021 * 120.11446 * 0.48523 * 20 19 18 22 22 O 1.35741 * 119.88530 * 179.76829 * 21 20 19 23 23 C 1.42896 * 117.00135 * 359.97438 * 22 21 20 24 24 C 1.53006 * 109.47276 * 180.02562 * 23 22 21 25 25 C 1.39018 * 120.22829 * 359.74518 * 21 20 19 26 26 C 1.37660 * 120.11349 * 0.02562 * 25 21 20 27 27 H 1.07997 * 120.00205 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99586 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99965 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47035 * 4.99481 * 3 2 1 31 31 H 1.09000 * 109.46819 * 244.99601 * 3 2 1 32 32 H 1.09003 * 109.46716 * 29.99677 * 5 4 3 33 33 H 1.08996 * 109.47704 * 149.99767 * 5 4 3 34 34 H 0.96998 * 120.00660 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.99840 * 359.72761 * 16 14 4 36 36 H 1.08000 * 119.99559 * 359.72822 * 17 16 14 37 37 H 1.07996 * 120.05849 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.94315 * 180.20939 * 20 19 18 39 39 H 1.09008 * 109.46870 * 300.00020 * 23 22 21 40 40 H 1.08997 * 109.47486 * 60.00203 * 23 22 21 41 41 H 1.09000 * 109.46985 * 299.99883 * 24 23 22 42 42 H 1.08997 * 109.47056 * 59.99499 * 24 23 22 43 43 H 1.08992 * 109.47244 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.94216 * 180.02562 * 25 21 20 45 45 H 1.07998 * 120.05948 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3039 3.8370 1.6366 8 6 2.5183 4.0670 3.6081 9 7 2.7668 5.3575 3.6563 10 14 1.7225 3.2139 5.0670 11 1 2.7777 2.7230 5.9893 12 1 0.8458 4.1744 5.7842 13 1 0.9112 2.0663 4.5873 14 6 4.2497 0.8663 0.9825 15 8 5.0224 0.8882 1.9227 16 6 4.6838 0.3335 -0.3087 17 6 5.9417 -0.1324 -0.4580 18 6 6.3762 -0.6733 -1.7539 19 6 5.4855 -0.7117 -2.8330 20 6 5.8986 -1.2153 -4.0457 21 6 7.1948 -1.6946 -4.1969 22 8 7.5958 -2.1945 -5.3935 23 6 6.6343 -2.1972 -6.4506 24 6 7.2638 -2.7936 -7.7112 25 6 8.0818 -1.6632 -3.1270 26 6 7.6801 -1.1572 -1.9114 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 1.4886 1.6967 2.5459 33 1 3.0988 1.3605 3.2260 34 1 2.5373 5.8664 4.4495 35 1 3.9965 0.3093 -1.1414 36 1 6.6290 -0.1077 0.3747 37 1 4.4771 -0.3434 -2.7154 38 1 5.2132 -1.2423 -4.8800 39 1 5.7728 -2.7968 -6.1565 40 1 6.3137 -1.1752 -6.6528 41 1 8.1255 -2.1944 -8.0053 42 1 7.5841 -3.8156 -7.5087 43 1 6.5305 -2.7952 -8.5176 44 1 9.0878 -2.0363 -3.2497 45 1 8.3701 -1.1329 -1.0809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292192998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:15 Heat of formation + Delta-G solvation = -6.909157 kcal Electronic energy + Delta-G solvation = -24848.230411 eV Core-core repulsion = 21218.322566 eV Total energy + Delta-G solvation = -3629.907845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41069 -39.20972 -37.95088 -35.77473 -33.78176 -33.09892 -32.11037 -31.94009 -31.26697 -29.24299 -27.91508 -25.60531 -24.44469 -24.11113 -22.58850 -21.71472 -20.37211 -19.80698 -18.64822 -18.11868 -17.06211 -16.86461 -16.47585 -16.09597 -15.64033 -15.20029 -14.72505 -14.66994 -14.32271 -14.00649 -13.81187 -13.76266 -13.50532 -13.06958 -13.02201 -12.94519 -12.48790 -12.33648 -12.26266 -12.03960 -11.72724 -11.61086 -11.54407 -11.28497 -11.17233 -10.92560 -10.88782 -10.50787 -10.14311 -9.79005 -9.54093 -9.27241 -9.26573 -9.07867 -8.56800 -7.95677 -7.66033 -6.06620 -4.05169 0.62039 1.14992 2.11292 2.37120 2.84680 3.31073 3.37068 3.39144 3.59930 3.90058 4.05269 4.41665 4.43119 4.49202 4.58430 4.65911 4.73336 4.81269 5.01288 5.08128 5.11368 5.20440 5.23773 5.25616 5.32263 5.34548 5.38521 5.53059 5.59506 5.65818 5.79526 5.94088 5.96794 6.09591 6.11788 6.16062 6.43265 6.50210 6.67834 6.72126 6.77786 6.85111 6.99152 7.11613 7.37878 7.63302 8.26239 8.48966 8.94764 9.00664 9.53681 11.06692 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.002486 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.884401 B =11259.479141 C =11987.243177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.135 3.865 4 N -0.584 5.584 5 C 0.217 3.783 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.538 3.462 15 O -0.543 6.543 16 C -0.197 4.197 17 C -0.039 4.039 18 C -0.099 4.099 19 C -0.064 4.064 20 C -0.210 4.210 21 C 0.132 3.868 22 O -0.316 6.316 23 C 0.053 3.947 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.059 4.059 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -17.058 -21.018 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.313 5.313 5 C 0.096 3.904 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.327 3.673 15 O -0.422 6.422 16 C -0.218 4.218 17 C -0.059 4.059 18 C -0.100 4.100 19 C -0.082 4.082 20 C -0.228 4.228 21 C 0.087 3.913 22 O -0.230 6.230 23 C -0.022 4.022 24 C -0.209 4.209 25 C -0.173 4.173 26 C -0.077 4.077 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.460 -16.931 -20.444 26.916 hybrid contribution -0.819 -0.174 0.682 1.080 sum 3.641 -17.105 -19.761 26.388 Atomic orbital electron populations 1.23843 0.95850 1.01809 1.00678 1.23492 0.96404 0.99130 0.99793 1.20636 0.93018 0.95326 0.89848 1.47789 1.10664 1.59913 1.12948 1.19660 0.94900 0.95163 0.80652 1.21332 1.41054 0.91093 1.03125 0.90715 1.24855 0.95321 0.94732 0.98125 1.69892 1.47843 1.06581 1.29275 0.86859 0.79882 0.79667 0.83360 1.19898 1.21084 1.19033 1.18139 0.82219 0.78707 0.88210 1.90779 1.52572 1.56918 1.41958 1.23213 0.97519 1.03180 0.97897 1.22235 0.95967 0.92843 0.94868 1.19013 0.94310 1.02741 0.93887 1.21240 0.99425 0.96031 0.91510 1.21156 0.95710 1.06557 0.99410 1.19179 0.92920 0.93777 0.85440 1.86025 1.40867 1.77929 1.18202 1.22811 0.91643 1.01208 0.86558 1.21779 1.02047 1.01986 0.95128 1.20348 0.99952 1.05601 0.91359 1.21208 0.95013 0.94904 0.96587 0.88218 0.88754 0.87613 0.89216 0.90347 0.95199 0.94525 0.92585 0.85701 0.84716 0.85135 0.85331 0.91920 0.91861 0.91485 0.91512 0.90312 0.84998 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.29 9.85 -36.03 -0.35 -2.65 16 3 C 0.14 2.17 5.55 -5.20 -0.03 2.14 16 4 N -0.58 -12.26 2.44 -178.14 -0.43 -12.69 16 5 C 0.22 5.41 4.23 -5.19 -0.02 5.38 16 6 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 7 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 10 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.54 11.32 7.60 -13.03 -0.10 11.22 16 15 O -0.54 -13.68 15.81 5.18 0.08 -13.60 16 16 C -0.20 -3.09 8.60 -37.52 -0.32 -3.41 16 17 C -0.04 -0.56 9.45 -37.19 -0.35 -0.92 16 18 C -0.10 -1.20 5.87 -105.05 -0.62 -1.81 16 19 C -0.06 -0.69 9.40 -39.14 -0.37 -1.06 16 20 C -0.21 -2.04 9.01 -39.50 -0.36 -2.40 16 21 C 0.13 1.38 6.70 -39.00 -0.26 1.12 16 22 O -0.32 -3.07 10.13 -18.93 -0.19 -3.26 16 23 C 0.05 0.34 5.45 37.16 0.20 0.55 16 24 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 25 C -0.15 -1.57 9.97 -39.50 -0.39 -1.97 16 26 C -0.06 -0.63 9.79 -39.14 -0.38 -1.01 16 27 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 28 H 0.09 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.08 1.06 6.10 -51.93 -0.32 0.74 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.13 1.58 4.22 -52.49 -0.22 1.35 16 36 H 0.14 2.04 7.52 -52.49 -0.39 1.64 16 37 H 0.13 1.22 6.16 -52.49 -0.32 0.90 16 38 H 0.13 0.96 6.27 -52.49 -0.33 0.63 16 39 H 0.06 0.35 7.65 -51.92 -0.40 -0.04 16 40 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -35.22 380.16 -8.18 -43.39 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.47 Total: 1.03 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.00 Total: -10.66 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.34 Total: -39.81 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.11 Total: -16.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.22 -8.18 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292192998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.486 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds