Wall clock time and date at job start Tue Mar 31 2020 10:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00001 * 2 1 4 4 N 1.46492 * 109.47397 * 124.99545 * 3 2 1 5 5 C 1.46502 * 120.00494 * 270.00247 * 4 3 2 6 6 C 1.50699 * 109.46721 * 270.00098 * 5 4 3 7 7 H 1.07999 * 120.00285 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00334 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99689 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46981 * 90.00212 * 10 8 6 12 12 H 1.48505 * 109.47048 * 210.00264 * 10 8 6 13 13 H 1.48500 * 109.47259 * 330.00064 * 10 8 6 14 14 C 1.34784 * 120.00258 * 90.00051 * 4 3 2 15 15 O 1.21712 * 120.00259 * 180.02562 * 14 4 3 16 16 C 1.46265 * 119.99503 * 359.97438 * 14 4 3 17 17 C 1.34974 * 119.99818 * 179.97438 * 16 14 4 18 18 C 1.46996 * 120.00106 * 179.72770 * 17 16 14 19 19 C 1.39977 * 120.10974 * 359.72472 * 18 17 16 20 20 C 1.37661 * 119.88183 * 179.79112 * 19 18 17 21 21 C 1.39021 * 120.11446 * 0.48523 * 20 19 18 22 22 O 1.35741 * 119.88530 * 179.76829 * 21 20 19 23 23 C 1.42896 * 117.00135 * 359.97438 * 22 21 20 24 24 C 1.53006 * 109.47276 * 180.02562 * 23 22 21 25 25 C 1.39018 * 120.22829 * 359.74518 * 21 20 19 26 26 C 1.37660 * 120.11349 * 0.02562 * 25 21 20 27 27 H 1.07997 * 120.00205 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99586 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99965 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47035 * 4.99481 * 3 2 1 31 31 H 1.09000 * 109.46819 * 244.99601 * 3 2 1 32 32 H 1.09003 * 109.46716 * 29.99677 * 5 4 3 33 33 H 1.08996 * 109.47704 * 149.99767 * 5 4 3 34 34 H 0.96998 * 120.00660 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.99840 * 359.72761 * 16 14 4 36 36 H 1.08000 * 119.99559 * 359.72822 * 17 16 14 37 37 H 1.07996 * 120.05849 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.94315 * 180.20939 * 20 19 18 39 39 H 1.09008 * 109.46870 * 300.00020 * 23 22 21 40 40 H 1.08997 * 109.47486 * 60.00203 * 23 22 21 41 41 H 1.09000 * 109.46985 * 299.99883 * 24 23 22 42 42 H 1.08997 * 109.47056 * 59.99499 * 24 23 22 43 43 H 1.08992 * 109.47244 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.94216 * 180.02562 * 25 21 20 45 45 H 1.07998 * 120.05948 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3039 3.8370 1.6366 8 6 2.5183 4.0670 3.6081 9 7 2.7668 5.3575 3.6563 10 14 1.7225 3.2139 5.0670 11 1 2.7777 2.7230 5.9893 12 1 0.8458 4.1744 5.7842 13 1 0.9112 2.0663 4.5873 14 6 4.2497 0.8663 0.9825 15 8 5.0224 0.8882 1.9227 16 6 4.6838 0.3335 -0.3087 17 6 5.9417 -0.1324 -0.4580 18 6 6.3762 -0.6733 -1.7539 19 6 5.4855 -0.7117 -2.8330 20 6 5.8986 -1.2153 -4.0457 21 6 7.1948 -1.6946 -4.1969 22 8 7.5958 -2.1945 -5.3935 23 6 6.6343 -2.1972 -6.4506 24 6 7.2638 -2.7936 -7.7112 25 6 8.0818 -1.6632 -3.1270 26 6 7.6801 -1.1572 -1.9114 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 1.4886 1.6967 2.5459 33 1 3.0988 1.3605 3.2260 34 1 2.5373 5.8664 4.4495 35 1 3.9965 0.3093 -1.1414 36 1 6.6290 -0.1077 0.3747 37 1 4.4771 -0.3434 -2.7154 38 1 5.2132 -1.2423 -4.8800 39 1 5.7728 -2.7968 -6.1565 40 1 6.3137 -1.1752 -6.6528 41 1 8.1255 -2.1944 -8.0053 42 1 7.5841 -3.8156 -7.5087 43 1 6.5305 -2.7952 -8.5176 44 1 9.0878 -2.0363 -3.2497 45 1 8.3701 -1.1329 -1.0809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292192998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:14 Heat of formation + Delta-G solvation = -27.877278 kcal Electronic energy + Delta-G solvation = -24849.139657 eV Core-core repulsion = 21218.322566 eV Total energy + Delta-G solvation = -3630.817091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19509 -40.73546 -38.77387 -37.28327 -35.19216 -34.59868 -33.74983 -32.57175 -32.03001 -30.72924 -29.30189 -26.94985 -25.63586 -24.93353 -23.94651 -22.60462 -21.61411 -20.88374 -19.54439 -19.32419 -19.08625 -18.34026 -17.42508 -17.04942 -16.67834 -16.36884 -16.17966 -15.90872 -15.52329 -15.47998 -14.91522 -14.55007 -14.45656 -14.36522 -14.24000 -14.07932 -13.69541 -13.44274 -13.22657 -13.12819 -13.08559 -12.87313 -12.68237 -12.51876 -12.48919 -12.26909 -11.94663 -11.83155 -11.74512 -11.64239 -10.84418 -10.80924 -10.76648 -10.31642 -10.04945 -9.47780 -8.78634 -8.34524 -6.39545 -0.39657 0.37492 1.03215 1.30365 1.34626 1.35950 1.44645 2.22352 2.30290 2.33925 2.48476 2.89602 2.99390 3.58891 3.70334 3.88449 4.02270 4.07679 4.07864 4.14941 4.21895 4.26768 4.28990 4.40168 4.40977 4.47014 4.59437 4.74916 4.84297 4.89149 4.90774 4.96041 5.00831 5.07193 5.08958 5.18148 5.21439 5.32757 5.42619 5.44863 5.58277 5.67271 5.72225 5.72986 5.92655 6.23954 6.41445 6.61302 6.68322 7.20378 7.39943 8.82330 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.002486 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.884401 B =11259.479141 C =11987.243177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.182 4.182 3 C 0.131 3.869 4 N -0.591 5.591 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.029 0.971 8 C 0.011 3.989 9 N -0.944 5.944 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.239 1.239 14 C 0.529 3.471 15 O -0.602 6.602 16 C -0.217 4.217 17 C -0.012 4.012 18 C -0.125 4.125 19 C -0.060 4.060 20 C -0.211 4.211 21 C 0.133 3.867 22 O -0.328 6.328 23 C 0.042 3.958 24 C -0.150 4.150 25 C -0.165 4.165 26 C -0.057 4.057 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.269 0.731 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.146 0.854 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -19.462 -22.989 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.009 3.991 4 N -0.320 5.320 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.584 5.584 10 Si 0.770 3.230 11 H -0.202 1.202 12 H -0.197 1.197 13 H -0.163 1.163 14 C 0.321 3.679 15 O -0.486 6.486 16 C -0.237 4.237 17 C -0.032 4.032 18 C -0.125 4.125 19 C -0.078 4.078 20 C -0.230 4.230 21 C 0.087 3.913 22 O -0.242 6.242 23 C -0.032 4.032 24 C -0.207 4.207 25 C -0.183 4.183 26 C -0.075 4.075 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.176 0.824 36 H 0.137 0.863 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.163 0.837 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.011 -19.353 -22.481 29.816 hybrid contribution -0.250 0.557 1.070 1.232 sum 2.761 -18.795 -21.411 28.624 Atomic orbital electron populations 1.24078 0.95384 1.03008 0.98010 1.23303 0.96755 0.97951 1.02126 1.20884 0.92512 0.96655 0.89048 1.47865 1.11778 1.59424 1.12920 1.19287 0.95394 0.92188 0.82635 1.21540 1.40566 0.93376 1.01907 0.95308 1.25851 0.95969 0.95401 1.01505 1.70042 1.49355 1.08424 1.30547 0.85721 0.79081 0.79371 0.78832 1.20202 1.19746 1.16266 1.18994 0.81565 0.77841 0.89508 1.90730 1.54022 1.59584 1.44256 1.22963 0.98828 1.05743 0.96183 1.22314 0.95014 0.90359 0.95518 1.18942 0.95467 1.04916 0.93220 1.21447 0.99820 0.95263 0.91295 1.21405 0.95907 1.05880 0.99782 1.19411 0.93186 0.92891 0.85778 1.86031 1.42238 1.77547 1.18433 1.23120 0.91684 1.02209 0.86183 1.21812 1.02450 1.01524 0.94954 1.20554 1.00811 1.05723 0.91223 1.21386 0.94758 0.94103 0.97294 0.88206 0.86328 0.86626 0.90381 0.87894 0.93440 0.96486 0.92228 0.82426 0.86323 0.83646 0.82829 0.90764 0.90945 0.91931 0.91805 0.88241 0.83659 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.18 -4.54 9.85 25.64 0.25 -4.28 16 3 C 0.13 4.08 5.55 85.63 0.48 4.56 16 4 N -0.59 -25.25 2.44 -835.71 -2.04 -27.28 16 5 C 0.23 11.53 4.23 85.63 0.36 11.89 16 6 C -0.54 -32.38 9.94 25.60 0.25 -32.13 16 7 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 8 C 0.01 0.65 5.47 84.66 0.46 1.11 16 9 N -0.94 -60.57 13.96 21.45 0.30 -60.27 16 10 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 14 C 0.53 22.92 7.60 86.33 0.66 23.58 16 15 O -0.60 -31.95 15.81 -4.39 -0.07 -32.02 16 16 C -0.22 -6.74 8.60 23.61 0.20 -6.54 16 17 C -0.01 -0.34 9.45 23.82 0.23 -0.12 16 18 C -0.13 -2.86 5.87 -20.14 -0.12 -2.98 16 19 C -0.06 -1.15 9.40 22.55 0.21 -0.94 16 20 C -0.21 -3.51 9.01 22.32 0.20 -3.31 16 21 C 0.13 2.47 6.70 22.64 0.15 2.62 16 22 O -0.33 -5.62 10.13 -90.65 -0.92 -6.54 16 23 C 0.04 0.43 5.45 71.98 0.39 0.83 16 24 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 25 C -0.16 -3.08 9.97 22.32 0.22 -2.86 16 26 C -0.06 -1.16 9.79 22.55 0.22 -0.94 16 27 H 0.10 2.13 7.84 -2.91 -0.02 2.11 16 28 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.08 2.58 7.72 -2.38 -0.02 2.57 16 31 H 0.10 2.63 6.10 -2.39 -0.01 2.61 16 32 H 0.05 2.23 7.13 -2.39 -0.02 2.21 16 33 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 34 H 0.27 15.99 8.31 -92.71 -0.77 15.21 16 35 H 0.16 3.69 4.22 -2.91 -0.01 3.67 16 36 H 0.12 3.75 7.52 -2.91 -0.02 3.72 16 37 H 0.15 2.26 6.16 -2.91 -0.02 2.24 16 38 H 0.15 1.71 6.27 -2.91 -0.02 1.69 16 39 H 0.07 0.60 7.65 -2.38 -0.02 0.58 16 40 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 41 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -80.63 380.16 5.97 -74.66 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.92 Total: 16.56 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 5.89 Total: -12.44 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -1.74 Total: -87.55 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.99 Total: -38.56 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -80.63 5.97 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292192998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.787 kcal (2) G-P(sol) polarization free energy of solvation -80.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds