Wall clock time and date at job start Tue Mar 31 2020 11:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50708 * 120.00075 * 2 1 4 4 N 1.46500 * 109.46858 * 125.25943 * 3 2 1 5 5 C 1.46505 * 119.99947 * 265.64237 * 4 3 2 6 6 C 1.50700 * 109.46868 * 270.00315 * 5 4 3 7 7 H 1.07997 * 120.00443 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99881 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00248 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00174 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47083 * 89.99961 * 10 8 6 12 12 H 1.48492 * 109.47444 * 210.00212 * 10 8 6 13 13 H 1.48503 * 109.47017 * 330.00598 * 10 8 6 14 14 C 1.34773 * 120.00165 * 85.64452 * 4 3 2 15 15 O 1.21279 * 120.00194 * 184.84736 * 14 4 3 16 16 C 1.50701 * 119.99837 * 4.84475 * 14 4 3 17 17 H 1.09000 * 110.26897 * 332.24366 * 16 14 4 18 18 C 1.54335 * 110.30268 * 94.32142 * 16 14 4 19 19 C 1.54339 * 102.39851 * 145.29204 * 18 16 14 20 20 C 1.51388 * 105.17277 * 333.63020 * 19 18 16 21 21 C 1.38549 * 130.32043 * 197.20210 * 20 19 18 22 22 C 1.38008 * 120.28954 * 180.02562 * 21 20 19 23 23 C 1.38745 * 119.87881 * 0.27060 * 22 21 20 24 24 O 1.35897 * 120.09232 * 179.70869 * 23 22 21 25 25 C 1.42900 * 117.00053 * 359.97438 * 24 23 22 26 26 C 1.38600 * 119.81470 * 359.44819 * 23 22 21 27 27 C 1.38263 * 109.74267 * 17.19767 * 20 19 18 28 28 H 1.07998 * 120.00034 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99841 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00482 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46615 * 5.26506 * 3 2 1 32 32 H 1.08996 * 109.47240 * 245.25744 * 3 2 1 33 33 H 1.09001 * 109.47145 * 29.99692 * 5 4 3 34 34 H 1.08995 * 109.46870 * 150.00113 * 5 4 3 35 35 H 0.96992 * 120.00594 * 179.97438 * 9 8 6 36 36 H 1.09001 * 110.82567 * 27.06311 * 18 16 14 37 37 H 1.09001 * 110.99455 * 263.59417 * 18 16 14 38 38 H 1.08998 * 110.30805 * 214.70320 * 19 18 16 39 39 H 1.09002 * 110.38696 * 92.59683 * 19 18 16 40 40 H 1.08001 * 119.85785 * 359.97438 * 21 20 19 41 41 H 1.08007 * 120.06209 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47038 * 300.00276 * 25 24 23 43 43 H 1.09000 * 109.47027 * 60.00756 * 25 24 23 44 44 H 1.09002 * 109.46971 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.91619 * 180.25352 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9982 1.3293 1.1278 5 6 2.6003 1.9459 2.3959 6 6 2.9720 3.4063 2.3827 7 1 3.4565 3.8325 1.5167 8 6 2.6944 4.1982 3.4767 9 7 3.0192 5.4726 3.4655 10 14 1.8570 3.4611 4.9749 11 1 2.8861 2.9517 5.9167 12 1 1.0416 4.5030 5.6490 13 1 0.9778 2.3422 4.5502 14 6 4.2241 0.7844 0.9989 15 8 4.9653 0.7254 1.9571 16 6 4.6738 0.2482 -0.3357 17 1 3.8138 -0.0767 -0.9213 18 6 5.4695 1.3243 -1.1045 19 6 6.5255 0.4838 -1.8532 20 6 6.7075 -0.7629 -1.0138 21 6 7.7247 -1.7035 -1.0144 22 6 7.6808 -2.7768 -0.1480 23 6 6.6108 -2.9181 0.7238 24 8 6.5602 -3.9765 1.5746 25 6 7.6433 -4.9070 1.5177 26 6 5.5962 -1.9738 0.7282 27 6 5.6432 -0.8981 -0.1416 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3589 2.1314 0.0943 32 1 2.6177 1.4048 -0.9333 33 1 1.5227 1.8465 2.5259 34 1 3.1131 1.4479 3.2187 35 1 2.8237 6.0298 4.2349 36 1 5.9464 2.0204 -0.4146 37 1 4.8284 1.8562 -1.8075 38 1 7.4647 1.0324 -1.9241 39 1 6.1659 0.2208 -2.8480 40 1 8.5553 -1.5967 -1.6964 41 1 8.4761 -3.5077 -0.1513 42 1 7.7004 -5.3373 0.5180 43 1 8.5767 -4.3923 1.7458 44 1 7.4786 -5.7011 2.2460 45 1 4.7645 -2.0800 1.4089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292229113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:37 Heat of formation + Delta-G solvation = -19.719092 kcal Electronic energy + Delta-G solvation = -26509.258406 eV Core-core repulsion = 22878.795080 eV Total energy + Delta-G solvation = -3630.463326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71723 -39.37650 -37.99018 -35.72014 -34.70179 -33.19300 -32.09210 -31.45655 -29.16340 -28.51612 -27.73451 -26.48082 -25.48375 -22.84696 -22.72305 -20.98142 -20.74777 -19.92695 -18.48621 -17.57921 -16.88113 -16.77084 -16.30715 -15.77549 -15.61701 -15.45233 -14.68535 -14.57711 -14.33130 -14.18947 -13.78074 -13.46376 -13.13432 -12.95492 -12.66573 -12.60042 -12.27715 -12.17870 -11.85803 -11.75090 -11.63092 -11.58353 -11.36269 -11.26145 -11.08168 -10.93033 -10.64322 -10.53568 -10.47464 -10.12689 -9.54668 -9.27534 -9.02110 -8.67287 -8.57424 -7.97180 -7.71802 -6.07887 -4.06522 1.36914 1.48548 2.35936 3.18570 3.30949 3.31047 3.37064 3.39704 3.71238 3.96952 4.41309 4.46495 4.62470 4.81694 4.92217 4.99171 5.01685 5.06677 5.11908 5.25192 5.27472 5.30122 5.32588 5.34396 5.40049 5.48824 5.60699 5.66805 5.77949 5.88209 5.92896 5.96415 6.12380 6.17768 6.29881 6.33224 6.38922 6.69646 6.71838 6.73400 6.76705 6.84848 6.99088 7.37553 7.40625 7.62607 8.25151 8.47945 8.93375 8.99953 9.52931 11.05360 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.003927 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.178144 B = 7128.118802 C = 7367.503501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 C 0.135 3.865 4 N -0.589 5.589 5 C 0.216 3.784 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.518 3.482 15 O -0.530 6.530 16 C -0.075 4.075 17 H 0.105 0.895 18 C -0.106 4.106 19 C -0.073 4.073 20 C -0.129 4.129 21 C -0.072 4.072 22 C -0.208 4.208 23 C 0.123 3.877 24 O -0.317 6.317 25 C 0.029 3.971 26 C -0.118 4.118 27 C -0.028 4.028 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 -17.352 -12.742 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.320 5.320 5 C 0.096 3.904 6 C -0.567 4.567 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.304 3.696 15 O -0.406 6.406 16 C -0.097 4.097 17 H 0.123 0.877 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.129 4.129 21 C -0.090 4.090 22 C -0.227 4.227 23 C 0.078 3.922 24 O -0.231 6.231 25 C -0.066 4.066 26 C -0.136 4.136 27 C -0.028 4.028 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.735 -17.237 -11.939 21.496 hybrid contribution -0.241 -0.373 0.839 0.949 sum 4.495 -17.610 -11.100 21.296 Atomic orbital electron populations 1.23835 0.95817 1.01827 1.00528 1.23501 0.96487 0.99113 0.99940 1.20626 0.92964 0.95334 0.89948 1.47900 1.12844 1.56697 1.14516 1.19663 0.95260 0.93986 0.81514 1.21337 1.40020 0.91780 1.03589 0.90682 1.24835 0.95260 0.94685 0.98114 1.69891 1.47482 1.05431 1.30798 0.86877 0.80147 0.79169 0.83702 1.19910 1.21076 1.19011 1.20086 0.81808 0.78394 0.89351 1.90686 1.53123 1.56614 1.40156 1.20994 0.98205 0.94118 0.96347 0.87675 1.22253 0.96870 0.96533 0.98702 1.20967 0.99679 0.92655 0.97725 1.20465 0.95410 0.97693 0.99364 1.20282 0.97558 0.93070 0.98111 1.21031 0.99549 1.01568 1.00507 1.18732 0.94706 0.88125 0.90613 1.86073 1.45883 1.33943 1.57208 1.23015 0.89389 0.91813 1.02378 1.19741 0.99445 0.93527 1.00916 1.19801 0.95200 0.93411 0.94419 0.88207 0.88726 0.87678 0.89061 0.90446 0.95254 0.94519 0.92579 0.89753 0.89756 0.90543 0.90267 0.86046 0.85559 0.92854 0.92726 0.88438 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.01 0.42 -1.80 16 2 C -0.17 -2.32 9.33 -36.02 -0.34 -2.65 16 3 C 0.13 2.12 5.47 -5.19 -0.03 2.09 16 4 N -0.59 -12.12 2.45 -176.43 -0.43 -12.56 16 5 C 0.22 5.35 4.25 -5.19 -0.02 5.33 16 6 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 10 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.92 16 14 C 0.52 10.70 6.48 -10.99 -0.07 10.62 16 15 O -0.53 -13.36 15.65 5.56 0.09 -13.28 16 16 C -0.08 -1.18 2.40 -91.89 -0.22 -1.40 16 17 H 0.11 1.38 5.92 -51.93 -0.31 1.07 16 18 C -0.11 -1.46 6.54 -25.33 -0.17 -1.63 16 19 C -0.07 -0.84 6.77 -26.84 -0.18 -1.03 16 20 C -0.13 -1.77 6.14 -104.16 -0.64 -2.41 16 21 C -0.07 -0.88 10.03 -39.55 -0.40 -1.28 16 22 C -0.21 -2.57 9.04 -39.48 -0.36 -2.92 16 23 C 0.12 1.80 6.68 -39.26 -0.26 1.54 16 24 O -0.32 -4.35 10.50 -19.42 -0.20 -4.55 16 25 C 0.03 0.25 9.81 101.05 0.99 1.25 16 26 C -0.12 -1.94 9.38 -39.38 -0.37 -2.31 16 27 C -0.03 -0.44 5.20 -104.21 -0.54 -0.98 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 29 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.11 1.37 7.94 -52.49 -0.42 0.95 16 31 H 0.09 1.48 7.69 -51.93 -0.40 1.08 16 32 H 0.08 1.02 6.50 -51.93 -0.34 0.68 16 33 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 34 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.19 6.31 -52.48 -0.33 0.86 16 42 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 43 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -35.33 370.49 -8.17 -43.49 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.68 Total: 2.05 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.63 Total: -11.02 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.34 Total: -39.46 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.12 Total: -17.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.33 -8.17 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292229113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.775 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds