Wall clock time and date at job start Tue Mar 31 2020 11:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50708 * 120.00075 * 2 1 4 4 N 1.46500 * 109.46858 * 125.25943 * 3 2 1 5 5 C 1.46505 * 119.99947 * 265.64237 * 4 3 2 6 6 C 1.50700 * 109.46868 * 270.00315 * 5 4 3 7 7 H 1.07997 * 120.00443 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99881 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00248 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00174 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47083 * 89.99961 * 10 8 6 12 12 H 1.48492 * 109.47444 * 210.00212 * 10 8 6 13 13 H 1.48503 * 109.47017 * 330.00598 * 10 8 6 14 14 C 1.34773 * 120.00165 * 85.64452 * 4 3 2 15 15 O 1.21279 * 120.00194 * 184.84736 * 14 4 3 16 16 C 1.50701 * 119.99837 * 4.84475 * 14 4 3 17 17 H 1.09000 * 110.26897 * 332.24366 * 16 14 4 18 18 C 1.54335 * 110.30268 * 94.32142 * 16 14 4 19 19 C 1.54339 * 102.39851 * 145.29204 * 18 16 14 20 20 C 1.51388 * 105.17277 * 333.63020 * 19 18 16 21 21 C 1.38549 * 130.32043 * 197.20210 * 20 19 18 22 22 C 1.38008 * 120.28954 * 180.02562 * 21 20 19 23 23 C 1.38745 * 119.87881 * 0.27060 * 22 21 20 24 24 O 1.35897 * 120.09232 * 179.70869 * 23 22 21 25 25 C 1.42900 * 117.00053 * 359.97438 * 24 23 22 26 26 C 1.38600 * 119.81470 * 359.44819 * 23 22 21 27 27 C 1.38263 * 109.74267 * 17.19767 * 20 19 18 28 28 H 1.07998 * 120.00034 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99841 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00482 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46615 * 5.26506 * 3 2 1 32 32 H 1.08996 * 109.47240 * 245.25744 * 3 2 1 33 33 H 1.09001 * 109.47145 * 29.99692 * 5 4 3 34 34 H 1.08995 * 109.46870 * 150.00113 * 5 4 3 35 35 H 0.96992 * 120.00594 * 179.97438 * 9 8 6 36 36 H 1.09001 * 110.82567 * 27.06311 * 18 16 14 37 37 H 1.09001 * 110.99455 * 263.59417 * 18 16 14 38 38 H 1.08998 * 110.30805 * 214.70320 * 19 18 16 39 39 H 1.09002 * 110.38696 * 92.59683 * 19 18 16 40 40 H 1.08001 * 119.85785 * 359.97438 * 21 20 19 41 41 H 1.08007 * 120.06209 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47038 * 300.00276 * 25 24 23 43 43 H 1.09000 * 109.47027 * 60.00756 * 25 24 23 44 44 H 1.09002 * 109.46971 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.91619 * 180.25352 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9982 1.3293 1.1278 5 6 2.6003 1.9459 2.3959 6 6 2.9720 3.4063 2.3827 7 1 3.4565 3.8325 1.5167 8 6 2.6944 4.1982 3.4767 9 7 3.0192 5.4726 3.4655 10 14 1.8570 3.4611 4.9749 11 1 2.8861 2.9517 5.9167 12 1 1.0416 4.5030 5.6490 13 1 0.9778 2.3422 4.5502 14 6 4.2241 0.7844 0.9989 15 8 4.9653 0.7254 1.9571 16 6 4.6738 0.2482 -0.3357 17 1 3.8138 -0.0767 -0.9213 18 6 5.4695 1.3243 -1.1045 19 6 6.5255 0.4838 -1.8532 20 6 6.7075 -0.7629 -1.0138 21 6 7.7247 -1.7035 -1.0144 22 6 7.6808 -2.7768 -0.1480 23 6 6.6108 -2.9181 0.7238 24 8 6.5602 -3.9765 1.5746 25 6 7.6433 -4.9070 1.5177 26 6 5.5962 -1.9738 0.7282 27 6 5.6432 -0.8981 -0.1416 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3589 2.1314 0.0943 32 1 2.6177 1.4048 -0.9333 33 1 1.5227 1.8465 2.5259 34 1 3.1131 1.4479 3.2187 35 1 2.8237 6.0298 4.2349 36 1 5.9464 2.0204 -0.4146 37 1 4.8284 1.8562 -1.8075 38 1 7.4647 1.0324 -1.9241 39 1 6.1659 0.2208 -2.8480 40 1 8.5553 -1.5967 -1.6964 41 1 8.4761 -3.5077 -0.1513 42 1 7.7004 -5.3373 0.5180 43 1 8.5767 -4.3923 1.7458 44 1 7.4786 -5.7011 2.2460 45 1 4.7645 -2.0800 1.4089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292229113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:36 Heat of formation + Delta-G solvation = -41.761740 kcal Electronic energy + Delta-G solvation = -26510.214247 eV Core-core repulsion = 22878.795080 eV Total energy + Delta-G solvation = -3631.419167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89089 -40.64085 -39.17718 -37.26076 -35.80257 -35.04223 -33.77439 -32.52858 -30.76648 -29.51612 -29.03975 -27.46081 -26.89127 -24.63976 -23.79916 -22.33200 -21.77297 -21.04817 -19.90177 -19.09280 -18.65997 -18.19782 -17.43621 -17.05411 -16.64311 -16.50250 -16.21150 -15.98517 -15.74634 -15.51115 -15.11016 -14.63012 -14.39919 -14.25014 -14.09708 -13.96115 -13.62706 -13.57123 -13.29196 -13.00059 -12.90315 -12.72195 -12.65514 -12.55008 -12.34348 -12.26147 -12.19490 -11.97631 -11.75205 -11.62641 -11.48532 -10.85269 -10.64799 -10.35267 -9.79699 -9.46342 -8.97513 -8.35942 -6.40309 0.31330 0.44785 1.27245 1.31392 1.33373 1.41738 1.72664 2.28337 2.30241 2.37615 2.76049 2.98286 3.37376 3.55484 3.73510 3.91519 3.99051 4.05575 4.15494 4.22666 4.25396 4.31828 4.35309 4.39295 4.41982 4.50641 4.61232 4.70377 4.75863 4.79101 4.82827 4.91541 4.93263 4.98880 5.04681 5.13356 5.21830 5.31465 5.37852 5.43784 5.52431 5.66708 5.70216 5.79063 5.88925 6.22782 6.46336 6.60553 6.65161 7.19779 7.38561 8.80644 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.003927 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.178144 B = 7128.118802 C = 7367.503501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.130 3.870 4 N -0.595 5.595 5 C 0.227 3.773 6 C -0.534 4.534 7 H 0.035 0.965 8 C 0.016 3.984 9 N -0.941 5.941 10 Si 0.941 3.059 11 H -0.280 1.280 12 H -0.271 1.271 13 H -0.242 1.242 14 C 0.510 3.490 15 O -0.588 6.588 16 C -0.065 4.065 17 H 0.132 0.868 18 C -0.108 4.108 19 C -0.063 4.063 20 C -0.137 4.137 21 C -0.068 4.068 22 C -0.202 4.202 23 C 0.111 3.889 24 O -0.344 6.344 25 C 0.019 3.981 26 C -0.150 4.150 27 C -0.054 4.054 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.012 0.988 35 H 0.269 0.731 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -19.509 -14.769 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.009 3.991 4 N -0.325 5.325 5 C 0.105 3.895 6 C -0.573 4.573 7 H 0.053 0.947 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.764 3.236 11 H -0.205 1.205 12 H -0.196 1.196 13 H -0.166 1.166 14 C 0.299 3.701 15 O -0.469 6.469 16 C -0.086 4.086 17 H 0.150 0.850 18 C -0.146 4.146 19 C -0.099 4.099 20 C -0.137 4.137 21 C -0.086 4.086 22 C -0.220 4.220 23 C 0.066 3.934 24 O -0.258 6.258 25 C -0.075 4.075 26 C -0.169 4.169 27 C -0.054 4.054 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.691 -19.412 -14.020 24.401 hybrid contribution -0.191 0.280 1.444 1.483 sum 4.500 -19.132 -12.576 23.333 Atomic orbital electron populations 1.24078 0.95284 1.03111 0.97629 1.23314 0.96938 0.97943 1.02510 1.20890 0.92505 0.96565 0.89189 1.47995 1.13980 1.56004 1.14490 1.19276 0.95541 0.91446 0.83285 1.21535 1.39456 0.93864 1.02409 0.94656 1.25747 0.96032 0.95002 1.01441 1.70025 1.49021 1.06995 1.32092 0.85817 0.79289 0.79258 0.79242 1.20541 1.19567 1.16553 1.21057 0.81014 0.77306 0.90759 1.90636 1.54689 1.58980 1.42562 1.21028 0.99476 0.94667 0.93425 0.85030 1.22319 0.97830 0.95933 0.98470 1.20996 0.99486 0.91109 0.98356 1.20829 0.94941 0.98769 0.99153 1.20737 0.97791 0.92020 0.98021 1.21420 0.99237 1.02180 0.99180 1.18883 0.94975 0.88178 0.91373 1.86039 1.48093 1.34378 1.57299 1.23358 0.88441 0.91431 1.04290 1.19765 1.00039 0.95403 1.01715 1.19928 0.96479 0.93405 0.95634 0.87824 0.86483 0.87242 0.89807 0.87821 0.93668 0.96988 0.92217 0.93533 0.87048 0.89158 0.86821 0.82336 0.82273 0.90881 0.91867 0.86607 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.19 -4.84 9.33 25.65 0.24 -4.60 16 3 C 0.13 4.04 5.47 85.64 0.47 4.51 16 4 N -0.60 -25.28 2.45 -830.49 -2.03 -27.31 16 5 C 0.23 11.57 4.25 85.63 0.36 11.93 16 6 C -0.53 -31.95 9.94 25.60 0.25 -31.69 16 7 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 8 C 0.02 0.97 5.47 84.65 0.46 1.44 16 9 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16 10 Si 0.94 45.79 27.47 68.60 1.88 47.67 16 11 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16 14 C 0.51 22.10 6.48 87.66 0.57 22.67 16 15 O -0.59 -31.80 15.65 -3.03 -0.05 -31.85 16 16 C -0.07 -2.04 2.40 -11.62 -0.03 -2.07 16 17 H 0.13 3.30 5.92 -2.39 -0.01 3.29 16 18 C -0.11 -2.90 6.54 31.50 0.21 -2.70 16 19 C -0.06 -1.28 6.77 30.52 0.21 -1.07 16 20 C -0.14 -3.51 6.14 -19.57 -0.12 -3.63 16 21 C -0.07 -1.45 10.03 22.29 0.22 -1.23 16 22 C -0.20 -4.52 9.04 22.34 0.20 -4.32 16 23 C 0.11 3.25 6.68 22.48 0.15 3.40 16 24 O -0.34 -9.42 10.50 -92.39 -0.97 -10.39 16 25 C 0.02 0.29 9.81 113.37 1.11 1.40 16 26 C -0.15 -5.20 9.38 22.40 0.21 -4.98 16 27 C -0.05 -1.73 5.20 -19.60 -0.10 -1.83 16 28 H 0.10 2.20 7.84 -2.91 -0.02 2.18 16 29 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16 30 H 0.11 2.74 7.94 -2.91 -0.02 2.72 16 31 H 0.08 2.71 7.69 -2.39 -0.02 2.69 16 32 H 0.10 2.60 6.50 -2.39 -0.02 2.58 16 33 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16 34 H 0.01 0.67 6.79 -2.39 -0.02 0.66 16 35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.05 1.60 7.91 -2.39 -0.02 1.58 16 37 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.16 2.40 6.31 -2.91 -0.02 2.38 16 42 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 43 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 44 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -83.32 370.49 5.44 -77.88 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.92 Total: 18.98 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.39 Total: -15.37 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.73 Total: -86.93 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.02 Total: -42.23 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.67 kcal Total: -83.32 5.44 -77.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292229113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.117 kcal (2) G-P(sol) polarization free energy of solvation -83.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds