Wall clock time and date at job start Tue Mar 31 2020 11:10:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50708 * 120.00075 * 2 1
4 4 N 1.46500 * 109.46858 * 125.25943 * 3 2 1
5 5 C 1.46505 * 119.99947 * 265.64237 * 4 3 2
6 6 C 1.50700 * 109.46868 * 270.00315 * 5 4 3
7 7 H 1.07997 * 120.00443 * 359.97438 * 6 5 4
8 8 C 1.37878 * 119.99881 * 180.02562 * 6 5 4
9 9 N 1.31517 * 120.00248 * 179.97438 * 8 6 5
10 10 Si 1.86797 * 120.00174 * 359.97438 * 8 6 5
11 11 H 1.48502 * 109.47083 * 89.99961 * 10 8 6
12 12 H 1.48492 * 109.47444 * 210.00212 * 10 8 6
13 13 H 1.48503 * 109.47017 * 330.00598 * 10 8 6
14 14 C 1.34773 * 120.00165 * 85.64452 * 4 3 2
15 15 O 1.21279 * 120.00194 * 184.84736 * 14 4 3
16 16 C 1.50701 * 119.99837 * 4.84475 * 14 4 3
17 17 H 1.09000 * 110.26897 * 332.24366 * 16 14 4
18 18 C 1.54335 * 110.30268 * 94.32142 * 16 14 4
19 19 C 1.54339 * 102.39851 * 145.29204 * 18 16 14
20 20 C 1.51388 * 105.17277 * 333.63020 * 19 18 16
21 21 C 1.38549 * 130.32043 * 197.20210 * 20 19 18
22 22 C 1.38008 * 120.28954 * 180.02562 * 21 20 19
23 23 C 1.38745 * 119.87881 * 0.27060 * 22 21 20
24 24 O 1.35897 * 120.09232 * 179.70869 * 23 22 21
25 25 C 1.42900 * 117.00053 * 359.97438 * 24 23 22
26 26 C 1.38600 * 119.81470 * 359.44819 * 23 22 21
27 27 C 1.38263 * 109.74267 * 17.19767 * 20 19 18
28 28 H 1.07998 * 120.00034 * 0.02562 * 1 2 3
29 29 H 1.07994 * 119.99841 * 179.97438 * 1 2 3
30 30 H 1.08000 * 120.00482 * 180.02562 * 2 1 3
31 31 H 1.09002 * 109.46615 * 5.26506 * 3 2 1
32 32 H 1.08996 * 109.47240 * 245.25744 * 3 2 1
33 33 H 1.09001 * 109.47145 * 29.99692 * 5 4 3
34 34 H 1.08995 * 109.46870 * 150.00113 * 5 4 3
35 35 H 0.96992 * 120.00594 * 179.97438 * 9 8 6
36 36 H 1.09001 * 110.82567 * 27.06311 * 18 16 14
37 37 H 1.09001 * 110.99455 * 263.59417 * 18 16 14
38 38 H 1.08998 * 110.30805 * 214.70320 * 19 18 16
39 39 H 1.09002 * 110.38696 * 92.59683 * 19 18 16
40 40 H 1.08001 * 119.85785 * 359.97438 * 21 20 19
41 41 H 1.08007 * 120.06209 * 180.02562 * 22 21 20
42 42 H 1.08996 * 109.47038 * 300.00276 * 25 24 23
43 43 H 1.09000 * 109.47027 * 60.00756 * 25 24 23
44 44 H 1.09002 * 109.46971 * 180.02562 * 25 24 23
45 45 H 1.07999 * 119.91619 * 180.25352 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9982 1.3293 1.1278
5 6 2.6003 1.9459 2.3959
6 6 2.9720 3.4063 2.3827
7 1 3.4565 3.8325 1.5167
8 6 2.6944 4.1982 3.4767
9 7 3.0192 5.4726 3.4655
10 14 1.8570 3.4611 4.9749
11 1 2.8861 2.9517 5.9167
12 1 1.0416 4.5030 5.6490
13 1 0.9778 2.3422 4.5502
14 6 4.2241 0.7844 0.9989
15 8 4.9653 0.7254 1.9571
16 6 4.6738 0.2482 -0.3357
17 1 3.8138 -0.0767 -0.9213
18 6 5.4695 1.3243 -1.1045
19 6 6.5255 0.4838 -1.8532
20 6 6.7075 -0.7629 -1.0138
21 6 7.7247 -1.7035 -1.0144
22 6 7.6808 -2.7768 -0.1480
23 6 6.6108 -2.9181 0.7238
24 8 6.5602 -3.9765 1.5746
25 6 7.6433 -4.9070 1.5177
26 6 5.5962 -1.9738 0.7282
27 6 5.6432 -0.8981 -0.1416
28 1 -0.5400 0.9353 -0.0004
29 1 -0.5399 -0.9353 -0.0004
30 1 1.8501 -0.9353 -0.0004
31 1 1.3589 2.1314 0.0943
32 1 2.6177 1.4048 -0.9333
33 1 1.5227 1.8465 2.5259
34 1 3.1131 1.4479 3.2187
35 1 2.8237 6.0298 4.2349
36 1 5.9464 2.0204 -0.4146
37 1 4.8284 1.8562 -1.8075
38 1 7.4647 1.0324 -1.9241
39 1 6.1659 0.2208 -2.8480
40 1 8.5553 -1.5967 -1.6964
41 1 8.4761 -3.5077 -0.1513
42 1 7.7004 -5.3373 0.5180
43 1 8.5767 -4.3923 1.7458
44 1 7.4786 -5.7011 2.2460
45 1 4.7645 -2.0800 1.4089
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000292229113.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:36
Heat of formation + Delta-G solvation = -41.761740 kcal
Electronic energy + Delta-G solvation = -26510.214247 eV
Core-core repulsion = 22878.795080 eV
Total energy + Delta-G solvation = -3631.419167 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.89089 -40.64085 -39.17718 -37.26076 -35.80257 -35.04223 -33.77439 -32.52858
-30.76648 -29.51612 -29.03975 -27.46081 -26.89127 -24.63976 -23.79916 -22.33200
-21.77297 -21.04817 -19.90177 -19.09280 -18.65997 -18.19782 -17.43621 -17.05411
-16.64311 -16.50250 -16.21150 -15.98517 -15.74634 -15.51115 -15.11016 -14.63012
-14.39919 -14.25014 -14.09708 -13.96115 -13.62706 -13.57123 -13.29196 -13.00059
-12.90315 -12.72195 -12.65514 -12.55008 -12.34348 -12.26147 -12.19490 -11.97631
-11.75205 -11.62641 -11.48532 -10.85269 -10.64799 -10.35267 -9.79699 -9.46342
-8.97513 -8.35942 -6.40309 0.31330 0.44785 1.27245 1.31392 1.33373
1.41738 1.72664 2.28337 2.30241 2.37615 2.76049 2.98286 3.37376
3.55484 3.73510 3.91519 3.99051 4.05575 4.15494 4.22666 4.25396
4.31828 4.35309 4.39295 4.41982 4.50641 4.61232 4.70377 4.75863
4.79101 4.82827 4.91541 4.93263 4.98880 5.04681 5.13356 5.21830
5.31465 5.37852 5.43784 5.52431 5.66708 5.70216 5.79063 5.88925
6.22782 6.46336 6.60553 6.65161 7.19779 7.38561 8.80644
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.013154 B = 0.003927 C = 0.003800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2128.178144 B = 7128.118802 C = 7367.503501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.188 4.188
3 C 0.130 3.870
4 N -0.595 5.595
5 C 0.227 3.773
6 C -0.534 4.534
7 H 0.035 0.965
8 C 0.016 3.984
9 N -0.941 5.941
10 Si 0.941 3.059
11 H -0.280 1.280
12 H -0.271 1.271
13 H -0.242 1.242
14 C 0.510 3.490
15 O -0.588 6.588
16 C -0.065 4.065
17 H 0.132 0.868
18 C -0.108 4.108
19 C -0.063 4.063
20 C -0.137 4.137
21 C -0.068 4.068
22 C -0.202 4.202
23 C 0.111 3.889
24 O -0.344 6.344
25 C 0.019 3.981
26 C -0.150 4.150
27 C -0.054 4.054
28 H 0.104 0.896
29 H 0.117 0.883
30 H 0.110 0.890
31 H 0.084 0.916
32 H 0.104 0.896
33 H 0.045 0.955
34 H 0.012 0.988
35 H 0.269 0.731
36 H 0.046 0.954
37 H 0.111 0.889
38 H 0.090 0.910
39 H 0.114 0.886
40 H 0.159 0.841
41 H 0.160 0.840
42 H 0.073 0.927
43 H 0.063 0.937
44 H 0.116 0.884
45 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.479 -19.509 -14.769 24.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.207 4.207
3 C 0.009 3.991
4 N -0.325 5.325
5 C 0.105 3.895
6 C -0.573 4.573
7 H 0.053 0.947
8 C -0.182 4.182
9 N -0.581 5.581
10 Si 0.764 3.236
11 H -0.205 1.205
12 H -0.196 1.196
13 H -0.166 1.166
14 C 0.299 3.701
15 O -0.469 6.469
16 C -0.086 4.086
17 H 0.150 0.850
18 C -0.146 4.146
19 C -0.099 4.099
20 C -0.137 4.137
21 C -0.086 4.086
22 C -0.220 4.220
23 C 0.066 3.934
24 O -0.258 6.258
25 C -0.075 4.075
26 C -0.169 4.169
27 C -0.054 4.054
28 H 0.122 0.878
29 H 0.135 0.865
30 H 0.128 0.872
31 H 0.102 0.898
32 H 0.122 0.878
33 H 0.063 0.937
34 H 0.030 0.970
35 H 0.078 0.922
36 H 0.065 0.935
37 H 0.130 0.870
38 H 0.108 0.892
39 H 0.132 0.868
40 H 0.177 0.823
41 H 0.177 0.823
42 H 0.091 0.909
43 H 0.081 0.919
44 H 0.134 0.866
45 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 4.691 -19.412 -14.020 24.401
hybrid contribution -0.191 0.280 1.444 1.483
sum 4.500 -19.132 -12.576 23.333
Atomic orbital electron populations
1.24078 0.95284 1.03111 0.97629 1.23314 0.96938 0.97943 1.02510
1.20890 0.92505 0.96565 0.89189 1.47995 1.13980 1.56004 1.14490
1.19276 0.95541 0.91446 0.83285 1.21535 1.39456 0.93864 1.02409
0.94656 1.25747 0.96032 0.95002 1.01441 1.70025 1.49021 1.06995
1.32092 0.85817 0.79289 0.79258 0.79242 1.20541 1.19567 1.16553
1.21057 0.81014 0.77306 0.90759 1.90636 1.54689 1.58980 1.42562
1.21028 0.99476 0.94667 0.93425 0.85030 1.22319 0.97830 0.95933
0.98470 1.20996 0.99486 0.91109 0.98356 1.20829 0.94941 0.98769
0.99153 1.20737 0.97791 0.92020 0.98021 1.21420 0.99237 1.02180
0.99180 1.18883 0.94975 0.88178 0.91373 1.86039 1.48093 1.34378
1.57299 1.23358 0.88441 0.91431 1.04290 1.19765 1.00039 0.95403
1.01715 1.19928 0.96479 0.93405 0.95634 0.87824 0.86483 0.87242
0.89807 0.87821 0.93668 0.96988 0.92217 0.93533 0.87048 0.89158
0.86821 0.82336 0.82273 0.90881 0.91867 0.86607 0.88398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.57 14.32 67.78 0.97 -2.60 16
2 C -0.19 -4.84 9.33 25.65 0.24 -4.60 16
3 C 0.13 4.04 5.47 85.64 0.47 4.51 16
4 N -0.60 -25.28 2.45 -830.49 -2.03 -27.31 16
5 C 0.23 11.57 4.25 85.63 0.36 11.93 16
6 C -0.53 -31.95 9.94 25.60 0.25 -31.69 16
7 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16
8 C 0.02 0.97 5.47 84.65 0.46 1.44 16
9 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16
10 Si 0.94 45.79 27.47 68.60 1.88 47.67 16
11 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16
12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
13 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16
14 C 0.51 22.10 6.48 87.66 0.57 22.67 16
15 O -0.59 -31.80 15.65 -3.03 -0.05 -31.85 16
16 C -0.07 -2.04 2.40 -11.62 -0.03 -2.07 16
17 H 0.13 3.30 5.92 -2.39 -0.01 3.29 16
18 C -0.11 -2.90 6.54 31.50 0.21 -2.70 16
19 C -0.06 -1.28 6.77 30.52 0.21 -1.07 16
20 C -0.14 -3.51 6.14 -19.57 -0.12 -3.63 16
21 C -0.07 -1.45 10.03 22.29 0.22 -1.23 16
22 C -0.20 -4.52 9.04 22.34 0.20 -4.32 16
23 C 0.11 3.25 6.68 22.48 0.15 3.40 16
24 O -0.34 -9.42 10.50 -92.39 -0.97 -10.39 16
25 C 0.02 0.29 9.81 113.37 1.11 1.40 16
26 C -0.15 -5.20 9.38 22.40 0.21 -4.98 16
27 C -0.05 -1.73 5.20 -19.60 -0.10 -1.83 16
28 H 0.10 2.20 7.84 -2.91 -0.02 2.18 16
29 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16
30 H 0.11 2.74 7.94 -2.91 -0.02 2.72 16
31 H 0.08 2.71 7.69 -2.39 -0.02 2.69 16
32 H 0.10 2.60 6.50 -2.39 -0.02 2.58 16
33 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16
34 H 0.01 0.67 6.79 -2.39 -0.02 0.66 16
35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16
36 H 0.05 1.60 7.91 -2.39 -0.02 1.58 16
37 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16
38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
40 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16
41 H 0.16 2.40 6.31 -2.91 -0.02 2.38 16
42 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16
43 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16
44 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16
45 H 0.10 3.75 8.06 -2.91 -0.02 3.73 16
Total: -1.00 -83.32 370.49 5.44 -77.88
By element:
Atomic # 1 Polarization: 18.06 SS G_CDS: 0.92 Total: 18.98 kcal
Atomic # 6 Polarization: -20.76 SS G_CDS: 5.39 Total: -15.37 kcal
Atomic # 7 Polarization: -85.19 SS G_CDS: -1.73 Total: -86.93 kcal
Atomic # 8 Polarization: -41.21 SS G_CDS: -1.02 Total: -42.23 kcal
Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.67 kcal
Total: -83.32 5.44 -77.88 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292229113.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.117 kcal
(2) G-P(sol) polarization free energy of solvation -83.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds