Wall clock time and date at job start Tue Mar 31 2020 11:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 117.00124 * 2 1 4 4 C 1.38760 * 120.16395 * 0.02562 * 3 2 1 5 5 C 1.37901 * 119.86659 * 180.23268 * 4 3 2 6 6 C 1.38798 * 120.48314 * 0.02562 * 5 4 3 7 7 C 1.37964 * 119.65927 * 359.59971 * 6 5 4 8 8 C 1.38483 * 120.06083 * 0.56024 * 7 6 5 9 9 C 1.50804 * 121.27432 * 180.57733 * 7 6 5 10 10 C 1.52863 * 117.69006 * 130.36938 * 9 7 6 11 11 C 1.52818 * 117.77310 * 199.25820 * 9 7 6 12 12 C 1.53276 * 115.10872 * 344.96468 * 9 7 6 13 13 N 1.47392 * 106.98860 * 41.16843 * 12 9 7 14 14 C 1.34779 * 120.97331 * 119.47265 * 13 12 9 15 15 O 1.21279 * 120.00172 * 0.02801 * 14 13 12 16 16 C 1.50698 * 119.99745 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47018 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46940 * 180.02562 * 17 16 14 19 19 H 1.07990 * 119.99971 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99928 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47175 * 60.00278 * 22 20 18 24 24 H 1.48502 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47243 * 299.99969 * 22 20 18 26 26 C 1.46499 * 118.05163 * 299.49695 * 13 12 9 27 27 H 1.09004 * 109.46726 * 299.99576 * 1 2 3 28 28 H 1.08996 * 109.47602 * 59.99603 * 1 2 3 29 29 H 1.09004 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.06787 * 0.20575 * 4 3 2 31 31 H 1.07995 * 119.75461 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.87087 * 179.64356 * 8 7 6 33 33 H 1.08998 * 117.50617 * 0.29608 * 10 9 7 34 34 H 1.09004 * 117.50200 * 215.24033 * 10 9 7 35 35 H 1.09001 * 117.50283 * 144.88614 * 11 9 7 36 36 H 1.08994 * 117.50354 * 359.84370 * 11 9 7 37 37 H 1.09005 * 109.95404 * 160.54067 * 12 9 7 38 38 H 1.09000 * 109.95251 * 281.80016 * 12 9 7 39 39 H 1.08995 * 109.47375 * 300.00602 * 16 14 13 40 40 H 1.09000 * 109.47022 * 60.00630 * 16 14 13 41 41 H 1.09004 * 109.46714 * 300.00188 * 17 16 14 42 42 H 1.08996 * 109.47490 * 60.00307 * 17 16 14 43 43 H 0.97005 * 119.99818 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.25047 * 287.00754 * 26 13 12 45 45 H 1.09002 * 109.24545 * 167.58443 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2937 2.3768 0.0005 5 6 1.9261 3.6022 -0.0043 6 6 3.3119 3.6793 -0.0103 7 6 4.0602 2.5203 -0.0030 8 6 3.4295 1.2874 -0.0015 9 6 5.5677 2.5616 0.0039 10 6 6.2970 1.7081 1.0414 11 6 6.3166 1.3037 -0.4345 12 6 6.1828 3.9182 -0.3578 13 7 5.3729 4.9509 0.3132 14 6 5.9236 5.7855 1.2169 15 8 7.1021 5.6935 1.4882 16 6 5.0749 6.8330 1.8902 17 6 5.9374 7.6406 2.8624 18 6 5.0885 8.6878 3.5362 19 1 4.0391 8.7694 3.2949 20 6 5.6519 9.5415 4.4608 21 7 6.9298 9.4417 4.7550 22 14 4.5999 10.8399 5.2954 23 1 3.4981 10.1801 6.0410 24 1 5.4366 11.6229 6.2400 25 1 4.0285 11.7487 4.2693 26 6 3.9518 5.0431 -0.0305 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2149 2.3247 0.0043 31 1 1.3388 4.5085 -0.0035 32 1 4.0183 0.3820 -0.0016 33 1 5.6880 1.1100 1.7192 34 1 7.2176 2.1090 1.4657 35 1 7.2500 1.4384 -0.9809 36 1 5.7205 0.4395 -0.7274 37 1 7.2129 3.9656 -0.0046 38 1 6.1517 4.0647 -1.4375 39 1 4.6554 7.5000 1.1371 40 1 4.2663 6.3487 2.4376 41 1 6.3572 6.9737 3.6156 42 1 6.7458 8.1249 2.3147 43 1 7.3262 10.0426 5.4052 44 1 3.8503 5.4730 -1.0269 45 1 3.4487 5.6869 0.6910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293122316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:43 Heat of formation + Delta-G solvation = -23.845171 kcal Electronic energy + Delta-G solvation = -26043.572595 eV Core-core repulsion = 22412.930349 eV Total energy + Delta-G solvation = -3630.642246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94497 -39.60537 -38.37575 -36.79425 -35.14361 -33.46942 -31.14391 -31.05319 -30.62328 -28.33566 -27.62637 -25.73771 -24.84601 -23.31642 -22.58642 -21.71641 -21.49891 -19.70267 -18.49168 -17.84489 -17.07330 -16.44789 -16.21372 -16.01660 -15.84243 -15.37028 -14.89046 -14.77210 -14.44610 -14.37088 -13.83487 -13.69929 -13.64492 -13.06276 -12.72210 -12.70486 -12.31178 -12.22289 -12.16203 -12.00931 -11.67633 -11.55235 -11.18296 -11.11320 -11.06640 -10.90300 -10.61273 -10.50405 -10.35717 -9.94067 -9.61536 -9.17802 -9.00639 -8.83420 -8.48615 -8.30078 -8.17506 -5.94593 -3.98994 1.09574 1.21010 2.98059 3.14154 3.25358 3.35191 3.37118 3.39989 3.41688 3.92429 4.34395 4.47501 4.49916 4.57859 4.67736 4.72870 4.81992 4.82607 4.88457 5.01481 5.13197 5.17730 5.23444 5.34445 5.39274 5.40253 5.49517 5.59968 5.67784 5.70111 5.79965 5.82869 5.93758 6.01720 6.09557 6.16597 6.21441 6.23459 6.42673 6.55725 6.67605 6.91122 7.14742 7.74931 7.76032 7.88006 8.08728 8.39723 8.73506 9.09146 9.64299 11.16367 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.003175 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.649958 B = 8817.732213 C =10065.977289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.209 4.209 5 C -0.070 4.070 6 C -0.125 4.125 7 C 0.012 3.988 8 C -0.154 4.154 9 C -0.110 4.110 10 C -0.155 4.155 11 C -0.163 4.163 12 C 0.150 3.850 13 N -0.622 5.622 14 C 0.518 3.482 15 O -0.531 6.531 16 C -0.129 4.129 17 C 0.038 3.962 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.155 3.845 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 -19.226 -14.046 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.227 4.227 5 C -0.089 4.089 6 C -0.126 4.126 7 C 0.012 3.988 8 C -0.173 4.173 9 C -0.111 4.111 10 C -0.192 4.192 11 C -0.200 4.200 12 C 0.027 3.973 13 N -0.357 5.357 14 C 0.309 3.691 15 O -0.406 6.406 16 C -0.169 4.169 17 C 0.000 4.000 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.031 3.969 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.968 -19.342 -13.755 26.145 hybrid contribution -1.067 0.733 0.482 1.381 sum -12.035 -18.609 -13.272 25.832 Atomic orbital electron populations 1.23046 0.78404 1.03843 1.01423 1.86055 1.21362 1.27005 1.88868 1.18875 0.92132 0.84142 0.96743 1.21124 0.99953 0.92219 1.09430 1.20812 0.93346 0.97479 0.97262 1.19819 0.93429 0.94989 1.04366 1.18428 0.92546 0.91489 0.96381 1.20241 0.91316 0.98065 1.07635 1.20563 0.90231 0.93649 1.06666 1.23155 1.02282 1.01815 0.91918 1.23107 1.01955 0.96883 0.98097 1.21161 0.96183 0.83299 0.96668 1.48171 1.09174 1.34956 1.43423 1.21548 0.88834 0.81444 0.77321 1.90654 1.16934 1.71038 1.61988 1.21899 0.99569 0.95463 0.99957 1.18899 0.94292 0.93822 0.92949 1.21178 0.95662 1.16350 1.23368 0.92675 1.25020 0.94932 0.97588 0.96809 1.69988 1.11116 1.38200 1.33525 0.86657 0.80239 0.81693 0.79370 1.20261 1.21294 1.20240 1.20300 0.81217 0.93490 1.01876 0.92583 0.92654 0.88334 0.85394 0.85196 0.85209 0.88537 0.87783 0.88019 0.88228 0.88230 0.90966 0.90207 0.90237 0.95845 0.95808 0.92897 0.90553 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.82 101.05 0.99 1.17 16 2 O -0.32 -3.27 10.50 -19.43 -0.20 -3.47 16 3 C 0.13 1.40 6.68 -39.27 -0.26 1.14 16 4 C -0.21 -2.07 9.04 -39.51 -0.36 -2.43 16 5 C -0.07 -0.73 9.64 -39.50 -0.38 -1.11 16 6 C -0.12 -1.51 5.84 -104.54 -0.61 -2.12 16 7 C 0.01 0.15 5.62 -104.58 -0.59 -0.44 16 8 C -0.15 -1.79 8.90 -39.37 -0.35 -2.14 16 9 C -0.11 -1.33 2.42 -155.63 -0.38 -1.71 16 10 C -0.15 -1.80 9.65 -26.78 -0.26 -2.05 16 11 C -0.16 -1.56 9.53 -26.81 -0.26 -1.81 16 12 C 0.15 2.03 6.22 -3.41 -0.02 2.01 16 13 N -0.62 -9.63 2.94 -174.20 -0.51 -10.14 16 14 C 0.52 10.32 7.71 -10.99 -0.08 10.23 16 15 O -0.53 -12.64 15.44 5.56 0.09 -12.56 16 16 C -0.13 -2.67 4.02 -27.88 -0.11 -2.78 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.15 1.92 6.05 -5.21 -0.03 1.88 16 27 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 0.96 6.32 -52.49 -0.33 0.63 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.13 1.37 6.22 -52.49 -0.33 1.04 16 33 H 0.10 1.09 8.06 -51.93 -0.42 0.67 16 34 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.85 6.45 -51.93 -0.33 0.51 16 37 H 0.10 1.49 6.90 -51.93 -0.36 1.13 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 40 H 0.08 1.53 7.60 -51.93 -0.39 1.13 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.22 6.04 -51.93 -0.31 0.91 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -34.89 364.95 -9.25 -44.14 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.61 Total: -0.36 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -3.23 Total: -12.97 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.22 Total: -36.97 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.12 Total: -16.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.89 -9.25 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293122316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.293 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds