Wall clock time and date at job start Tue Mar 31 2020 11:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 117.00124 * 2 1 4 4 C 1.38760 * 120.16395 * 0.02562 * 3 2 1 5 5 C 1.37901 * 119.86659 * 180.23268 * 4 3 2 6 6 C 1.38798 * 120.48314 * 0.02562 * 5 4 3 7 7 C 1.37964 * 119.65927 * 359.59971 * 6 5 4 8 8 C 1.38483 * 120.06083 * 0.56024 * 7 6 5 9 9 C 1.50804 * 121.27432 * 180.57733 * 7 6 5 10 10 C 1.52863 * 117.69006 * 130.36938 * 9 7 6 11 11 C 1.52818 * 117.77310 * 199.25820 * 9 7 6 12 12 C 1.53276 * 115.10872 * 344.96468 * 9 7 6 13 13 N 1.47392 * 106.98860 * 41.16843 * 12 9 7 14 14 C 1.34779 * 120.97331 * 119.47265 * 13 12 9 15 15 O 1.21279 * 120.00172 * 0.02801 * 14 13 12 16 16 C 1.50698 * 119.99745 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47018 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46940 * 180.02562 * 17 16 14 19 19 H 1.07990 * 119.99971 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99928 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47175 * 60.00278 * 22 20 18 24 24 H 1.48502 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47243 * 299.99969 * 22 20 18 26 26 C 1.46499 * 118.05163 * 299.49695 * 13 12 9 27 27 H 1.09004 * 109.46726 * 299.99576 * 1 2 3 28 28 H 1.08996 * 109.47602 * 59.99603 * 1 2 3 29 29 H 1.09004 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.06787 * 0.20575 * 4 3 2 31 31 H 1.07995 * 119.75461 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.87087 * 179.64356 * 8 7 6 33 33 H 1.08998 * 117.50617 * 0.29608 * 10 9 7 34 34 H 1.09004 * 117.50200 * 215.24033 * 10 9 7 35 35 H 1.09001 * 117.50283 * 144.88614 * 11 9 7 36 36 H 1.08994 * 117.50354 * 359.84370 * 11 9 7 37 37 H 1.09005 * 109.95404 * 160.54067 * 12 9 7 38 38 H 1.09000 * 109.95251 * 281.80016 * 12 9 7 39 39 H 1.08995 * 109.47375 * 300.00602 * 16 14 13 40 40 H 1.09000 * 109.47022 * 60.00630 * 16 14 13 41 41 H 1.09004 * 109.46714 * 300.00188 * 17 16 14 42 42 H 1.08996 * 109.47490 * 60.00307 * 17 16 14 43 43 H 0.97005 * 119.99818 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.25047 * 287.00754 * 26 13 12 45 45 H 1.09002 * 109.24545 * 167.58443 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2937 2.3768 0.0005 5 6 1.9261 3.6022 -0.0043 6 6 3.3119 3.6793 -0.0103 7 6 4.0602 2.5203 -0.0030 8 6 3.4295 1.2874 -0.0015 9 6 5.5677 2.5616 0.0039 10 6 6.2970 1.7081 1.0414 11 6 6.3166 1.3037 -0.4345 12 6 6.1828 3.9182 -0.3578 13 7 5.3729 4.9509 0.3132 14 6 5.9236 5.7855 1.2169 15 8 7.1021 5.6935 1.4882 16 6 5.0749 6.8330 1.8902 17 6 5.9374 7.6406 2.8624 18 6 5.0885 8.6878 3.5362 19 1 4.0391 8.7694 3.2949 20 6 5.6519 9.5415 4.4608 21 7 6.9298 9.4417 4.7550 22 14 4.5999 10.8399 5.2954 23 1 3.4981 10.1801 6.0410 24 1 5.4366 11.6229 6.2400 25 1 4.0285 11.7487 4.2693 26 6 3.9518 5.0431 -0.0305 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2149 2.3247 0.0043 31 1 1.3388 4.5085 -0.0035 32 1 4.0183 0.3820 -0.0016 33 1 5.6880 1.1100 1.7192 34 1 7.2176 2.1090 1.4657 35 1 7.2500 1.4384 -0.9809 36 1 5.7205 0.4395 -0.7274 37 1 7.2129 3.9656 -0.0046 38 1 6.1517 4.0647 -1.4375 39 1 4.6554 7.5000 1.1371 40 1 4.2663 6.3487 2.4376 41 1 6.3572 6.9737 3.6156 42 1 6.7458 8.1249 2.3147 43 1 7.3262 10.0426 5.4052 44 1 3.8503 5.4730 -1.0269 45 1 3.4487 5.6869 0.6910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293122316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:42 Heat of formation + Delta-G solvation = -44.648920 kcal Electronic energy + Delta-G solvation = -26044.474713 eV Core-core repulsion = 22412.930349 eV Total energy + Delta-G solvation = -3631.544364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89052 -40.69170 -39.51193 -37.62063 -36.39100 -35.58394 -33.04964 -31.96603 -31.49779 -29.50335 -28.45883 -27.27535 -26.13396 -24.19645 -23.54863 -23.34334 -22.52073 -20.80225 -19.69447 -18.87444 -18.67119 -17.70137 -17.38639 -17.18477 -16.63281 -16.53463 -16.44975 -15.95289 -15.82617 -15.45052 -14.94029 -14.70739 -14.52596 -14.30462 -14.13904 -14.09075 -13.52665 -13.36850 -13.31824 -13.07045 -12.85539 -12.77039 -12.51509 -12.49223 -12.43251 -11.96198 -11.91743 -11.89697 -11.60119 -11.39650 -11.31622 -11.20231 -10.69991 -10.55251 -9.76711 -9.62201 -8.99791 -8.16950 -6.31226 0.28802 0.39555 1.42649 1.47476 1.55056 1.64698 1.94566 2.35293 2.43954 2.53857 3.02972 3.15951 3.47511 3.57183 3.74808 3.77551 3.87873 3.95409 4.00580 4.22281 4.26674 4.37486 4.42160 4.42595 4.48728 4.51274 4.55066 4.61745 4.62780 4.72415 4.74676 4.76417 4.90221 4.95707 5.03601 5.07698 5.17150 5.27389 5.36887 5.46927 5.53937 5.58180 5.62530 5.76630 5.85307 6.17876 6.37539 6.45365 6.86736 7.21927 7.38978 8.95680 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.003175 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.649958 B = 8817.732213 C =10065.977289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.208 4.208 5 C -0.068 4.068 6 C -0.142 4.142 7 C -0.003 4.003 8 C -0.166 4.166 9 C -0.121 4.121 10 C -0.170 4.170 11 C -0.135 4.135 12 C 0.147 3.853 13 N -0.611 5.611 14 C 0.516 3.484 15 O -0.585 6.585 16 C -0.116 4.116 17 C 0.045 3.955 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.260 1.260 26 C 0.149 3.851 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.099 0.901 41 H -0.021 1.021 42 H -0.017 1.017 43 H 0.263 0.737 44 H 0.102 0.898 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.567 -19.543 -15.304 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.226 4.226 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.003 4.003 8 C -0.185 4.185 9 C -0.122 4.122 10 C -0.207 4.207 11 C -0.172 4.172 12 C 0.024 3.976 13 N -0.344 5.344 14 C 0.307 3.693 15 O -0.465 6.465 16 C -0.155 4.155 17 C 0.007 3.993 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.214 1.214 25 H -0.185 1.185 26 C 0.027 3.973 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.117 0.883 41 H -0.003 1.003 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.741 -19.699 -15.061 28.847 hybrid contribution 0.041 0.713 0.825 1.091 sum -14.700 -18.986 -14.236 27.914 Atomic orbital electron populations 1.23344 0.76366 1.05526 1.02349 1.86038 1.23522 1.26766 1.88688 1.19051 0.92201 0.84972 0.96367 1.21428 1.01272 0.91593 1.08330 1.21086 0.92714 0.98712 0.96141 1.19866 0.94351 0.94362 1.05750 1.18501 0.92367 0.92128 0.97288 1.20321 0.92004 0.97939 1.08190 1.20523 0.90702 0.93451 1.07504 1.23117 1.01756 1.02576 0.93244 1.23192 1.02032 0.95880 0.96083 1.21298 0.94973 0.83721 0.97565 1.48091 1.10846 1.33828 1.41592 1.21345 0.87976 0.82030 0.77999 1.90634 1.19033 1.72703 1.64131 1.21652 0.98739 0.95678 0.99480 1.18673 0.94152 0.93595 0.92875 1.21677 0.96723 1.16357 1.23320 0.90461 1.26151 0.96266 1.00382 0.97663 1.70179 1.13594 1.39593 1.34469 0.85369 0.78249 0.78327 0.78275 1.18701 1.21427 1.18489 1.20586 0.78927 0.94424 1.03356 0.91878 0.91385 0.86477 0.82861 0.82719 0.84841 0.88536 0.89452 0.86706 0.86650 0.90418 0.88629 0.87475 0.88268 1.00253 0.99862 0.92871 0.88007 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 113.37 1.11 1.29 16 2 O -0.34 -6.17 10.50 -92.45 -0.97 -7.14 16 3 C 0.12 2.40 6.68 22.47 0.15 2.55 16 4 C -0.21 -3.49 9.04 22.31 0.20 -3.28 16 5 C -0.07 -1.20 9.64 22.32 0.22 -0.98 16 6 C -0.14 -3.12 5.84 -19.81 -0.12 -3.24 16 7 C 0.00 -0.06 5.62 -19.84 -0.11 -0.17 16 8 C -0.17 -3.61 8.90 22.40 0.20 -3.41 16 9 C -0.12 -2.87 2.42 -52.91 -0.13 -3.00 16 10 C -0.17 -4.04 9.65 30.56 0.30 -3.74 16 11 C -0.13 -2.44 9.53 30.55 0.29 -2.15 16 12 C 0.15 3.97 6.22 86.30 0.54 4.50 16 13 N -0.61 -18.69 2.94 -823.42 -2.42 -21.11 16 14 C 0.52 21.13 7.71 87.66 0.68 21.80 16 15 O -0.59 -29.71 15.44 -3.03 -0.05 -29.76 16 16 C -0.12 -4.80 4.02 29.85 0.12 -4.68 16 17 C 0.04 2.53 4.26 29.85 0.13 2.66 16 18 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 19 H 0.08 3.99 7.74 -2.92 -0.02 3.96 16 20 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 21 N -0.94 -60.14 13.29 21.45 0.28 -59.86 16 22 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 26 C 0.15 3.37 6.05 85.62 0.52 3.88 16 27 H 0.06 0.52 7.66 -2.38 -0.02 0.50 16 28 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 29 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.15 1.70 6.32 -2.91 -0.02 1.68 16 31 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.13 2.66 6.22 -2.91 -0.02 2.64 16 33 H 0.10 2.25 8.06 -2.39 -0.02 2.23 16 34 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.12 1.75 6.45 -2.39 -0.02 1.73 16 37 H 0.08 2.45 6.90 -2.38 -0.02 2.43 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.11 3.83 8.05 -2.39 -0.02 3.81 16 40 H 0.10 3.70 7.60 -2.39 -0.02 3.68 16 41 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 42 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 43 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 2.28 6.04 -2.39 -0.01 2.26 16 Total: -1.00 -79.89 364.95 4.65 -75.24 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.99 Total: 15.02 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.78 Total: -18.80 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.13 Total: -80.97 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.02 Total: -36.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -79.89 4.65 -75.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293122316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.594 kcal (2) G-P(sol) polarization free energy of solvation -79.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds