Wall clock time and date at job start Tue Mar 31 2020 11:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99914 * 2 1 4 4 N 1.46494 * 109.47389 * 123.37044 * 3 2 1 5 5 C 1.46490 * 120.00029 * 274.26174 * 4 3 2 6 6 C 1.50704 * 109.47153 * 269.99768 * 5 4 3 7 7 H 1.07995 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99898 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00065 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46564 * 90.00199 * 10 8 6 12 12 H 1.48491 * 109.47152 * 210.00128 * 10 8 6 13 13 H 1.48502 * 109.47179 * 330.00787 * 10 8 6 14 14 C 1.34780 * 119.99681 * 94.26165 * 4 3 2 15 15 O 1.21290 * 119.99529 * 184.77808 * 14 4 3 16 16 C 1.50694 * 120.00083 * 4.77704 * 14 4 3 17 17 C 1.50703 * 115.55195 * 67.13799 * 16 14 4 18 18 C 1.38162 * 120.02807 * 237.86316 * 17 16 14 19 19 C 1.38248 * 120.05409 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11010 * 359.97438 * 19 18 17 21 21 C 1.38120 * 120.05829 * 0.02562 * 20 19 18 22 22 C 1.38714 * 120.02548 * 57.82305 * 17 16 14 23 23 O 1.35899 * 120.05574 * 0.03856 * 22 17 16 24 24 C 1.42902 * 116.99933 * 178.62656 * 23 22 17 25 25 C 1.53006 * 117.49670 * 212.80557 * 16 14 4 26 26 C 1.53008 * 117.49919 * 281.46465 * 16 14 4 27 27 H 1.07999 * 119.99825 * 185.10906 * 1 2 3 28 28 H 1.07993 * 120.00095 * 5.11501 * 1 2 3 29 29 H 1.08000 * 120.00372 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47106 * 3.36536 * 3 2 1 31 31 H 1.09007 * 109.47028 * 243.37431 * 3 2 1 32 32 H 1.09001 * 109.47436 * 30.00161 * 5 4 3 33 33 H 1.09003 * 109.47176 * 150.00405 * 5 4 3 34 34 H 0.97000 * 119.99664 * 179.97438 * 9 8 6 35 35 H 1.07999 * 119.97236 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.94000 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.97088 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.03066 * 179.72434 * 21 20 19 39 39 H 1.08995 * 109.47182 * 62.75441 * 24 23 22 40 40 H 1.08996 * 109.47296 * 182.75819 * 24 23 22 41 41 H 1.08999 * 109.46917 * 302.75692 * 24 23 22 42 42 H 1.09001 * 117.49699 * 214.99982 * 25 16 14 43 43 H 1.08999 * 117.49749 * 0.02780 * 25 16 14 44 44 H 1.08989 * 117.49711 * 359.97438 * 26 16 14 45 45 H 1.08998 * 117.49291 * 144.99694 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9656 1.3483 1.1534 5 6 2.4722 1.8125 2.4523 6 6 2.6696 3.3025 2.5613 7 1 3.1181 3.8490 1.7449 8 6 2.2775 3.9681 3.7034 9 7 1.7317 3.3026 4.6977 10 14 2.5228 5.8150 3.8388 11 1 1.3204 6.5135 3.3177 12 1 2.7314 6.1836 5.2620 13 1 3.7114 6.2161 3.0441 14 6 4.2496 0.9608 1.0195 15 8 4.9733 0.9138 1.9917 16 6 4.7859 0.5860 -0.3379 17 6 4.8836 1.7141 -1.3324 18 6 4.2184 1.6304 -2.5404 19 6 4.3072 2.6652 -3.4529 20 6 5.0612 3.7865 -3.1590 21 6 5.7281 3.8750 -1.9527 22 6 5.6408 2.8377 -1.0353 23 8 6.2960 2.9224 0.1523 24 6 7.0810 4.0950 0.3780 25 6 5.8589 -0.5032 -0.3975 26 6 4.4363 -0.8027 -0.8769 27 1 -0.5400 -0.9316 0.0833 28 1 -0.5400 0.9315 -0.0834 29 1 1.8501 -0.9353 0.0004 30 1 1.3568 2.1327 0.0603 31 1 2.6441 1.3895 -0.9187 32 1 1.4114 1.5789 2.5426 33 1 3.0232 1.3137 3.2497 34 1 1.4562 3.7709 5.5013 35 1 3.6285 0.7559 -2.7721 36 1 3.7868 2.5977 -4.3968 37 1 5.1287 4.5937 -3.8732 38 1 6.3205 4.7490 -1.7254 39 1 6.4325 4.9710 0.3824 40 1 7.5880 4.0134 1.3394 41 1 7.8213 4.1949 -0.4158 42 1 6.6353 -0.4038 -1.1560 43 1 6.1764 -0.9489 0.5451 44 1 3.8187 -1.4452 -0.2495 45 1 4.2768 -0.9001 -1.9508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293709620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:58 Heat of formation + Delta-G solvation = 11.992914 kcal Electronic energy + Delta-G solvation = -27715.192724 eV Core-core repulsion = 24086.104534 eV Total energy + Delta-G solvation = -3629.088190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56329 -38.96572 -37.28886 -36.06183 -35.40580 -33.06165 -31.93910 -30.73234 -29.99560 -27.71825 -27.04719 -25.49829 -24.41035 -22.93625 -22.51720 -21.53950 -20.87386 -19.77389 -18.31942 -17.69613 -16.63025 -16.39247 -15.83126 -15.62433 -15.38601 -15.25917 -14.60004 -14.41687 -14.36828 -14.11111 -13.91726 -13.44861 -13.15638 -12.67329 -12.58193 -12.29657 -12.02938 -11.90303 -11.59357 -11.44479 -11.35275 -11.20325 -10.95419 -10.90821 -10.88384 -10.83057 -10.58012 -10.33575 -10.20881 -10.04039 -9.56547 -9.08842 -8.93850 -8.54931 -8.37831 -7.92007 -7.53609 -5.98269 -4.01762 1.34571 1.54937 2.55050 3.31086 3.36626 3.39199 3.44897 3.56022 3.73896 3.98896 4.19531 4.48583 4.65364 4.90388 5.01958 5.03528 5.11886 5.19420 5.28309 5.35229 5.38764 5.40362 5.47157 5.50008 5.53292 5.67847 5.75194 5.76502 5.80214 5.93647 6.00761 6.10378 6.14420 6.29247 6.35448 6.44201 6.45922 6.56861 6.86134 6.90249 7.03698 7.21065 7.54254 7.63420 7.68378 7.99797 8.32145 8.56461 8.98642 9.25102 9.62575 11.09888 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.006376 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.586500 B = 4390.236923 C = 5467.010395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.131 3.869 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.553 3.447 15 O -0.529 6.529 16 C -0.101 4.101 17 C -0.074 4.074 18 C -0.078 4.078 19 C -0.162 4.162 20 C -0.082 4.082 21 C -0.211 4.211 22 C 0.149 3.851 23 O -0.289 6.289 24 C 0.029 3.971 25 C -0.136 4.136 26 C -0.164 4.164 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -3.696 -17.449 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.182 4.182 3 C 0.008 3.992 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.338 3.662 15 O -0.405 6.405 16 C -0.104 4.104 17 C -0.075 4.075 18 C -0.096 4.096 19 C -0.180 4.180 20 C -0.100 4.100 21 C -0.230 4.230 22 C 0.103 3.897 23 O -0.200 6.200 24 C -0.066 4.066 25 C -0.174 4.174 26 C -0.201 4.201 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.420 -3.800 -16.518 17.795 hybrid contribution 0.018 1.492 0.072 1.494 sum 5.438 -2.308 -16.446 17.475 Atomic orbital electron populations 1.23784 0.95867 1.01651 1.01146 1.23467 0.96257 0.99146 0.99367 1.20651 0.93649 0.94801 0.90142 1.48029 1.08532 1.63057 1.12084 1.19246 0.94679 0.94468 0.78729 1.21427 1.39939 0.92724 1.01646 0.92626 1.24912 0.95308 0.98357 0.95513 1.69937 1.41801 1.35701 1.06028 0.86555 0.78377 0.85581 0.77245 1.20712 1.21112 1.20047 1.18990 0.82044 0.77482 0.87654 1.90639 1.57105 1.53162 1.39593 1.19952 1.06336 0.89169 0.94969 1.18137 1.00619 0.93766 0.95015 1.20828 0.97600 0.99004 0.92125 1.20927 1.02291 0.94642 1.00145 1.20884 0.95714 0.97586 0.95794 1.21223 1.06230 0.99530 0.96006 1.18923 0.91985 0.93464 0.85363 1.86340 1.59864 1.41396 1.32411 1.23042 0.94117 0.87151 1.02278 1.22950 0.91709 0.99509 1.03206 1.23161 0.99364 0.96258 1.01354 0.88862 0.88493 0.87821 0.90274 0.89956 0.95080 0.93932 0.92841 0.85175 0.85953 0.86073 0.85529 0.92737 0.88170 0.93217 0.88500 0.87788 0.88238 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.31 29.01 0.42 -2.20 16 2 C -0.16 -2.51 9.64 -36.03 -0.35 -2.85 16 3 C 0.13 2.37 5.59 -5.20 -0.03 2.34 16 4 N -0.59 -13.23 2.44 -176.44 -0.43 -13.66 16 5 C 0.25 6.76 5.22 -5.20 -0.03 6.74 16 6 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.55 12.34 6.02 -10.99 -0.07 12.28 16 15 O -0.53 -14.07 16.27 5.55 0.09 -13.98 16 16 C -0.10 -1.71 0.77 -156.81 -0.12 -1.83 16 17 C -0.07 -1.18 4.30 -104.47 -0.45 -1.63 16 18 C -0.08 -0.99 7.59 -39.61 -0.30 -1.29 16 19 C -0.16 -1.86 10.04 -39.56 -0.40 -2.25 16 20 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 21 C -0.21 -2.95 9.04 -39.44 -0.36 -3.31 16 22 C 0.15 2.52 6.56 -39.22 -0.26 2.27 16 23 O -0.29 -5.45 9.22 -19.42 -0.18 -5.63 16 24 C 0.03 0.42 9.82 101.05 0.99 1.42 16 25 C -0.14 -2.00 9.77 -26.69 -0.26 -2.26 16 26 C -0.16 -2.14 8.76 -26.68 -0.23 -2.37 16 27 H 0.09 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.10 1.34 7.85 -52.49 -0.41 0.93 16 29 H 0.10 1.48 6.55 -52.49 -0.34 1.14 16 30 H 0.08 1.50 7.76 -51.93 -0.40 1.10 16 31 H 0.08 1.33 3.81 -51.93 -0.20 1.13 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.13 1.36 6.51 -52.49 -0.34 1.02 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 39 H 0.05 0.78 7.76 -51.93 -0.40 0.37 16 40 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.05 0.56 7.56 -51.93 -0.39 0.17 16 42 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.10 1.64 8.03 -51.93 -0.42 1.23 16 44 H 0.10 1.30 6.95 -51.94 -0.36 0.94 16 45 H 0.10 1.04 6.73 -51.93 -0.35 0.69 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -35.02 372.20 -7.86 -42.88 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.41 Total: 4.07 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.26 Total: -10.12 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.31 Total: -40.09 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.09 Total: -19.60 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.02 -7.86 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293709620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.874 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds