Wall clock time and date at job start Tue Mar 31 2020 11:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99914 * 2 1 4 4 N 1.46494 * 109.47389 * 123.37044 * 3 2 1 5 5 C 1.46490 * 120.00029 * 274.26174 * 4 3 2 6 6 C 1.50704 * 109.47153 * 269.99768 * 5 4 3 7 7 H 1.07995 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99898 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00065 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46564 * 90.00199 * 10 8 6 12 12 H 1.48491 * 109.47152 * 210.00128 * 10 8 6 13 13 H 1.48502 * 109.47179 * 330.00787 * 10 8 6 14 14 C 1.34780 * 119.99681 * 94.26165 * 4 3 2 15 15 O 1.21290 * 119.99529 * 184.77808 * 14 4 3 16 16 C 1.50694 * 120.00083 * 4.77704 * 14 4 3 17 17 C 1.50703 * 115.55195 * 67.13799 * 16 14 4 18 18 C 1.38162 * 120.02807 * 237.86316 * 17 16 14 19 19 C 1.38248 * 120.05409 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11010 * 359.97438 * 19 18 17 21 21 C 1.38120 * 120.05829 * 0.02562 * 20 19 18 22 22 C 1.38714 * 120.02548 * 57.82305 * 17 16 14 23 23 O 1.35899 * 120.05574 * 0.03856 * 22 17 16 24 24 C 1.42902 * 116.99933 * 178.62656 * 23 22 17 25 25 C 1.53006 * 117.49670 * 212.80557 * 16 14 4 26 26 C 1.53008 * 117.49919 * 281.46465 * 16 14 4 27 27 H 1.07999 * 119.99825 * 185.10906 * 1 2 3 28 28 H 1.07993 * 120.00095 * 5.11501 * 1 2 3 29 29 H 1.08000 * 120.00372 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47106 * 3.36536 * 3 2 1 31 31 H 1.09007 * 109.47028 * 243.37431 * 3 2 1 32 32 H 1.09001 * 109.47436 * 30.00161 * 5 4 3 33 33 H 1.09003 * 109.47176 * 150.00405 * 5 4 3 34 34 H 0.97000 * 119.99664 * 179.97438 * 9 8 6 35 35 H 1.07999 * 119.97236 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.94000 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.97088 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.03066 * 179.72434 * 21 20 19 39 39 H 1.08995 * 109.47182 * 62.75441 * 24 23 22 40 40 H 1.08996 * 109.47296 * 182.75819 * 24 23 22 41 41 H 1.08999 * 109.46917 * 302.75692 * 24 23 22 42 42 H 1.09001 * 117.49699 * 214.99982 * 25 16 14 43 43 H 1.08999 * 117.49749 * 0.02780 * 25 16 14 44 44 H 1.08989 * 117.49711 * 359.97438 * 26 16 14 45 45 H 1.08998 * 117.49291 * 144.99694 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9656 1.3483 1.1534 5 6 2.4722 1.8125 2.4523 6 6 2.6696 3.3025 2.5613 7 1 3.1181 3.8490 1.7449 8 6 2.2775 3.9681 3.7034 9 7 1.7317 3.3026 4.6977 10 14 2.5228 5.8150 3.8388 11 1 1.3204 6.5135 3.3177 12 1 2.7314 6.1836 5.2620 13 1 3.7114 6.2161 3.0441 14 6 4.2496 0.9608 1.0195 15 8 4.9733 0.9138 1.9917 16 6 4.7859 0.5860 -0.3379 17 6 4.8836 1.7141 -1.3324 18 6 4.2184 1.6304 -2.5404 19 6 4.3072 2.6652 -3.4529 20 6 5.0612 3.7865 -3.1590 21 6 5.7281 3.8750 -1.9527 22 6 5.6408 2.8377 -1.0353 23 8 6.2960 2.9224 0.1523 24 6 7.0810 4.0950 0.3780 25 6 5.8589 -0.5032 -0.3975 26 6 4.4363 -0.8027 -0.8769 27 1 -0.5400 -0.9316 0.0833 28 1 -0.5400 0.9315 -0.0834 29 1 1.8501 -0.9353 0.0004 30 1 1.3568 2.1327 0.0603 31 1 2.6441 1.3895 -0.9187 32 1 1.4114 1.5789 2.5426 33 1 3.0232 1.3137 3.2497 34 1 1.4562 3.7709 5.5013 35 1 3.6285 0.7559 -2.7721 36 1 3.7868 2.5977 -4.3968 37 1 5.1287 4.5937 -3.8732 38 1 6.3205 4.7490 -1.7254 39 1 6.4325 4.9710 0.3824 40 1 7.5880 4.0134 1.3394 41 1 7.8213 4.1949 -0.4158 42 1 6.6353 -0.4038 -1.1560 43 1 6.1764 -0.9489 0.5451 44 1 3.8187 -1.4452 -0.2495 45 1 4.2768 -0.9001 -1.9508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293709620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:57 Heat of formation + Delta-G solvation = -9.348342 kcal Electronic energy + Delta-G solvation = -27716.118150 eV Core-core repulsion = 24086.104534 eV Total energy + Delta-G solvation = -3630.013616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80287 -40.40464 -38.51067 -37.40529 -36.97689 -35.06528 -33.63760 -31.75991 -31.01221 -29.76960 -28.17021 -26.96605 -26.11881 -24.39349 -23.69429 -22.65141 -22.30334 -21.02927 -19.63556 -19.05279 -18.60604 -17.94481 -17.35235 -16.89615 -16.71216 -16.54581 -16.31944 -15.83137 -15.50911 -15.37415 -15.31250 -14.71491 -14.52479 -14.22583 -14.04640 -13.68004 -13.60537 -13.36811 -13.06478 -12.94653 -12.74329 -12.63400 -12.51356 -12.44761 -12.28471 -12.14750 -12.01030 -11.96714 -11.69835 -11.46965 -11.33507 -10.66724 -10.54870 -10.27321 -9.68905 -9.41279 -9.02640 -8.23982 -6.38370 0.34699 0.53471 1.29960 1.33479 1.33714 1.43842 1.82990 2.32811 2.46888 2.49880 2.67591 2.96078 3.04518 3.55425 3.68615 3.90638 3.98356 4.08247 4.14011 4.15871 4.24303 4.27285 4.29395 4.41148 4.49270 4.58404 4.62202 4.69105 4.71311 4.76755 4.85549 4.94034 5.02610 5.08782 5.10650 5.19802 5.22317 5.44519 5.49919 5.53057 5.60799 5.72490 5.77715 5.93738 5.99605 6.06753 6.53523 6.68545 6.82555 7.26855 7.54048 8.83222 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.006376 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.586500 B = 4390.236923 C = 5467.010395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.181 4.181 3 C 0.131 3.869 4 N -0.592 5.592 5 C 0.266 3.734 6 C -0.535 4.535 7 H 0.045 0.955 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.590 6.590 16 C -0.117 4.117 17 C -0.095 4.095 18 C -0.076 4.076 19 C -0.152 4.152 20 C -0.080 4.080 21 C -0.220 4.220 22 C 0.110 3.890 23 O -0.332 6.332 24 C 0.026 3.974 25 C -0.140 4.140 26 C -0.130 4.130 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.019 0.981 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -3.286 -21.351 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.200 4.200 3 C 0.009 3.991 4 N -0.321 5.321 5 C 0.145 3.855 6 C -0.573 4.573 7 H 0.063 0.937 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.199 1.199 14 C 0.335 3.665 15 O -0.471 6.471 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.093 4.093 19 C -0.170 4.170 20 C -0.098 4.098 21 C -0.239 4.239 22 C 0.064 3.936 23 O -0.246 6.246 24 C -0.069 4.069 25 C -0.178 4.178 26 C -0.166 4.166 27 H 0.137 0.863 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.412 -3.400 -20.475 21.219 hybrid contribution 0.285 1.359 1.267 1.880 sum 4.697 -2.041 -19.208 19.879 Atomic orbital electron populations 1.24031 0.95448 1.02859 0.98422 1.23342 0.96707 0.98156 1.01761 1.20828 0.93115 0.95983 0.89147 1.48022 1.09736 1.62791 1.11588 1.18651 0.93055 0.93417 0.80373 1.21586 1.40304 0.93625 1.01819 0.93715 1.25831 0.94624 1.03644 0.94891 1.70057 1.42256 1.37850 1.06562 0.85473 0.78880 0.79278 0.77569 1.18682 1.20271 1.19891 1.19955 0.81179 0.75931 0.89433 1.90586 1.58435 1.55670 1.42374 1.19700 1.08495 0.91411 0.92436 1.18294 1.02004 0.93314 0.96021 1.21168 0.96805 1.00447 0.90924 1.21403 1.01116 0.93486 1.00990 1.21334 0.94489 0.98707 0.95249 1.21466 1.06791 0.99180 0.96439 1.19390 0.93443 0.95238 0.85502 1.86269 1.61057 1.42995 1.34256 1.23156 0.94416 0.86032 1.03307 1.23000 0.93206 0.98554 1.02997 1.23356 0.97347 0.92423 1.03510 0.86261 0.88618 0.86444 0.91888 0.87649 0.96271 0.98823 0.92393 0.82392 0.82212 0.82906 0.84559 0.93244 0.88652 0.90105 0.86396 0.90068 0.88315 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 14.31 67.78 0.97 -3.41 16 2 C -0.18 -5.29 9.64 25.64 0.25 -5.04 16 3 C 0.13 4.72 5.59 85.64 0.48 5.20 16 4 N -0.59 -27.92 2.44 -830.51 -2.03 -29.94 16 5 C 0.27 15.49 5.22 85.64 0.45 15.94 16 6 C -0.53 -32.71 9.39 25.60 0.24 -32.47 16 7 H 0.04 2.77 7.81 -2.91 -0.02 2.74 16 8 C 0.01 0.53 5.46 84.66 0.46 1.00 16 9 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 10 Si 0.96 46.55 29.54 68.60 2.03 48.58 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 14 C 0.55 25.67 6.02 87.65 0.53 26.20 16 15 O -0.59 -34.01 16.27 -3.06 -0.05 -34.06 16 16 C -0.12 -3.97 0.77 -53.67 -0.04 -4.01 16 17 C -0.10 -2.93 4.30 -19.77 -0.08 -3.01 16 18 C -0.08 -1.65 7.59 22.25 0.17 -1.49 16 19 C -0.15 -2.78 10.04 22.28 0.22 -2.56 16 20 C -0.08 -1.62 10.04 22.25 0.22 -1.39 16 21 C -0.22 -5.85 9.04 22.36 0.20 -5.65 16 22 C 0.11 3.72 6.56 22.51 0.15 3.87 16 23 O -0.33 -13.24 9.22 -92.41 -0.85 -14.09 16 24 C 0.03 0.78 9.82 113.37 1.11 1.89 16 25 C -0.14 -4.09 9.77 30.62 0.30 -3.79 16 26 C -0.13 -3.08 8.76 30.62 0.27 -2.81 16 27 H 0.12 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.10 2.49 7.85 -2.91 -0.02 2.47 16 29 H 0.12 3.11 6.55 -2.91 -0.02 3.09 16 30 H 0.06 2.42 7.76 -2.39 -0.02 2.40 16 31 H 0.11 3.24 3.81 -2.38 -0.01 3.23 16 32 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 33 H -0.01 -0.42 7.36 -2.39 -0.02 -0.44 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.16 2.45 6.51 -2.91 -0.02 2.43 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.14 3.16 6.30 -2.91 -0.02 3.14 16 39 H 0.05 1.48 7.76 -2.39 -0.02 1.46 16 40 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.08 1.84 7.56 -2.39 -0.02 1.82 16 42 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.08 2.71 8.03 -2.39 -0.02 2.69 16 44 H 0.10 2.38 6.95 -2.39 -0.02 2.37 16 45 H 0.14 2.21 6.73 -2.39 -0.02 2.19 16 Total: -1.00 -83.42 372.20 6.26 -77.16 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.99 Total: 21.74 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.89 Total: -11.53 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.74 Total: -87.79 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.90 Total: -48.15 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -83.42 6.26 -77.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293709620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.807 kcal (2) G-P(sol) polarization free energy of solvation -83.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds