Wall clock time and date at job start Tue Mar 31 2020 10:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47411 * 2 1 4 4 C 1.36934 * 119.99715 * 270.88888 * 3 2 1 5 5 H 1.08002 * 120.00351 * 326.00746 * 4 3 2 6 6 C 1.38817 * 119.99978 * 146.01811 * 4 3 2 7 7 N 1.31613 * 119.99808 * 336.65803 * 6 4 3 8 8 Si 1.86798 * 120.00072 * 156.66144 * 6 4 3 9 9 H 1.48492 * 109.47080 * 59.99608 * 8 6 4 10 10 H 1.48504 * 109.47044 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46833 * 299.99415 * 8 6 4 12 12 C 1.46496 * 119.99954 * 90.88671 * 3 2 1 13 13 C 1.52998 * 109.47336 * 89.99998 * 12 3 2 14 14 H 1.09003 * 109.47040 * 59.99766 * 13 12 3 15 15 O 1.42901 * 109.47017 * 299.99981 * 13 12 3 16 16 C 1.52994 * 109.47453 * 179.97438 * 13 12 3 17 17 O 1.42900 * 109.47572 * 185.00044 * 16 13 12 18 18 C 1.35806 * 117.00345 * 180.02562 * 17 16 13 19 19 C 1.36661 * 120.22648 * 359.97438 * 18 17 16 20 20 C 1.39193 * 120.92243 * 180.02562 * 19 18 17 21 21 C 1.36177 * 121.05983 * 359.97438 * 20 19 18 22 22 C 1.40525 * 119.76824 * 359.97438 * 21 20 19 23 23 C 1.40551 * 121.27504 * 179.72117 * 22 21 20 24 24 C 1.36101 * 119.65082 * 179.80804 * 23 22 21 25 25 C 1.39358 * 120.97917 * 0.50001 * 24 23 22 26 26 C 1.36134 * 120.97590 * 359.72221 * 25 24 23 27 27 C 1.40420 * 119.66653 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46882 * 300.00474 * 1 2 3 29 29 H 1.09000 * 109.47186 * 59.99663 * 1 2 3 30 30 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47190 * 239.99978 * 2 1 3 32 32 H 1.08998 * 109.46822 * 119.99951 * 2 1 3 33 33 H 0.96995 * 120.00397 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47247 * 329.99892 * 12 3 2 35 35 H 1.09001 * 109.47058 * 210.00343 * 12 3 2 36 36 H 0.96697 * 114.00159 * 299.99577 * 15 13 12 37 37 H 1.09006 * 109.46852 * 65.00201 * 16 13 12 38 38 H 1.08999 * 109.47351 * 305.00243 * 16 13 12 39 39 H 1.08001 * 119.54157 * 0.02562 * 19 18 17 40 40 H 1.07999 * 119.47527 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.11628 * 179.97438 * 21 20 19 42 42 H 1.07999 * 120.17268 * 0.02562 * 23 22 21 43 43 H 1.08001 * 119.50674 * 180.22975 * 24 23 22 44 44 H 1.07997 * 119.51308 * 179.74052 * 25 24 23 45 45 H 1.08005 * 120.16996 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2293 2.0328 -1.1858 5 1 2.5758 1.4843 -2.0492 6 6 1.9979 3.3984 -1.2780 7 7 1.1736 3.9845 -0.4359 8 14 2.8563 4.4041 -2.5975 9 1 2.4815 3.8854 -3.9375 10 1 2.4423 5.8258 -2.4840 11 1 4.3270 4.3008 -2.4202 12 6 2.2811 2.0652 1.2686 13 6 3.7323 1.8226 1.6879 14 1 4.4020 2.2106 0.9204 15 8 3.9536 0.4199 1.8483 16 6 4.0069 2.5374 3.0124 17 8 5.3906 2.4087 3.3454 18 6 5.8035 2.9909 4.5007 19 6 4.9125 3.6637 5.2888 20 6 5.3201 4.2663 6.4755 21 6 6.6169 4.2030 6.8864 22 6 7.5638 3.5196 6.1048 23 6 8.9115 3.4395 6.4957 24 6 9.8000 2.7657 5.7154 25 6 9.3961 2.1609 4.5266 26 6 8.1001 2.2220 4.1145 27 6 7.1537 2.9041 4.8960 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0115 4.9387 -0.5005 34 1 1.6114 1.6772 2.0361 35 1 2.1123 3.1351 1.1462 36 1 3.3905 0.0069 2.5172 37 1 3.4005 2.0893 3.7996 38 1 3.7534 3.5930 2.9149 39 1 3.8777 3.7288 4.9867 40 1 4.5963 4.7925 7.0802 41 1 6.9165 4.6764 7.8097 42 1 9.2396 3.9072 7.4122 43 1 10.8343 2.7025 6.0198 44 1 10.1220 1.6358 3.9235 45 1 7.8013 1.7482 3.1910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299545449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:38 Heat of formation + Delta-G solvation = -27.650964 kcal Electronic energy + Delta-G solvation = -25961.754298 eV Core-core repulsion = 22330.947021 eV Total energy + Delta-G solvation = -3630.807277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.71634 -38.75144 -37.12819 -35.96677 -34.93309 -32.20004 -31.83222 -30.61431 -30.22853 -28.82191 -28.30266 -25.72012 -23.78928 -23.32252 -22.91513 -21.65031 -21.17029 -20.13332 -18.07111 -17.51498 -17.02347 -16.59863 -16.09747 -15.64064 -15.52362 -14.87279 -14.60209 -14.25836 -14.12882 -13.95951 -13.75168 -13.64692 -13.24610 -13.08710 -13.02232 -12.37193 -12.30303 -12.05539 -11.88564 -11.45954 -11.22848 -11.10931 -11.07775 -10.90505 -10.85496 -10.71064 -10.46171 -10.25379 -10.15819 -10.07932 -9.78876 -9.46523 -9.36330 -8.71616 -8.55781 -7.55838 -6.65105 -5.84950 -3.37419 0.59325 0.93518 2.06091 2.98057 3.21641 3.35876 3.41038 3.44684 4.08527 4.45052 4.61262 4.76820 4.81872 4.93490 4.98142 5.10607 5.12554 5.17127 5.29978 5.34465 5.38779 5.40511 5.52764 5.61839 5.81325 5.92023 5.99364 6.02829 6.12591 6.16917 6.19035 6.20109 6.38346 6.45313 6.51127 6.51781 6.54042 6.68867 6.69599 6.91003 6.93487 6.98569 7.23583 7.41932 7.51406 7.77859 8.25943 8.43584 9.11881 9.76001 10.32444 11.14942 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.003192 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.981126 B = 8768.709406 C = 9087.260011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 N -0.573 5.573 4 C -0.254 4.254 5 H 0.063 0.937 6 C 0.007 3.993 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.121 3.879 13 C 0.089 3.911 14 H 0.104 0.896 15 O -0.551 6.551 16 C 0.029 3.971 17 O -0.298 6.298 18 C 0.158 3.842 19 C -0.234 4.234 20 C -0.067 4.067 21 C -0.161 4.161 22 C -0.017 4.017 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.074 4.074 27 C -0.076 4.076 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.255 0.745 34 H 0.028 0.972 35 H 0.109 0.891 36 H 0.358 0.642 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.450 -1.363 15.104 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 N -0.292 5.292 4 C -0.384 4.384 5 H 0.081 0.919 6 C -0.193 4.193 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.208 1.208 12 C -0.007 4.007 13 C 0.027 3.973 14 H 0.122 0.878 15 O -0.354 6.354 16 C -0.047 4.047 17 O -0.210 6.210 18 C 0.111 3.889 19 C -0.253 4.253 20 C -0.085 4.085 21 C -0.180 4.180 22 C -0.017 4.017 23 C -0.141 4.141 24 C -0.122 4.122 25 C -0.157 4.157 26 C -0.092 4.092 27 C -0.076 4.076 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.126 0.874 36 H 0.203 0.797 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.915 -1.210 14.442 18.143 hybrid contribution -0.325 0.799 -0.075 0.865 sum 10.590 -0.411 14.368 17.853 Atomic orbital electron populations 1.22309 0.99954 0.98352 1.01776 1.20871 0.91399 0.87045 0.98643 1.43604 1.73895 1.10011 1.01729 1.19090 1.38005 0.91194 0.90106 0.91939 1.25060 0.97422 0.98524 0.98268 1.69952 1.33424 1.10523 1.39408 0.86477 0.80057 0.79153 0.81865 1.20665 1.21601 1.20847 1.21463 0.88900 1.03023 0.87290 1.23085 1.02009 0.80067 0.92162 0.87808 1.86629 1.64689 1.21923 1.62181 1.23926 0.78983 1.02245 0.99559 1.86158 1.28596 1.70460 1.35810 1.18854 0.92371 0.91487 0.86146 1.20914 1.00320 1.05895 0.98180 1.20571 0.95945 0.96890 0.95087 1.20803 0.93188 1.03228 1.00742 1.17892 0.94065 0.96574 0.93187 1.20925 0.92021 1.00866 1.00332 1.20876 0.99547 0.97030 0.94713 1.20820 0.96224 1.01429 0.97221 1.21092 0.92636 0.96374 0.99091 1.17511 0.91289 1.02574 0.96225 0.93994 0.92743 0.95048 0.94092 0.94332 0.93479 0.95317 0.87386 0.79725 0.92157 0.90980 0.85259 0.85966 0.85786 0.85602 0.86127 0.85958 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 37.16 0.38 -2.84 16 2 C 0.15 3.04 6.12 -4.04 -0.02 3.02 16 3 N -0.57 -13.69 2.37 -173.24 -0.41 -14.10 16 4 C -0.25 -6.78 9.48 -15.06 -0.14 -6.92 16 5 H 0.06 1.69 7.93 -52.49 -0.42 1.27 16 6 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 7 N -0.89 -24.46 11.34 55.49 0.63 -23.83 16 8 Si 0.90 21.23 29.61 -169.99 -5.03 16.19 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.12 2.61 4.99 -4.04 -0.02 2.59 16 13 C 0.09 1.70 3.52 -26.74 -0.09 1.60 16 14 H 0.10 2.29 8.14 -51.93 -0.42 1.87 16 15 O -0.55 -10.19 12.04 -40.06 -0.48 -10.67 16 16 C 0.03 0.46 4.37 37.15 0.16 0.63 16 17 O -0.30 -5.04 9.33 -23.96 -0.22 -5.26 16 18 C 0.16 2.45 6.67 -39.12 -0.26 2.19 16 19 C -0.23 -3.21 8.98 -39.80 -0.36 -3.56 16 20 C -0.07 -0.79 9.94 -39.97 -0.40 -1.18 16 21 C -0.16 -1.85 9.77 -39.46 -0.39 -2.23 16 22 C -0.02 -0.22 5.74 -106.84 -0.61 -0.83 16 23 C -0.12 -1.32 9.77 -39.48 -0.39 -1.70 16 24 C -0.10 -1.05 9.95 -39.93 -0.40 -1.45 16 25 C -0.14 -1.58 9.95 -39.92 -0.40 -1.97 16 26 C -0.07 -1.02 9.56 -39.52 -0.38 -1.40 16 27 C -0.08 -1.11 5.75 -106.72 -0.61 -1.73 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 34 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 35 H 0.11 2.64 5.33 -51.93 -0.28 2.37 16 36 H 0.36 5.30 8.79 45.56 0.40 5.70 16 37 H 0.06 0.85 7.65 -51.93 -0.40 0.45 16 38 H 0.07 1.15 7.66 -51.93 -0.40 0.75 16 39 H 0.13 1.65 6.21 -52.49 -0.33 1.32 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 1.89 7.62 -52.48 -0.40 1.49 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -29.92 371.12 -9.89 -39.80 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.95 Total: 7.98 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -4.01 Total: -15.70 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.22 Total: -37.93 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.71 Total: -15.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.92 -9.89 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299545449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.153 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds