Wall clock time and date at job start Tue Mar 31 2020 10:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47411 * 2 1 4 4 C 1.36934 * 119.99715 * 270.88888 * 3 2 1 5 5 H 1.08002 * 120.00351 * 326.00746 * 4 3 2 6 6 C 1.38817 * 119.99978 * 146.01811 * 4 3 2 7 7 N 1.31613 * 119.99808 * 336.65803 * 6 4 3 8 8 Si 1.86798 * 120.00072 * 156.66144 * 6 4 3 9 9 H 1.48492 * 109.47080 * 59.99608 * 8 6 4 10 10 H 1.48504 * 109.47044 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46833 * 299.99415 * 8 6 4 12 12 C 1.46496 * 119.99954 * 90.88671 * 3 2 1 13 13 C 1.52998 * 109.47336 * 89.99998 * 12 3 2 14 14 H 1.09003 * 109.47040 * 59.99766 * 13 12 3 15 15 O 1.42901 * 109.47017 * 299.99981 * 13 12 3 16 16 C 1.52994 * 109.47453 * 179.97438 * 13 12 3 17 17 O 1.42900 * 109.47572 * 185.00044 * 16 13 12 18 18 C 1.35806 * 117.00345 * 180.02562 * 17 16 13 19 19 C 1.36661 * 120.22648 * 359.97438 * 18 17 16 20 20 C 1.39193 * 120.92243 * 180.02562 * 19 18 17 21 21 C 1.36177 * 121.05983 * 359.97438 * 20 19 18 22 22 C 1.40525 * 119.76824 * 359.97438 * 21 20 19 23 23 C 1.40551 * 121.27504 * 179.72117 * 22 21 20 24 24 C 1.36101 * 119.65082 * 179.80804 * 23 22 21 25 25 C 1.39358 * 120.97917 * 0.50001 * 24 23 22 26 26 C 1.36134 * 120.97590 * 359.72221 * 25 24 23 27 27 C 1.40420 * 119.66653 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46882 * 300.00474 * 1 2 3 29 29 H 1.09000 * 109.47186 * 59.99663 * 1 2 3 30 30 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47190 * 239.99978 * 2 1 3 32 32 H 1.08998 * 109.46822 * 119.99951 * 2 1 3 33 33 H 0.96995 * 120.00397 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47247 * 329.99892 * 12 3 2 35 35 H 1.09001 * 109.47058 * 210.00343 * 12 3 2 36 36 H 0.96697 * 114.00159 * 299.99577 * 15 13 12 37 37 H 1.09006 * 109.46852 * 65.00201 * 16 13 12 38 38 H 1.08999 * 109.47351 * 305.00243 * 16 13 12 39 39 H 1.08001 * 119.54157 * 0.02562 * 19 18 17 40 40 H 1.07999 * 119.47527 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.11628 * 179.97438 * 21 20 19 42 42 H 1.07999 * 120.17268 * 0.02562 * 23 22 21 43 43 H 1.08001 * 119.50674 * 180.22975 * 24 23 22 44 44 H 1.07997 * 119.51308 * 179.74052 * 25 24 23 45 45 H 1.08005 * 120.16996 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2293 2.0328 -1.1858 5 1 2.5758 1.4843 -2.0492 6 6 1.9979 3.3984 -1.2780 7 7 1.1736 3.9845 -0.4359 8 14 2.8563 4.4041 -2.5975 9 1 2.4815 3.8854 -3.9375 10 1 2.4423 5.8258 -2.4840 11 1 4.3270 4.3008 -2.4202 12 6 2.2811 2.0652 1.2686 13 6 3.7323 1.8226 1.6879 14 1 4.4020 2.2106 0.9204 15 8 3.9536 0.4199 1.8483 16 6 4.0069 2.5374 3.0124 17 8 5.3906 2.4087 3.3454 18 6 5.8035 2.9909 4.5007 19 6 4.9125 3.6637 5.2888 20 6 5.3201 4.2663 6.4755 21 6 6.6169 4.2030 6.8864 22 6 7.5638 3.5196 6.1048 23 6 8.9115 3.4395 6.4957 24 6 9.8000 2.7657 5.7154 25 6 9.3961 2.1609 4.5266 26 6 8.1001 2.2220 4.1145 27 6 7.1537 2.9041 4.8960 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0115 4.9387 -0.5005 34 1 1.6114 1.6772 2.0361 35 1 2.1123 3.1351 1.1462 36 1 3.3905 0.0069 2.5172 37 1 3.4005 2.0893 3.7996 38 1 3.7534 3.5930 2.9149 39 1 3.8777 3.7288 4.9867 40 1 4.5963 4.7925 7.0802 41 1 6.9165 4.6764 7.8097 42 1 9.2396 3.9072 7.4122 43 1 10.8343 2.7025 6.0198 44 1 10.1220 1.6358 3.9235 45 1 7.8013 1.7482 3.1910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299545449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:37 Heat of formation + Delta-G solvation = -44.115842 kcal Electronic energy + Delta-G solvation = -25962.468269 eV Core-core repulsion = 22330.947021 eV Total energy + Delta-G solvation = -3631.521248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.71680 -39.93794 -38.63104 -36.98711 -36.56585 -33.77244 -33.18645 -31.99575 -31.30289 -30.20863 -29.54263 -27.38711 -25.45425 -24.25917 -24.03142 -22.85770 -22.44807 -21.88329 -19.28874 -18.69369 -18.41469 -17.72195 -17.48170 -16.95896 -16.71444 -16.54885 -16.04878 -15.70102 -15.42689 -15.22702 -15.08922 -14.87957 -14.57935 -14.22547 -14.05230 -14.01024 -13.63674 -13.29195 -13.13747 -12.92518 -12.89300 -12.55745 -12.44453 -12.31657 -12.14786 -11.97854 -11.93926 -11.88985 -11.85635 -11.60005 -11.52830 -10.95065 -10.56351 -10.45167 -9.63697 -8.59572 -8.52734 -7.85468 -5.41680 -0.34001 0.00915 1.10884 1.42767 1.46433 1.52413 2.04030 2.07988 2.49649 3.14700 3.19660 3.50951 3.62596 3.73467 3.87503 3.93489 3.97776 4.06022 4.13581 4.25652 4.33769 4.41383 4.45935 4.49350 4.51037 4.52961 4.58238 4.67557 4.86821 4.89155 5.00314 5.09299 5.12448 5.15275 5.28270 5.31057 5.31310 5.47369 5.53160 5.58932 5.60544 5.62044 5.73793 5.77829 6.04799 6.39258 6.43079 6.91942 7.14648 7.85164 8.34950 9.09554 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.003192 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.981126 B = 8768.709406 C = 9087.260011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.266 4.266 5 H 0.051 0.949 6 C -0.032 4.032 7 N -0.911 5.911 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.126 3.874 13 C 0.106 3.894 14 H 0.066 0.934 15 O -0.560 6.560 16 C 0.042 3.958 17 O -0.319 6.319 18 C 0.121 3.879 19 C -0.234 4.234 20 C -0.081 4.081 21 C -0.149 4.149 22 C -0.039 4.039 23 C -0.117 4.117 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.110 4.110 27 C -0.097 4.097 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.253 0.747 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.376 0.624 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.836 -1.265 17.748 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 N -0.310 5.310 4 C -0.397 4.397 5 H 0.068 0.932 6 C -0.230 4.230 7 N -0.555 5.555 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.212 1.212 12 C -0.001 4.001 13 C 0.044 3.956 14 H 0.084 0.916 15 O -0.366 6.366 16 C -0.034 4.034 17 O -0.233 6.233 18 C 0.075 3.925 19 C -0.253 4.253 20 C -0.098 4.098 21 C -0.167 4.167 22 C -0.039 4.039 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.128 4.128 27 C -0.097 4.097 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.224 0.776 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.298 -1.133 17.105 21.097 hybrid contribution -0.650 0.703 -0.794 1.244 sum 11.648 -0.429 16.311 20.047 Atomic orbital electron populations 1.22157 0.98863 1.00107 1.00021 1.21002 0.92208 0.85639 0.99478 1.43825 1.74559 1.11024 1.01603 1.19225 1.37744 0.91759 0.90958 0.93150 1.25591 0.98053 0.99192 1.00155 1.70051 1.34404 1.10367 1.40696 0.85661 0.78786 0.77898 0.80126 1.20196 1.21464 1.21186 1.21354 0.90593 1.01229 0.86962 1.22527 0.99422 0.80760 0.92868 0.91619 1.86579 1.65367 1.21500 1.63186 1.23618 0.79680 1.01645 0.98479 1.86083 1.28398 1.71531 1.37268 1.19115 0.93445 0.93587 0.86337 1.21139 1.00232 1.05289 0.98685 1.20904 0.97052 0.97164 0.94723 1.21244 0.92645 1.01554 1.01229 1.18278 0.95727 0.97024 0.92848 1.21363 0.90893 0.99975 1.01273 1.21281 1.01295 0.96090 0.93793 1.21154 0.95442 1.00428 0.97813 1.21071 0.94057 0.98409 0.99261 1.17807 0.91160 1.03350 0.97400 0.94435 0.95674 0.91479 0.94795 0.91876 0.93784 0.93554 0.90165 0.77600 0.89835 0.91395 0.84945 0.83141 0.82368 0.82192 0.82618 0.84025 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 10.24 71.98 0.74 -5.10 16 2 C 0.14 5.85 6.12 86.38 0.53 6.37 16 3 N -0.59 -28.69 2.37 -702.01 -1.67 -30.36 16 4 C -0.27 -14.61 9.48 84.04 0.80 -13.81 16 5 H 0.05 2.82 7.93 -2.91 -0.02 2.80 16 6 C -0.03 -1.78 4.94 84.86 0.42 -1.36 16 7 N -0.91 -51.31 11.34 21.65 0.25 -51.06 16 8 Si 0.95 44.70 29.61 68.60 2.03 46.73 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.13 5.53 4.99 86.38 0.43 5.96 16 13 C 0.11 4.19 3.52 30.59 0.11 4.30 16 14 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 15 O -0.56 -20.81 12.04 -144.37 -1.74 -22.55 16 16 C 0.04 1.38 4.37 71.98 0.31 1.69 16 17 O -0.32 -11.34 9.33 -86.76 -0.81 -12.15 16 18 C 0.12 3.85 6.67 22.57 0.15 4.00 16 19 C -0.23 -6.35 8.98 22.13 0.20 -6.15 16 20 C -0.08 -1.73 9.94 22.02 0.22 -1.51 16 21 C -0.15 -2.99 9.77 22.35 0.22 -2.77 16 22 C -0.04 -0.93 5.74 -21.30 -0.12 -1.05 16 23 C -0.12 -2.11 9.77 22.34 0.22 -1.89 16 24 C -0.11 -1.84 9.95 22.04 0.22 -1.62 16 25 C -0.13 -2.82 9.95 22.05 0.22 -2.60 16 26 C -0.11 -3.13 9.56 22.31 0.21 -2.91 16 27 C -0.10 -2.88 5.75 -21.23 -0.12 -3.00 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.42 8.05 -2.39 -0.02 1.41 16 32 H 0.06 2.26 6.90 -2.39 -0.02 2.25 16 33 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 34 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 35 H 0.08 4.06 5.33 -2.39 -0.01 4.05 16 36 H 0.38 10.74 8.79 -74.06 -0.65 10.08 16 37 H 0.08 2.33 7.65 -2.38 -0.02 2.31 16 38 H 0.07 2.27 7.66 -2.39 -0.02 2.25 16 39 H 0.13 3.34 6.21 -2.91 -0.02 3.33 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.11 3.55 7.62 -2.91 -0.02 3.52 16 Total: -1.00 -67.24 371.12 3.15 -64.09 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.34 Total: 26.75 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.75 Total: -21.45 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.42 Total: -81.42 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -2.55 Total: -34.70 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.24 3.15 -64.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299545449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.975 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds