Wall clock time and date at job start Tue Mar 31 2020 10:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21257 * 119.99624 * 2 1 4 4 C 1.47166 * 119.99887 * 179.72328 * 2 1 3 5 5 C 1.39869 * 120.17313 * 359.72083 * 4 2 1 6 6 C 1.37875 * 119.84031 * 179.78085 * 5 4 2 7 7 C 1.38634 * 119.99176 * 0.46646 * 6 5 4 8 8 C 1.37465 * 120.49777 * 359.79906 * 7 6 5 9 9 C 1.38089 * 120.39145 * 359.96189 * 8 7 6 10 10 C 1.51264 * 120.28131 * 179.91216 * 8 7 6 11 11 C 1.53255 * 108.67642 * 70.84556 * 10 8 7 12 12 N 1.45958 * 109.74213 * 279.16343 * 11 10 8 13 13 C 1.34774 * 118.42586 * 245.02089 * 12 11 10 14 14 O 1.21279 * 120.00062 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00050 * 179.97438 * 13 12 11 16 16 C 1.52995 * 109.47375 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47406 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99999 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00077 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00096 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46659 * 89.99951 * 21 19 17 23 23 H 1.48498 * 109.47345 * 210.00125 * 21 19 17 24 24 H 1.48500 * 109.46864 * 330.00463 * 21 19 17 25 25 C 1.45959 * 123.15259 * 64.99397 * 12 11 10 26 26 C 1.51272 * 119.30260 * 179.79713 * 7 6 5 27 27 H 1.09002 * 109.47260 * 240.27775 * 1 2 3 28 28 H 1.09008 * 109.47154 * 0.27766 * 1 2 3 29 29 H 1.09005 * 109.47238 * 120.27736 * 1 2 3 30 30 H 1.07997 * 120.08037 * 0.02562 * 5 4 2 31 31 H 1.08000 * 120.00408 * 180.21751 * 6 5 4 32 32 H 1.08002 * 120.19197 * 180.02562 * 9 8 7 33 33 H 1.08999 * 109.60474 * 190.60587 * 10 8 7 34 34 H 1.09009 * 109.60285 * 311.08938 * 10 8 7 35 35 H 1.08996 * 109.42972 * 39.25115 * 11 10 8 36 36 H 1.09001 * 109.42346 * 159.08106 * 11 10 8 37 37 H 1.09006 * 109.47440 * 300.00436 * 15 13 12 38 38 H 1.09005 * 109.46905 * 60.00183 * 15 13 12 39 39 H 1.09001 * 109.47075 * 300.00286 * 16 15 13 40 40 H 1.08997 * 109.47012 * 60.00022 * 16 15 13 41 41 H 0.97008 * 120.00009 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.42425 * 55.05185 * 25 12 11 43 43 H 1.09004 * 109.42688 * 174.93323 * 25 12 11 44 44 H 1.08997 * 109.58726 * 349.51634 * 26 7 6 45 45 H 1.09000 * 109.74128 * 229.11225 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2428 -1.2745 0.0062 5 6 1.5471 -2.4878 0.0179 6 6 2.2434 -3.6779 0.0190 7 6 3.6297 -3.6697 0.0183 8 6 4.3203 -2.4811 0.0123 9 6 3.6414 -1.2787 0.0061 10 6 5.8329 -2.4779 0.0136 11 6 6.3259 -2.9608 -1.3548 12 7 6.2796 -4.4186 -1.4092 13 6 7.4407 -5.0935 -1.5231 14 8 8.4906 -4.4890 -1.5784 15 6 7.4343 -6.5994 -1.5818 16 6 8.8704 -7.1109 -1.7107 17 6 8.8640 -8.6167 -1.7700 18 1 7.9291 -9.1551 -1.7203 19 6 10.0517 -9.3071 -1.8866 20 7 11.1902 -8.6515 -1.9467 21 14 10.0439 -11.1737 -1.9594 22 1 9.9366 -11.6134 -3.3738 23 1 11.3034 -11.6973 -1.3724 24 1 8.8852 -11.6941 -1.1901 25 6 5.0364 -5.1808 -1.3455 26 6 4.3778 -4.9844 0.0243 27 1 -0.3634 -0.5095 0.8925 28 1 -0.3634 1.0277 -0.0050 29 1 -0.3634 -0.5182 -0.8875 30 1 0.4672 -2.4926 0.0221 31 1 1.7088 -4.6163 0.0246 32 1 4.1872 -0.3468 0.0010 33 1 6.1963 -1.4668 0.1973 34 1 6.1995 -3.1477 0.7916 35 1 5.6877 -2.5484 -2.1363 36 1 7.3510 -2.6245 -1.5102 37 1 6.9871 -6.9967 -0.6705 38 1 6.8536 -6.9269 -2.4442 39 1 9.3172 -6.7136 -2.6221 40 1 9.4515 -6.7833 -0.8486 41 1 12.0260 -9.1373 -2.0284 42 1 4.3589 -4.8350 -2.1263 43 1 5.2518 -6.2388 -1.4949 44 1 3.6810 -5.8005 0.2154 45 1 5.1440 -4.9686 0.7994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331458496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:03 Heat of formation + Delta-G solvation = -61.469770 kcal Electronic energy + Delta-G solvation = -25567.911006 eV Core-core repulsion = 21935.637235 eV Total energy + Delta-G solvation = -3632.273771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82096 -39.75297 -38.69469 -36.10340 -33.85540 -33.30297 -33.04134 -31.14522 -30.54450 -29.97594 -27.59775 -25.85072 -24.87111 -23.39000 -22.48204 -21.90912 -21.07312 -19.35277 -18.57230 -17.33072 -17.04167 -16.30337 -15.90616 -15.67052 -15.61192 -15.36667 -15.22496 -14.66470 -14.49261 -14.41332 -13.89886 -13.71876 -13.34650 -13.25774 -12.94505 -12.69863 -12.59298 -12.30475 -12.22198 -12.15215 -11.92504 -11.68968 -11.53450 -11.32275 -11.05842 -10.98434 -10.94182 -10.58493 -10.08410 -9.98370 -9.61526 -9.20092 -9.16961 -9.14223 -8.99122 -8.41163 -8.32231 -5.97366 -4.01975 0.33192 1.04126 2.05837 3.15812 3.24651 3.32000 3.38406 3.40598 3.42380 3.67491 4.29954 4.39385 4.45470 4.56697 4.62865 4.83104 4.87007 4.94612 4.95436 4.99334 5.06520 5.13321 5.20011 5.25676 5.33071 5.37562 5.41206 5.55440 5.59827 5.60640 5.67661 5.86682 5.94130 5.95083 6.01587 6.11346 6.16449 6.17712 6.32309 6.57363 6.78391 6.88389 7.16217 7.66130 7.72835 7.84431 8.05618 8.36552 8.70073 9.06434 9.61632 11.13500 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.002401 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.087252 B =11660.844325 C =12323.116724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.461 6.461 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.129 4.129 7 C -0.043 4.043 8 C -0.090 4.090 9 C -0.055 4.055 10 C -0.098 4.098 11 C 0.116 3.884 12 N -0.623 5.623 13 C 0.506 3.494 14 O -0.531 6.531 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.115 3.885 26 C -0.107 4.107 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.513 12.914 4.734 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.337 6.337 4 C -0.181 4.181 5 C -0.095 4.095 6 C -0.147 4.147 7 C -0.043 4.043 8 C -0.090 4.090 9 C -0.073 4.073 10 C -0.136 4.136 11 C -0.007 4.007 12 N -0.359 5.359 13 C 0.297 3.703 14 O -0.406 6.406 15 C -0.170 4.170 16 C -0.001 4.001 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.009 4.009 26 C -0.145 4.145 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.432 13.783 4.677 27.584 hybrid contribution -0.235 -1.091 0.013 1.116 sum -23.667 12.692 4.689 27.262 Atomic orbital electron populations 1.22248 0.93789 1.05114 1.04530 1.22532 0.91668 0.87645 0.70814 1.90546 1.72230 1.34372 1.36514 1.20463 0.94505 0.94711 1.08442 1.21373 0.99880 0.91431 0.96796 1.21129 0.93364 0.98282 1.01875 1.20032 0.93647 0.95075 0.95530 1.19744 0.96336 0.92267 1.00607 1.21413 0.93004 0.98063 0.94813 1.21248 0.90242 1.02923 0.99167 1.21291 1.03423 0.80650 0.95357 1.47896 1.06898 1.05947 1.75124 1.21726 0.82624 0.91765 0.74218 1.90654 1.30935 1.70582 1.48442 1.21904 1.04567 0.88278 1.02233 1.18908 0.87768 0.94899 0.98524 1.21207 0.92679 0.91635 1.51013 0.92623 1.25030 0.95658 0.98387 0.95338 1.70000 0.97572 1.35386 1.49802 0.86596 0.77433 0.85781 0.78158 1.20675 1.21233 1.19896 1.21522 0.85690 0.97956 0.95730 1.21376 0.99937 0.93910 0.99251 0.88826 0.89758 0.88815 0.85186 0.85119 0.84911 0.89900 0.89806 0.91837 0.88115 0.90199 0.90218 0.95853 0.95838 0.92943 0.91400 0.87959 0.89417 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.97 8.93 36.01 0.32 -0.65 16 2 C 0.39 3.53 7.23 -30.69 -0.22 3.31 16 3 O -0.46 -5.80 17.08 5.58 0.10 -5.70 16 4 C -0.18 -1.62 5.87 -105.06 -0.62 -2.24 16 5 C -0.08 -0.53 9.47 -39.10 -0.37 -0.90 16 6 C -0.13 -0.96 9.65 -39.57 -0.38 -1.34 16 7 C -0.04 -0.39 5.06 -104.48 -0.53 -0.92 16 8 C -0.09 -0.91 5.04 -104.68 -0.53 -1.44 16 9 C -0.05 -0.56 9.21 -39.03 -0.36 -0.92 16 10 C -0.10 -1.06 5.48 -27.47 -0.15 -1.21 16 11 C 0.12 1.48 6.06 -4.20 -0.03 1.45 16 12 N -0.62 -8.78 2.75 -174.23 -0.48 -9.26 16 13 C 0.51 9.55 7.62 -10.99 -0.08 9.47 16 14 O -0.53 -12.29 15.15 5.56 0.08 -12.20 16 15 C -0.13 -2.55 3.90 -27.89 -0.11 -2.66 16 16 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 17 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.11 1.22 5.95 -4.20 -0.03 1.19 16 26 C -0.11 -0.96 5.47 -27.47 -0.15 -1.11 16 27 H 0.09 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.08 0.42 8.12 -51.92 -0.42 0.00 16 29 H 0.09 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.13 0.52 7.05 -52.49 -0.37 0.15 16 31 H 0.13 0.68 7.95 -52.49 -0.42 0.27 16 32 H 0.13 1.37 7.55 -52.49 -0.40 0.97 16 33 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.08 0.98 7.21 -51.92 -0.37 0.61 16 35 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 36 H 0.10 1.48 6.75 -51.93 -0.35 1.13 16 37 H 0.08 1.41 7.81 -51.93 -0.41 1.01 16 38 H 0.08 1.42 7.61 -51.93 -0.40 1.03 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 43 H 0.10 1.07 5.52 -51.93 -0.29 0.78 16 44 H 0.09 0.60 7.89 -51.93 -0.41 0.19 16 45 H 0.09 0.89 7.22 -51.93 -0.37 0.52 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -35.37 365.81 -9.49 -44.86 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.66 Total: -2.54 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.76 Total: -10.57 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.26 Total: -35.75 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.18 Total: -17.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.37 -9.49 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331458496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.612 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds